INFO:2026-07-10 00:04:32,771:[predict.py:399 - predict() ] SEQGEN Class Name: MBPNetSequenceGenerator INFO:2026-07-10 00:04:32,782:[generators.py:483 - _pad_samples() ] mode 'test': Data size (after padding 111 samples) - 256 INFO:2026-07-10 00:04:32,785:[predict.py:460 - predict() ] Writing predictions to predictions/SKNO-1_RUNX1_2/fold_4/model_split000_predictions.h5 DEBUG:2026-07-10 00:04:32,849:[generators.py:731 - _epoch_run() ] test spawning process 0, df size (128, 3) sum(num_batches) 2 DEBUG:2026-07-10 00:04:32,923:[generators.py:731 - _epoch_run() ] test spawning process 1, df size (128, 3) sum(num_batches) 4 DEBUG:2026-07-10 00:04:32,986:[generators.py:757 - _epoch_run() ] test num_batches list [2, 2] DEBUG:2026-07-10 00:04:32,986:[generators.py:770 - _epoch_run() ] test starting stealer thread 0 [2] DEBUG:2026-07-10 00:04:32,987:[generators.py:770 - _epoch_run() ] test starting stealer thread 1 [2] DEBUG:2026-07-10 00:04:34,043:[generators.py:676 - _stealer() ] test stealer thread 1 got 2 batches from mpq DEBUG:2026-07-10 00:04:34,029:[generators.py:652 - _proc_target() ] test process 1 put 2 batches into mpq DEBUG:2026-07-10 00:04:34,112:[generators.py:652 - _proc_target() ] test process 0 put 2 batches into mpq DEBUG:2026-07-10 00:04:34,127:[generators.py:676 - _stealer() ] test stealer thread 0 got 2 batches from mpq DEBUG:2026-07-10 00:09:58,063:[generators.py:814 - gen() ] test waiting to join process 0 DEBUG:2026-07-10 00:09:58,064:[generators.py:819 - gen() ] test waiting to join thread 0 DEBUG:2026-07-10 00:09:58,064:[generators.py:823 - gen() ] test join complete for process 0 DEBUG:2026-07-10 00:09:58,064:[generators.py:814 - gen() ] test waiting to join process 1 DEBUG:2026-07-10 00:09:58,064:[generators.py:819 - gen() ] test waiting to join thread 1 DEBUG:2026-07-10 00:09:58,064:[generators.py:823 - gen() ] test join complete for process 1 DEBUG:2026-07-10 00:09:58,064:[generators.py:826 - gen() ] test Finished join for epoch DEBUG:2026-07-10 00:09:58,064:[generators.py:828 - gen() ] test Ready for next epoch INFO:2026-07-10 00:09:58,064:[predict.py:731 - predict() ] Writing to h5 file ... INFO:2026-07-10 00:09:58,123:[predict.py:747 - predict() ] Elapsed Time: 325.33641028404236 secs INFO:2026-07-10 00:09:58,123:[predict.py:751 - predict() ] Generating predicted profile bigWigs ... INFO:2026-07-10 00:09:58,123:[predict.py:753 - predict() ] predictions shape - (145, 1000, 2) INFO:2026-07-10 00:09:58,127:[predict.py:775 - predict() ] bigWig HEADER - [('chr1', 248956422), ('chr10', 133797422), ('chr11', 135086622), ('chr12', 133275309), ('chr13', 114364328), ('chr14', 107043718), ('chr15', 101991189), ('chr16', 90338345), ('chr17', 83257441), ('chr18', 80373285), ('chr19', 58617616), ('chr2', 242193529), ('chr20', 64444167), ('chr21', 46709983), ('chr22', 50818468), ('chr3', 198295559), ('chr4', 190214555), ('chr5', 181538259), ('chr6', 170805979), ('chr7', 159345973), ('chr8', 145138636), ('chr9', 138394717), ('chrM', 16569), ('chrX', 156040895), ('chrY', 57227415)] INFO:2026-07-10 00:09:58,453:[predict.py:801 - predict() ] min max median INFO:2026-07-10 00:09:58,453:[predict.py:806 - predict() ] mnll 0.000 0.702 0.024 INFO:2026-07-10 00:09:58,453:[predict.py:811 - predict() ] cross_entropy 0.000 0.702 0.024 INFO:2026-07-10 00:09:58,453:[predict.py:816 - predict() ] jsd 0.038 0.555 0.305 INFO:2026-07-10 00:09:58,453:[predict.py:821 - predict() ] spearman -0.473 0.761 0.136 INFO:2026-07-10 00:09:58,453:[predict.py:826 - predict() ] pearson -0.634 0.730 0.175 INFO:2026-07-10 00:09:58,453:[predict.py:831 - predict() ] mse 0.017 12.688 0.063 INFO:2026-07-10 00:09:58,453:[predict.py:833 - predict() ] ============================================== INFO:2026-07-10 00:09:58,460:[predict.py:848 - predict() ] counts pearson: [0.08706441 0.07132156] INFO:2026-07-10 00:09:58,460:[predict.py:849 - predict() ] counts spearman: [-0.10647795 -0.06860785] INFO:2026-07-10 15:20:34,831:[predict.py:399 - predict() ] SEQGEN Class Name: MBPNetSequenceGenerator INFO:2026-07-10 15:20:34,861:[generators.py:483 - _pad_samples() ] mode 'test': Data size (after padding 111 samples) - 256 INFO:2026-07-10 15:20:34,887:[predict.py:460 - predict() ] Writing predictions to predictions/SKNO-1_RUNX1_2/fold_4/model_split000_predictions.h5 DEBUG:2026-07-10 15:20:34,910:[generators.py:731 - _epoch_run() ] test spawning process 0, df size (128, 3) sum(num_batches) 2 DEBUG:2026-07-10 15:20:34,948:[generators.py:731 - _epoch_run() ] test spawning process 1, df size (128, 3) sum(num_batches) 4 DEBUG:2026-07-10 15:20:34,978:[generators.py:757 - _epoch_run() ] test num_batches list [2, 2] DEBUG:2026-07-10 15:20:34,978:[generators.py:770 - _epoch_run() ] test starting stealer thread 0 [2] DEBUG:2026-07-10 15:20:34,979:[generators.py:770 - _epoch_run() ] test starting stealer thread 1 [2] DEBUG:2026-07-10 15:20:36,345:[generators.py:652 - _proc_target() ] test process 1 put 2 batches into mpq DEBUG:2026-07-10 15:20:36,365:[generators.py:676 - _stealer() ] test stealer thread 1 got 2 batches from mpq DEBUG:2026-07-10 15:20:36,464:[generators.py:652 - _proc_target() ] test process 0 put 2 batches into mpq DEBUG:2026-07-10 15:20:36,484:[generators.py:676 - _stealer() ] test stealer thread 0 got 2 batches from mpq DEBUG:2026-07-10 15:20:52,573:[generators.py:814 - gen() ] test waiting to join process 0 DEBUG:2026-07-10 15:20:52,574:[generators.py:819 - gen() ] test waiting to join thread 0 DEBUG:2026-07-10 15:20:52,574:[generators.py:823 - gen() ] test join complete for process 0 DEBUG:2026-07-10 15:20:52,574:[generators.py:814 - gen() ] test waiting to join process 1 DEBUG:2026-07-10 15:20:52,574:[generators.py:819 - gen() ] test waiting to join thread 1 DEBUG:2026-07-10 15:20:52,574:[generators.py:823 - gen() ] test join complete for process 1 DEBUG:2026-07-10 15:20:52,574:[generators.py:826 - gen() ] test Finished join for epoch DEBUG:2026-07-10 15:20:52,574:[generators.py:828 - gen() ] test Ready for next epoch INFO:2026-07-10 15:20:52,575:[predict.py:731 - predict() ] Writing to h5 file ... INFO:2026-07-10 15:20:52,677:[predict.py:747 - predict() ] Elapsed Time: 17.78235101699829 secs INFO:2026-07-10 15:20:52,677:[predict.py:751 - predict() ] Generating predicted profile bigWigs ... INFO:2026-07-10 15:20:52,677:[predict.py:753 - predict() ] predictions shape - (145, 1000, 2) INFO:2026-07-10 15:20:52,682:[predict.py:775 - predict() ] bigWig HEADER - [('chr1', 248956422), ('chr10', 133797422), ('chr11', 135086622), ('chr12', 133275309), ('chr13', 114364328), ('chr14', 107043718), ('chr15', 101991189), ('chr16', 90338345), ('chr17', 83257441), ('chr18', 80373285), ('chr19', 58617616), ('chr2', 242193529), ('chr20', 64444167), ('chr21', 46709983), ('chr22', 50818468), ('chr3', 198295559), ('chr4', 190214555), ('chr5', 181538259), ('chr6', 170805979), ('chr7', 159345973), ('chr8', 145138636), ('chr9', 138394717), ('chrM', 16569), ('chrX', 156040895), ('chrY', 57227415)] INFO:2026-07-10 15:20:53,834:[predict.py:801 - predict() ] min max median INFO:2026-07-10 15:20:53,834:[predict.py:806 - predict() ] mnll 0.000 0.442 0.013 INFO:2026-07-10 15:20:53,835:[predict.py:811 - predict() ] cross_entropy 0.000 0.442 0.013 INFO:2026-07-10 15:20:53,835:[predict.py:816 - predict() ] jsd 0.060 0.508 0.277 INFO:2026-07-10 15:20:53,836:[predict.py:821 - predict() ] spearman -0.141 0.408 0.043 INFO:2026-07-10 15:20:53,836:[predict.py:826 - predict() ] pearson -0.255 0.208 0.030 INFO:2026-07-10 15:20:53,837:[predict.py:831 - predict() ] mse 0.017 12.698 0.061 INFO:2026-07-10 15:20:53,837:[predict.py:833 - predict() ] ============================================== INFO:2026-07-10 15:20:53,895:[predict.py:848 - predict() ] counts pearson: [0.23900356 0.22564749] INFO:2026-07-10 15:20:53,895:[predict.py:849 - predict() ] counts spearman: [-0.06419864 -0.04086937]