INFO:2026-07-09 23:03:35,079:[predict.py:399 - predict() ] SEQGEN Class Name: MBPNetSequenceGenerator INFO:2026-07-09 23:03:35,090:[generators.py:483 - _pad_samples() ] mode 'test': Data size (after padding 111 samples) - 256 INFO:2026-07-09 23:03:35,094:[predict.py:460 - predict() ] Writing predictions to predictions/SKNO-1_RUNX1_2/fold_0/model_split000_predictions.h5 DEBUG:2026-07-09 23:03:35,114:[generators.py:731 - _epoch_run() ] test spawning process 0, df size (128, 3) sum(num_batches) 2 DEBUG:2026-07-09 23:03:35,142:[generators.py:731 - _epoch_run() ] test spawning process 1, df size (128, 3) sum(num_batches) 4 DEBUG:2026-07-09 23:03:35,166:[generators.py:757 - _epoch_run() ] test num_batches list [2, 2] DEBUG:2026-07-09 23:03:35,166:[generators.py:770 - _epoch_run() ] test starting stealer thread 0 [2] DEBUG:2026-07-09 23:03:35,166:[generators.py:770 - _epoch_run() ] test starting stealer thread 1 [2] DEBUG:2026-07-09 23:03:35,575:[generators.py:652 - _proc_target() ] test process 0 put 2 batches into mpq DEBUG:2026-07-09 23:03:35,601:[generators.py:676 - _stealer() ] test stealer thread 0 got 2 batches from mpq DEBUG:2026-07-09 23:03:35,736:[generators.py:652 - _proc_target() ] test process 1 put 2 batches into mpq DEBUG:2026-07-09 23:03:35,750:[generators.py:676 - _stealer() ] test stealer thread 1 got 2 batches from mpq DEBUG:2026-07-09 23:04:01,470:[generators.py:814 - gen() ] test waiting to join process 0 DEBUG:2026-07-09 23:04:01,470:[generators.py:819 - gen() ] test waiting to join thread 0 DEBUG:2026-07-09 23:04:01,470:[generators.py:823 - gen() ] test join complete for process 0 DEBUG:2026-07-09 23:04:01,471:[generators.py:814 - gen() ] test waiting to join process 1 DEBUG:2026-07-09 23:04:01,471:[generators.py:819 - gen() ] test waiting to join thread 1 DEBUG:2026-07-09 23:04:01,471:[generators.py:823 - gen() ] test join complete for process 1 DEBUG:2026-07-09 23:04:01,471:[generators.py:826 - gen() ] test Finished join for epoch DEBUG:2026-07-09 23:04:01,471:[generators.py:828 - gen() ] test Ready for next epoch INFO:2026-07-09 23:04:01,471:[predict.py:731 - predict() ] Writing to h5 file ... INFO:2026-07-09 23:04:01,538:[predict.py:747 - predict() ] Elapsed Time: 26.44211196899414 secs INFO:2026-07-09 23:04:01,538:[predict.py:751 - predict() ] Generating predicted profile bigWigs ... INFO:2026-07-09 23:04:01,538:[predict.py:753 - predict() ] predictions shape - (145, 1000, 2) INFO:2026-07-09 23:04:01,542:[predict.py:775 - predict() ] bigWig HEADER - [('chr1', 248956422), ('chr10', 133797422), ('chr11', 135086622), ('chr12', 133275309), ('chr13', 114364328), ('chr14', 107043718), ('chr15', 101991189), ('chr16', 90338345), ('chr17', 83257441), ('chr18', 80373285), ('chr19', 58617616), ('chr2', 242193529), ('chr20', 64444167), ('chr21', 46709983), ('chr22', 50818468), ('chr3', 198295559), ('chr4', 190214555), ('chr5', 181538259), ('chr6', 170805979), ('chr7', 159345973), ('chr8', 145138636), ('chr9', 138394717), ('chrM', 16569), ('chrX', 156040895), ('chrY', 57227415)] INFO:2026-07-09 23:04:01,911:[predict.py:801 - predict() ] min max median INFO:2026-07-09 23:04:01,911:[predict.py:806 - predict() ] mnll 0.000 0.912 0.101 INFO:2026-07-09 23:04:01,911:[predict.py:811 - predict() ] cross_entropy 0.000 0.912 0.101 INFO:2026-07-09 23:04:01,911:[predict.py:816 - predict() ] jsd 0.122 0.676 0.330 INFO:2026-07-09 23:04:01,911:[predict.py:821 - predict() ] spearman -0.159 0.843 0.102 INFO:2026-07-09 23:04:01,911:[predict.py:826 - predict() ] pearson -0.319 0.877 0.100 INFO:2026-07-09 23:04:01,912:[predict.py:831 - predict() ] mse 0.018 4.877 0.060 INFO:2026-07-09 23:04:01,912:[predict.py:833 - predict() ] ============================================== INFO:2026-07-09 23:04:01,920:[predict.py:848 - predict() ] counts pearson: [0.69412594 0.71075201] INFO:2026-07-09 23:04:01,920:[predict.py:849 - predict() ] counts spearman: [0.52516404 0.53905552] INFO:2026-07-10 15:17:25,538:[predict.py:399 - predict() ] SEQGEN Class Name: MBPNetSequenceGenerator INFO:2026-07-10 15:17:25,562:[generators.py:483 - _pad_samples() ] mode 'test': Data size (after padding 111 samples) - 256 INFO:2026-07-10 15:17:25,581:[predict.py:460 - predict() ] Writing predictions to predictions/SKNO-1_RUNX1_2/fold_0/model_split000_predictions.h5 DEBUG:2026-07-10 15:17:25,653:[generators.py:731 - _epoch_run() ] test spawning process 0, df size (128, 3) sum(num_batches) 2 DEBUG:2026-07-10 15:17:25,695:[generators.py:731 - _epoch_run() ] test spawning process 1, df size (128, 3) sum(num_batches) 4 DEBUG:2026-07-10 15:17:25,718:[generators.py:757 - _epoch_run() ] test num_batches list [2, 2] DEBUG:2026-07-10 15:17:25,719:[generators.py:770 - _epoch_run() ] test starting stealer thread 0 [2] DEBUG:2026-07-10 15:17:25,719:[generators.py:770 - _epoch_run() ] test starting stealer thread 1 [2] DEBUG:2026-07-10 15:17:26,714:[generators.py:652 - _proc_target() ] test process 1 put 2 batches into mpq DEBUG:2026-07-10 15:17:26,728:[generators.py:676 - _stealer() ] test stealer thread 1 got 2 batches from mpq DEBUG:2026-07-10 15:17:26,770:[generators.py:652 - _proc_target() ] test process 0 put 2 batches into mpq DEBUG:2026-07-10 15:17:26,783:[generators.py:676 - _stealer() ] test stealer thread 0 got 2 batches from mpq DEBUG:2026-07-10 15:18:03,079:[generators.py:814 - gen() ] test waiting to join process 0 DEBUG:2026-07-10 15:18:03,079:[generators.py:819 - gen() ] test waiting to join thread 0 DEBUG:2026-07-10 15:18:03,079:[generators.py:823 - gen() ] test join complete for process 0 DEBUG:2026-07-10 15:18:03,079:[generators.py:814 - gen() ] test waiting to join process 1 DEBUG:2026-07-10 15:18:03,079:[generators.py:819 - gen() ] test waiting to join thread 1 DEBUG:2026-07-10 15:18:03,079:[generators.py:823 - gen() ] test join complete for process 1 DEBUG:2026-07-10 15:18:03,080:[generators.py:826 - gen() ] test Finished join for epoch DEBUG:2026-07-10 15:18:03,080:[generators.py:828 - gen() ] test Ready for next epoch INFO:2026-07-10 15:18:03,080:[predict.py:731 - predict() ] Writing to h5 file ... INFO:2026-07-10 15:18:03,143:[predict.py:747 - predict() ] Elapsed Time: 37.559858322143555 secs INFO:2026-07-10 15:18:03,143:[predict.py:751 - predict() ] Generating predicted profile bigWigs ... INFO:2026-07-10 15:18:03,143:[predict.py:753 - predict() ] predictions shape - (145, 1000, 2) INFO:2026-07-10 15:18:03,146:[predict.py:775 - predict() ] bigWig HEADER - [('chr1', 248956422), ('chr10', 133797422), ('chr11', 135086622), ('chr12', 133275309), ('chr13', 114364328), ('chr14', 107043718), ('chr15', 101991189), ('chr16', 90338345), ('chr17', 83257441), ('chr18', 80373285), ('chr19', 58617616), ('chr2', 242193529), ('chr20', 64444167), ('chr21', 46709983), ('chr22', 50818468), ('chr3', 198295559), ('chr4', 190214555), ('chr5', 181538259), ('chr6', 170805979), ('chr7', 159345973), ('chr8', 145138636), ('chr9', 138394717), ('chrM', 16569), ('chrX', 156040895), ('chrY', 57227415)] INFO:2026-07-10 15:18:04,055:[predict.py:801 - predict() ] min max median INFO:2026-07-10 15:18:04,056:[predict.py:806 - predict() ] mnll 0.000 0.911 0.095 INFO:2026-07-10 15:18:04,056:[predict.py:811 - predict() ] cross_entropy 0.000 0.911 0.095 INFO:2026-07-10 15:18:04,056:[predict.py:816 - predict() ] jsd 0.120 0.670 0.333 INFO:2026-07-10 15:18:04,056:[predict.py:821 - predict() ] spearman -0.170 0.864 0.097 INFO:2026-07-10 15:18:04,056:[predict.py:826 - predict() ] pearson -0.314 0.882 0.102 INFO:2026-07-10 15:18:04,056:[predict.py:831 - predict() ] mse 0.018 4.337 0.059 INFO:2026-07-10 15:18:04,056:[predict.py:833 - predict() ] ============================================== INFO:2026-07-10 15:18:05,078:[predict.py:848 - predict() ] counts pearson: [0.70312434 0.71922636] INFO:2026-07-10 15:18:05,078:[predict.py:849 - predict() ] counts spearman: [0.52690254 0.54285952]