Lmod Warning:
-------------------------------------------------------------------------------
The following dependent module(s) are not currently loaded: curl/8.4.0
(required by: htslib/1.16)
-------------------------------------------------------------------------------




The following have been reloaded with a version change:
  1) curl/8.4.0 => curl/8.17.0     2) openssl/3.0.7 => openssl/3.6.0

peaks:   0%|          | 0/2597 [00:00<?, ?it/s]peaks:   7%|▋         | 185/2597 [00:00<00:01, 1846.89it/s]peaks:  14%|█▍        | 376/2597 [00:00<00:01, 1878.90it/s]peaks:  22%|██▏       | 566/2597 [00:00<00:01, 1888.24it/s]peaks:  29%|██▉       | 757/2597 [00:00<00:00, 1894.99it/s]peaks:  37%|███▋      | 948/2597 [00:00<00:00, 1899.82it/s]peaks:  44%|████▍     | 1139/2597 [00:00<00:00, 1903.20it/s]peaks:  51%|█████     | 1330/2597 [00:00<00:00, 1897.50it/s]peaks:  59%|█████▊    | 1521/2597 [00:00<00:00, 1899.10it/s]peaks:  66%|██████▌   | 1711/2597 [00:00<00:00, 1883.74it/s]peaks:  73%|███████▎  | 1901/2597 [00:01<00:00, 1888.68it/s]peaks:  81%|████████  | 2091/2597 [00:01<00:00, 1891.46it/s]peaks:  88%|████████▊ | 2283/2597 [00:01<00:00, 1897.34it/s]peaks:  95%|█████████▌| 2475/2597 [00:01<00:00, 1901.53it/s]peaks: 100%|██████████| 2597/2597 [00:01<00:00, 1893.19it/s]
0it [00:00, ?it/s]6it [00:00, 58.87it/s]15it [00:00, 74.78it/s]25it [00:00, 82.05it/s]35it [00:00, 86.92it/s]47it [00:00, 93.90it/s]58it [00:00, 98.03it/s]70it [00:00, 103.04it/s]81it [00:00, 99.33it/s] 91it [00:01, 88.09it/s]101it [00:01, 82.15it/s]111it [00:01, 82.53it/s]120it [00:01, 74.89it/s]128it [00:01, 71.14it/s]136it [00:01, 65.44it/s]143it [00:01, 65.95it/s]150it [00:01, 58.77it/s]157it [00:02, 60.37it/s]164it [00:02, 58.96it/s]170it [00:02, 54.06it/s]177it [00:02, 54.62it/s]183it [00:02, 54.72it/s]192it [00:02, 63.62it/s]201it [00:02, 65.76it/s]209it [00:02, 69.01it/s]219it [00:02, 76.73it/s]227it [00:03, 72.96it/s]240it [00:03, 88.13it/s]253it [00:03, 98.75it/s]264it [00:03, 101.82it/s]275it [00:03, 97.47it/s] 285it [00:03, 96.02it/s]299it [00:03, 105.97it/s]310it [00:03, 104.73it/s]322it [00:03, 107.66it/s]333it [00:04, 99.35it/s] 344it [00:04, 97.97it/s]356it [00:04, 103.88it/s]369it [00:04, 110.96it/s]381it [00:04, 101.58it/s]393it [00:04, 104.62it/s]404it [00:04, 101.41it/s]416it [00:04, 104.87it/s]429it [00:05, 110.06it/s]441it [00:05, 109.94it/s]453it [00:05, 112.26it/s]465it [00:05, 108.38it/s]476it [00:05, 107.19it/s]488it [00:05, 108.94it/s]502it [00:05, 116.40it/s]514it [00:05, 113.28it/s]526it [00:05, 108.85it/s]537it [00:05, 107.21it/s]549it [00:06, 110.18it/s]561it [00:06, 94.04it/s] 571it [00:06, 76.28it/s]580it [00:06, 67.02it/s]590it [00:06, 73.69it/s]599it [00:06, 69.55it/s]607it [00:07, 66.31it/s]614it [00:07, 64.42it/s]621it [00:07, 64.21it/s]632it [00:07, 74.44it/s]640it [00:07, 68.95it/s]648it [00:07, 62.25it/s]655it [00:07, 62.05it/s]664it [00:07, 63.00it/s]674it [00:08, 71.81it/s]685it [00:08, 81.03it/s]694it [00:08, 76.76it/s]708it [00:08, 91.78it/s]718it [00:08, 80.87it/s]728it [00:08, 84.43it/s]739it [00:08, 90.53it/s]749it [00:08, 92.27it/s]761it [00:08, 98.26it/s]772it [00:09, 90.26it/s]783it [00:09, 94.06it/s]793it [00:09, 86.37it/s]807it [00:09, 99.00it/s]818it [00:09, 101.82it/s]831it [00:09, 107.86it/s]843it [00:09, 108.48it/s]854it [00:09, 107.85it/s]865it [00:09, 107.08it/s]876it [00:10, 104.35it/s]887it [00:10, 103.05it/s]898it [00:10, 104.36it/s]909it [00:10, 102.36it/s]924it [00:10, 114.08it/s]936it [00:10, 110.49it/s]948it [00:10, 107.75it/s]960it [00:10, 110.03it/s]972it [00:10, 105.66it/s]984it [00:11, 107.01it/s]995it [00:11, 102.09it/s]1006it [00:11, 95.10it/s]1016it [00:11, 81.97it/s]1025it [00:11, 73.22it/s]1033it [00:11, 71.60it/s]1041it [00:11, 73.02it/s]1051it [00:11, 77.76it/s]1059it [00:12, 76.67it/s]1067it [00:12, 62.80it/s]1074it [00:12, 30.01it/s]1084it [00:12, 39.12it/s]1093it [00:13, 46.33it/s]1103it [00:13, 55.16it/s]1114it [00:13, 66.12it/s]1123it [00:13, 67.58it/s]1132it [00:13, 67.06it/s]1140it [00:13, 67.36it/s]1148it [00:13, 69.48it/s]1161it [00:13, 83.85it/s]1172it [00:14, 89.07it/s]1183it [00:14, 93.01it/s]1194it [00:14, 97.43it/s]1207it [00:14, 102.56it/s]1218it [00:15, 37.68it/s] 1226it [00:15, 42.77it/s]1240it [00:15, 57.46it/s]1252it [00:15, 67.89it/s]1263it [00:15, 71.22it/s]1274it [00:15, 79.00it/s]1284it [00:15, 72.75it/s]1293it [00:15, 75.86it/s]1305it [00:15, 85.20it/s]1315it [00:16, 84.83it/s]1325it [00:16, 74.87it/s]1334it [00:16, 63.10it/s]1342it [00:16, 47.40it/s]1351it [00:16, 52.60it/s]1360it [00:17, 59.55it/s]1367it [00:17, 52.42it/s]1374it [00:17, 55.65it/s]1382it [00:17, 60.94it/s]1389it [00:17, 63.10it/s]1396it [00:17, 61.75it/s]1403it [00:17, 62.99it/s]1412it [00:17, 69.67it/s]1420it [00:17, 68.86it/s]1428it [00:18, 69.89it/s]1436it [00:18, 72.00it/s]1445it [00:18, 76.18it/s]1453it [00:18, 73.72it/s]1463it [00:18, 79.63it/s]1472it [00:18, 79.38it/s]1481it [00:18, 79.72it/s]1493it [00:18, 88.59it/s]1505it [00:18, 93.93it/s]1515it [00:19, 92.77it/s]1531it [00:19, 108.30it/s]1545it [00:19, 115.55it/s]1558it [00:19, 116.76it/s]1572it [00:19, 123.21it/s]1585it [00:19, 115.91it/s]1600it [00:19, 123.71it/s]1613it [00:19, 115.94it/s]1626it [00:19, 113.43it/s]1639it [00:20, 117.84it/s]1654it [00:20, 125.56it/s]1667it [00:20, 120.87it/s]1684it [00:20, 133.42it/s]1701it [00:20, 139.53it/s]1716it [00:20, 117.22it/s]1729it [00:20, 112.94it/s]1741it [00:20, 96.74it/s] 1758it [00:21, 112.28it/s]1771it [00:21, 107.72it/s]1785it [00:21, 111.79it/s]1797it [00:21, 103.88it/s]1808it [00:21, 78.24it/s] 1818it [00:21, 81.44it/s]1828it [00:21, 82.60it/s]1842it [00:22, 95.50it/s]1853it [00:22, 96.66it/s]1864it [00:22, 94.09it/s]1874it [00:22, 87.00it/s]1884it [00:22, 88.40it/s]1897it [00:22, 97.08it/s]1907it [00:22, 87.12it/s]1918it [00:22, 84.85it/s]1927it [00:23, 82.62it/s]1943it [00:23, 101.67it/s]1955it [00:23, 105.96it/s]1967it [00:23, 108.65it/s]1979it [00:23, 108.42it/s]1991it [00:23, 110.81it/s]2006it [00:23, 119.10it/s]2022it [00:23, 129.55it/s]2036it [00:23, 131.00it/s]2050it [00:24, 111.29it/s]2063it [00:24, 114.10it/s]2078it [00:24, 123.55it/s]2094it [00:24, 133.35it/s]2108it [00:24, 125.69it/s]2126it [00:24, 137.35it/s]2142it [00:24, 142.26it/s]2159it [00:24, 149.78it/s]2175it [00:24, 138.06it/s]2190it [00:25, 134.35it/s]2212it [00:25, 154.65it/s]2229it [00:25, 156.53it/s]2258it [00:25, 190.35it/s]2278it [00:25, 189.23it/s]2298it [00:25, 179.73it/s]2317it [00:25, 171.17it/s]2335it [00:25, 162.77it/s]2352it [00:25, 159.64it/s]2369it [00:26, 156.91it/s]2395it [00:26, 184.59it/s]2414it [00:26, 157.41it/s]2435it [00:26, 168.30it/s]2453it [00:26, 151.86it/s]2469it [00:26, 141.06it/s]2485it [00:26, 145.68it/s]2501it [00:26, 139.04it/s]2523it [00:27, 154.85it/s]2539it [00:27, 146.84it/s]2554it [00:27, 113.34it/s]2567it [00:27, 100.33it/s]2582it [00:27, 108.58it/s]2588it [00:27, 93.37it/s] 
Traceback (most recent call last):
  File "/home/users/shouvikm/miniconda3/envs/bpnet/bin/bpnet-gc-background", line 8, in <module>
    sys.exit(get_gc_background_main())
  File "/home/users/shouvikm/miniconda3/envs/bpnet/lib/python3.7/site-packages/bpnet/cli/gc/get_gc_background.py", line 57, in get_gc_background_main
    flank_size=flank_size)
  File "/home/users/shouvikm/miniconda3/envs/bpnet/lib/python3.7/site-packages/bpnet/cli/gc/get_foreground_gc_content.py", line 32, in get_foreground_gc_content
    seq = ref.fetch(chrom, start, end).upper()
  File "pysam/libcfaidx.pyx", line 290, in pysam.libcfaidx.FastaFile.fetch
  File "pysam/libcutils.pyx", line 282, in pysam.libcutils.parse_region
ValueError: start out of range (-528)
