Lmod Warning:
-------------------------------------------------------------------------------
The following dependent module(s) are not currently loaded: curl/8.4.0
(required by: htslib/1.16)
-------------------------------------------------------------------------------




The following have been reloaded with a version change:
  1) curl/8.4.0 => curl/8.17.0     2) openssl/3.0.7 => openssl/3.6.0

2026-05-11 03:51:10.778095: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
Process Process-1:
Traceback (most recent call last):
  File "/home/users/shouvikm/miniconda3/envs/bpnet/lib/python3.7/multiprocessing/process.py", line 297, in _bootstrap
    self.run()
  File "/home/users/shouvikm/miniconda3/envs/bpnet/lib/python3.7/multiprocessing/process.py", line 99, in run
    self._target(*self._args, **self._kwargs)
  File "/home/users/shouvikm/miniconda3/envs/bpnet/lib/python3.7/site-packages/bpnet/train/training.py", line 308, in train_and_validate
    background_weight=mnll_loss_background_sample_weight)
  File "/home/users/shouvikm/miniconda3/envs/bpnet/lib/python3.7/site-packages/bpnet/generators/generators.py", line 922, in __init__
    background_weight, set_bias_as_zero)
  File "/home/users/shouvikm/miniconda3/envs/bpnet/lib/python3.7/site-packages/bpnet/generators/generators.py", line 352, in __init__
    background_weight=background_weight)
  File "/home/users/shouvikm/miniconda3/envs/bpnet/lib/python3.7/site-packages/bpnet/generators/sequtils.py", line 138, in getPeakPositions
    'signal', 'p', 'q', 'summit'])
  File "/home/users/shouvikm/miniconda3/envs/bpnet/lib/python3.7/site-packages/pandas/util/_decorators.py", line 311, in wrapper
    return func(*args, **kwargs)
  File "/home/users/shouvikm/miniconda3/envs/bpnet/lib/python3.7/site-packages/pandas/io/parsers/readers.py", line 586, in read_csv
    return _read(filepath_or_buffer, kwds)
  File "/home/users/shouvikm/miniconda3/envs/bpnet/lib/python3.7/site-packages/pandas/io/parsers/readers.py", line 482, in _read
    parser = TextFileReader(filepath_or_buffer, **kwds)
  File "/home/users/shouvikm/miniconda3/envs/bpnet/lib/python3.7/site-packages/pandas/io/parsers/readers.py", line 811, in __init__
    self._engine = self._make_engine(self.engine)
  File "/home/users/shouvikm/miniconda3/envs/bpnet/lib/python3.7/site-packages/pandas/io/parsers/readers.py", line 1040, in _make_engine
    return mapping[engine](self.f, **self.options)  # type: ignore[call-arg]
  File "/home/users/shouvikm/miniconda3/envs/bpnet/lib/python3.7/site-packages/pandas/io/parsers/c_parser_wrapper.py", line 51, in __init__
    self._open_handles(src, kwds)
  File "/home/users/shouvikm/miniconda3/envs/bpnet/lib/python3.7/site-packages/pandas/io/parsers/base_parser.py", line 229, in _open_handles
    errors=kwds.get("encoding_errors", "strict"),
  File "/home/users/shouvikm/miniconda3/envs/bpnet/lib/python3.7/site-packages/pandas/io/common.py", line 707, in get_handle
    newline="",
FileNotFoundError: [Errno 2] No such file or directory: '/oak/stanford/groups/kasowski/data/Cell_Lines_Ped_Leukemia/KMT2A/pooled_replicates/ML2_KMT2A_C/idr_peaks/gc_negatives.bed'
2026-05-11 04:00:39.549340: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
Traceback (most recent call last):
  File "/home/users/shouvikm/miniconda3/envs/bpnet/bin/bpnet-predict", line 8, in <module>
    sys.exit(predict_main())
  File "/home/users/shouvikm/miniconda3/envs/bpnet/lib/python3.7/site-packages/bpnet/cli/predict.py", line 918, in predict_main
    predict(args, pred_dir)
  File "/home/users/shouvikm/miniconda3/envs/bpnet/lib/python3.7/site-packages/bpnet/cli/predict.py", line 380, in predict
    model = load_model(args.model)
  File "/home/users/shouvikm/miniconda3/envs/bpnet/lib/python3.7/site-packages/tensorflow/python/keras/saving/save.py", line 211, in load_model
    loader_impl.parse_saved_model(filepath)
  File "/home/users/shouvikm/miniconda3/envs/bpnet/lib/python3.7/site-packages/tensorflow/python/saved_model/loader_impl.py", line 114, in parse_saved_model
    constants.SAVED_MODEL_FILENAME_PB))
OSError: SavedModel file does not exist at: models/ML2_KMT2A_C/fold_1/model_split000/{saved_model.pbtxt|saved_model.pb}
2026-05-11 04:13:12.157346: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
RuntimeError: module compiled against API version 0xe but this version of numpy is 0xd
File models/ML2_KMT2A_C/fold_1/model_split000 does not exist