INFO:2026-07-10 00:14:42,380:[predict.py:399 - predict() ] SEQGEN Class Name: MBPNetSequenceGenerator INFO:2026-07-10 00:14:42,425:[generators.py:483 - _pad_samples() ] mode 'test': Data size (after padding 90 samples) - 20992 INFO:2026-07-10 00:14:42,429:[predict.py:460 - predict() ] Writing predictions to predictions/SKNO-1_RUNX1/fold_4/model_split000_predictions.h5 DEBUG:2026-07-10 00:14:42,447:[generators.py:731 - _epoch_run() ] test spawning process 0, df size (10496, 3) sum(num_batches) 164 DEBUG:2026-07-10 00:14:42,476:[generators.py:731 - _epoch_run() ] test spawning process 1, df size (10496, 3) sum(num_batches) 328 DEBUG:2026-07-10 00:14:42,499:[generators.py:757 - _epoch_run() ] test num_batches list [164, 164] DEBUG:2026-07-10 00:14:42,499:[generators.py:770 - _epoch_run() ] test starting stealer thread 0 [164] DEBUG:2026-07-10 00:14:42,500:[generators.py:770 - _epoch_run() ] test starting stealer thread 1 [164] DEBUG:2026-07-10 00:15:11,291:[generators.py:652 - _proc_target() ] test process 0 put 164 batches into mpq DEBUG:2026-07-10 00:15:11,351:[generators.py:676 - _stealer() ] test stealer thread 0 got 164 batches from mpq DEBUG:2026-07-10 00:15:11,567:[generators.py:676 - _stealer() ] test stealer thread 1 got 164 batches from mpq DEBUG:2026-07-10 00:15:11,552:[generators.py:652 - _proc_target() ] test process 1 put 164 batches into mpq DEBUG:2026-07-10 00:16:46,354:[generators.py:814 - gen() ] test waiting to join process 0 DEBUG:2026-07-10 00:16:46,355:[generators.py:819 - gen() ] test waiting to join thread 0 DEBUG:2026-07-10 00:16:46,355:[generators.py:823 - gen() ] test join complete for process 0 DEBUG:2026-07-10 00:16:46,355:[generators.py:814 - gen() ] test waiting to join process 1 DEBUG:2026-07-10 00:16:46,355:[generators.py:819 - gen() ] test waiting to join thread 1 DEBUG:2026-07-10 00:16:46,355:[generators.py:823 - gen() ] test join complete for process 1 DEBUG:2026-07-10 00:16:46,355:[generators.py:826 - gen() ] test Finished join for epoch DEBUG:2026-07-10 00:16:46,355:[generators.py:828 - gen() ] test Ready for next epoch INFO:2026-07-10 00:16:46,355:[predict.py:731 - predict() ] Writing to h5 file ... INFO:2026-07-10 00:16:56,746:[predict.py:747 - predict() ] Elapsed Time: 134.31469297409058 secs INFO:2026-07-10 00:16:56,746:[predict.py:751 - predict() ] Generating predicted profile bigWigs ... INFO:2026-07-10 00:16:56,746:[predict.py:753 - predict() ] predictions shape - (20902, 1000, 2) INFO:2026-07-10 00:16:56,749:[predict.py:775 - predict() ] bigWig HEADER - [('chr1', 248956422), ('chr10', 133797422), ('chr11', 135086622), ('chr12', 133275309), ('chr13', 114364328), ('chr14', 107043718), ('chr15', 101991189), ('chr16', 90338345), ('chr17', 83257441), ('chr18', 80373285), ('chr19', 58617616), ('chr2', 242193529), ('chr20', 64444167), ('chr21', 46709983), ('chr22', 50818468), ('chr3', 198295559), ('chr4', 190214555), ('chr5', 181538259), ('chr6', 170805979), ('chr7', 159345973), ('chr8', 145138636), ('chr9', 138394717), ('chrM', 16569), ('chrX', 156040895), ('chrY', 57227415)] INFO:2026-07-10 00:17:49,010:[predict.py:801 - predict() ] min max median INFO:2026-07-10 00:17:49,011:[predict.py:806 - predict() ] mnll 0.000 0.817 0.173 INFO:2026-07-10 00:17:49,012:[predict.py:811 - predict() ] cross_entropy 0.000 0.817 0.173 INFO:2026-07-10 00:17:49,012:[predict.py:816 - predict() ] jsd 0.000 0.792 0.477 INFO:2026-07-10 00:17:49,013:[predict.py:821 - predict() ] spearman -0.368 0.973 0.598 INFO:2026-07-10 00:17:49,014:[predict.py:826 - predict() ] pearson -0.708 0.956 0.641 INFO:2026-07-10 00:17:49,014:[predict.py:831 - predict() ] mse 0.000 41.642 0.298 INFO:2026-07-10 00:17:49,015:[predict.py:833 - predict() ] ============================================== INFO:2026-07-10 00:17:49,035:[predict.py:848 - predict() ] counts pearson: [0.62896 0.62653278] INFO:2026-07-10 00:17:49,035:[predict.py:849 - predict() ] counts spearman: [0.64557496 0.64283107] INFO:2026-07-10 16:31:18,524:[predict.py:399 - predict() ] SEQGEN Class Name: MBPNetSequenceGenerator INFO:2026-07-10 16:31:18,592:[generators.py:483 - _pad_samples() ] mode 'test': Data size (after padding 90 samples) - 20992 INFO:2026-07-10 16:31:18,765:[predict.py:460 - predict() ] Writing predictions to predictions/SKNO-1_RUNX1/fold_4/model_split000_predictions.h5 DEBUG:2026-07-10 16:31:18,779:[generators.py:731 - _epoch_run() ] test spawning process 0, df size (10496, 3) sum(num_batches) 164 DEBUG:2026-07-10 16:31:18,848:[generators.py:731 - _epoch_run() ] test spawning process 1, df size (10496, 3) sum(num_batches) 328 DEBUG:2026-07-10 16:31:18,973:[generators.py:757 - _epoch_run() ] test num_batches list [164, 164] DEBUG:2026-07-10 16:31:18,974:[generators.py:770 - _epoch_run() ] test starting stealer thread 0 [164] DEBUG:2026-07-10 16:31:18,983:[generators.py:770 - _epoch_run() ] test starting stealer thread 1 [164] DEBUG:2026-07-10 16:32:23,435:[generators.py:652 - _proc_target() ] test process 0 put 164 batches into mpq DEBUG:2026-07-10 16:32:23,477:[generators.py:676 - _stealer() ] test stealer thread 0 got 164 batches from mpq DEBUG:2026-07-10 16:32:24,475:[generators.py:652 - _proc_target() ] test process 1 put 164 batches into mpq DEBUG:2026-07-10 16:32:24,513:[generators.py:676 - _stealer() ] test stealer thread 1 got 164 batches from mpq DEBUG:2026-07-10 16:43:09,146:[generators.py:814 - gen() ] test waiting to join process 0 DEBUG:2026-07-10 16:43:09,146:[generators.py:819 - gen() ] test waiting to join thread 0 DEBUG:2026-07-10 16:43:09,146:[generators.py:823 - gen() ] test join complete for process 0 DEBUG:2026-07-10 16:43:09,146:[generators.py:814 - gen() ] test waiting to join process 1 DEBUG:2026-07-10 16:43:09,146:[generators.py:819 - gen() ] test waiting to join thread 1 DEBUG:2026-07-10 16:43:09,146:[generators.py:823 - gen() ] test join complete for process 1 DEBUG:2026-07-10 16:43:09,147:[generators.py:826 - gen() ] test Finished join for epoch DEBUG:2026-07-10 16:43:09,147:[generators.py:828 - gen() ] test Ready for next epoch INFO:2026-07-10 16:43:09,147:[predict.py:731 - predict() ] Writing to h5 file ... INFO:2026-07-10 16:43:20,413:[predict.py:747 - predict() ] Elapsed Time: 721.6463840007782 secs INFO:2026-07-10 16:43:20,414:[predict.py:751 - predict() ] Generating predicted profile bigWigs ... INFO:2026-07-10 16:43:20,414:[predict.py:753 - predict() ] predictions shape - (20902, 1000, 2) INFO:2026-07-10 16:43:20,417:[predict.py:775 - predict() ] bigWig HEADER - [('chr1', 248956422), ('chr10', 133797422), ('chr11', 135086622), ('chr12', 133275309), ('chr13', 114364328), ('chr14', 107043718), ('chr15', 101991189), ('chr16', 90338345), ('chr17', 83257441), ('chr18', 80373285), ('chr19', 58617616), ('chr2', 242193529), ('chr20', 64444167), ('chr21', 46709983), ('chr22', 50818468), ('chr3', 198295559), ('chr4', 190214555), ('chr5', 181538259), ('chr6', 170805979), ('chr7', 159345973), ('chr8', 145138636), ('chr9', 138394717), ('chrM', 16569), ('chrX', 156040895), ('chrY', 57227415)] INFO:2026-07-10 16:44:09,683:[predict.py:801 - predict() ] min max median INFO:2026-07-10 16:44:09,684:[predict.py:806 - predict() ] mnll 0.000 0.829 0.175 INFO:2026-07-10 16:44:09,684:[predict.py:811 - predict() ] cross_entropy 0.000 0.829 0.175 INFO:2026-07-10 16:44:09,685:[predict.py:816 - predict() ] jsd 0.000 0.798 0.477 INFO:2026-07-10 16:44:09,685:[predict.py:821 - predict() ] spearman -0.290 0.977 0.602 INFO:2026-07-10 16:44:09,686:[predict.py:826 - predict() ] pearson -0.598 0.954 0.642 INFO:2026-07-10 16:44:09,687:[predict.py:831 - predict() ] mse 0.000 43.483 0.297 INFO:2026-07-10 16:44:09,687:[predict.py:833 - predict() ] ============================================== INFO:2026-07-10 16:44:10,243:[predict.py:848 - predict() ] counts pearson: [0.62740393 0.62263122] INFO:2026-07-10 16:44:10,243:[predict.py:849 - predict() ] counts spearman: [0.64459405 0.64110896]