INFO:2026-07-10 00:12:24,575:[predict.py:399 - predict() ] SEQGEN Class Name: MBPNetSequenceGenerator INFO:2026-07-10 00:12:24,620:[generators.py:483 - _pad_samples() ] mode 'test': Data size (after padding 90 samples) - 20992 INFO:2026-07-10 00:12:24,624:[predict.py:460 - predict() ] Writing predictions to predictions/SKNO-1_RUNX1/fold_3/model_split000_predictions.h5 DEBUG:2026-07-10 00:12:24,640:[generators.py:731 - _epoch_run() ] test spawning process 0, df size (10496, 3) sum(num_batches) 164 DEBUG:2026-07-10 00:12:24,681:[generators.py:731 - _epoch_run() ] test spawning process 1, df size (10496, 3) sum(num_batches) 328 DEBUG:2026-07-10 00:12:24,746:[generators.py:757 - _epoch_run() ] test num_batches list [164, 164] DEBUG:2026-07-10 00:12:24,747:[generators.py:770 - _epoch_run() ] test starting stealer thread 0 [164] DEBUG:2026-07-10 00:12:24,755:[generators.py:770 - _epoch_run() ] test starting stealer thread 1 [164] DEBUG:2026-07-10 00:13:23,129:[generators.py:676 - _stealer() ] test stealer thread 0 got 164 batches from mpq DEBUG:2026-07-10 00:13:23,117:[generators.py:652 - _proc_target() ] test process 0 put 164 batches into mpq DEBUG:2026-07-10 00:13:23,652:[generators.py:676 - _stealer() ] test stealer thread 1 got 164 batches from mpq DEBUG:2026-07-10 00:13:23,640:[generators.py:652 - _proc_target() ] test process 1 put 164 batches into mpq DEBUG:2026-07-10 00:18:53,344:[generators.py:814 - gen() ] test waiting to join process 0 DEBUG:2026-07-10 00:18:53,344:[generators.py:819 - gen() ] test waiting to join thread 0 DEBUG:2026-07-10 00:18:53,344:[generators.py:823 - gen() ] test join complete for process 0 DEBUG:2026-07-10 00:18:53,344:[generators.py:814 - gen() ] test waiting to join process 1 DEBUG:2026-07-10 00:18:53,344:[generators.py:819 - gen() ] test waiting to join thread 1 DEBUG:2026-07-10 00:18:53,344:[generators.py:823 - gen() ] test join complete for process 1 DEBUG:2026-07-10 00:18:53,344:[generators.py:826 - gen() ] test Finished join for epoch DEBUG:2026-07-10 00:18:53,344:[generators.py:828 - gen() ] test Ready for next epoch INFO:2026-07-10 00:18:53,345:[predict.py:731 - predict() ] Writing to h5 file ... INFO:2026-07-10 00:19:05,310:[predict.py:747 - predict() ] Elapsed Time: 400.68503522872925 secs INFO:2026-07-10 00:19:05,310:[predict.py:751 - predict() ] Generating predicted profile bigWigs ... INFO:2026-07-10 00:19:05,310:[predict.py:753 - predict() ] predictions shape - (20902, 1000, 2) INFO:2026-07-10 00:19:05,314:[predict.py:775 - predict() ] bigWig HEADER - [('chr1', 248956422), ('chr10', 133797422), ('chr11', 135086622), ('chr12', 133275309), ('chr13', 114364328), ('chr14', 107043718), ('chr15', 101991189), ('chr16', 90338345), ('chr17', 83257441), ('chr18', 80373285), ('chr19', 58617616), ('chr2', 242193529), ('chr20', 64444167), ('chr21', 46709983), ('chr22', 50818468), ('chr3', 198295559), ('chr4', 190214555), ('chr5', 181538259), ('chr6', 170805979), ('chr7', 159345973), ('chr8', 145138636), ('chr9', 138394717), ('chrM', 16569), ('chrX', 156040895), ('chrY', 57227415)] INFO:2026-07-10 00:19:54,975:[predict.py:801 - predict() ] min max median INFO:2026-07-10 00:19:54,976:[predict.py:806 - predict() ] mnll 0.000 0.825 0.177 INFO:2026-07-10 00:19:54,976:[predict.py:811 - predict() ] cross_entropy 0.000 0.825 0.177 INFO:2026-07-10 00:19:54,977:[predict.py:816 - predict() ] jsd 0.000 0.801 0.480 INFO:2026-07-10 00:19:54,978:[predict.py:821 - predict() ] spearman -0.336 0.973 0.607 INFO:2026-07-10 00:19:54,978:[predict.py:826 - predict() ] pearson -0.576 0.960 0.644 INFO:2026-07-10 00:19:54,979:[predict.py:831 - predict() ] mse 0.000 40.086 0.299 INFO:2026-07-10 00:19:54,979:[predict.py:833 - predict() ] ============================================== INFO:2026-07-10 00:19:55,011:[predict.py:848 - predict() ] counts pearson: [0.65201482 0.64873412] INFO:2026-07-10 00:19:55,011:[predict.py:849 - predict() ] counts spearman: [0.66651572 0.66323702] INFO:2026-07-10 16:19:32,515:[predict.py:399 - predict() ] SEQGEN Class Name: MBPNetSequenceGenerator INFO:2026-07-10 16:19:32,598:[generators.py:483 - _pad_samples() ] mode 'test': Data size (after padding 90 samples) - 20992 INFO:2026-07-10 16:19:32,656:[predict.py:460 - predict() ] Writing predictions to predictions/SKNO-1_RUNX1/fold_3/model_split000_predictions.h5 DEBUG:2026-07-10 16:19:32,678:[generators.py:731 - _epoch_run() ] test spawning process 0, df size (10496, 3) sum(num_batches) 164 DEBUG:2026-07-10 16:19:32,715:[generators.py:731 - _epoch_run() ] test spawning process 1, df size (10496, 3) sum(num_batches) 328 DEBUG:2026-07-10 16:19:32,769:[generators.py:757 - _epoch_run() ] test num_batches list [164, 164] DEBUG:2026-07-10 16:19:32,770:[generators.py:770 - _epoch_run() ] test starting stealer thread 0 [164] DEBUG:2026-07-10 16:19:32,771:[generators.py:770 - _epoch_run() ] test starting stealer thread 1 [164] DEBUG:2026-07-10 16:21:14,088:[generators.py:652 - _proc_target() ] test process 0 put 164 batches into mpq DEBUG:2026-07-10 16:21:14,139:[generators.py:676 - _stealer() ] test stealer thread 0 got 164 batches from mpq DEBUG:2026-07-10 16:21:15,125:[generators.py:652 - _proc_target() ] test process 1 put 164 batches into mpq DEBUG:2026-07-10 16:21:15,146:[generators.py:676 - _stealer() ] test stealer thread 1 got 164 batches from mpq DEBUG:2026-07-10 16:23:20,383:[generators.py:814 - gen() ] test waiting to join process 0 DEBUG:2026-07-10 16:23:20,384:[generators.py:819 - gen() ] test waiting to join thread 0 DEBUG:2026-07-10 16:23:20,384:[generators.py:823 - gen() ] test join complete for process 0 DEBUG:2026-07-10 16:23:20,384:[generators.py:814 - gen() ] test waiting to join process 1 DEBUG:2026-07-10 16:23:20,384:[generators.py:819 - gen() ] test waiting to join thread 1 DEBUG:2026-07-10 16:23:20,384:[generators.py:823 - gen() ] test join complete for process 1 DEBUG:2026-07-10 16:23:20,384:[generators.py:826 - gen() ] test Finished join for epoch DEBUG:2026-07-10 16:23:20,384:[generators.py:828 - gen() ] test Ready for next epoch INFO:2026-07-10 16:23:20,384:[predict.py:731 - predict() ] Writing to h5 file ... INFO:2026-07-10 16:23:33,595:[predict.py:747 - predict() ] Elapsed Time: 240.93193435668945 secs INFO:2026-07-10 16:23:33,595:[predict.py:751 - predict() ] Generating predicted profile bigWigs ... INFO:2026-07-10 16:23:33,595:[predict.py:753 - predict() ] predictions shape - (20902, 1000, 2) INFO:2026-07-10 16:23:33,601:[predict.py:775 - predict() ] bigWig HEADER - [('chr1', 248956422), ('chr10', 133797422), ('chr11', 135086622), ('chr12', 133275309), ('chr13', 114364328), ('chr14', 107043718), ('chr15', 101991189), ('chr16', 90338345), ('chr17', 83257441), ('chr18', 80373285), ('chr19', 58617616), ('chr2', 242193529), ('chr20', 64444167), ('chr21', 46709983), ('chr22', 50818468), ('chr3', 198295559), ('chr4', 190214555), ('chr5', 181538259), ('chr6', 170805979), ('chr7', 159345973), ('chr8', 145138636), ('chr9', 138394717), ('chrM', 16569), ('chrX', 156040895), ('chrY', 57227415)] INFO:2026-07-10 16:24:46,155:[predict.py:801 - predict() ] min max median INFO:2026-07-10 16:24:46,157:[predict.py:806 - predict() ] mnll 0.000 0.822 0.171 INFO:2026-07-10 16:24:46,158:[predict.py:811 - predict() ] cross_entropy 0.000 0.822 0.171 INFO:2026-07-10 16:24:46,159:[predict.py:816 - predict() ] jsd 0.000 0.794 0.475 INFO:2026-07-10 16:24:46,159:[predict.py:821 - predict() ] spearman -0.405 0.979 0.595 INFO:2026-07-10 16:24:46,160:[predict.py:826 - predict() ] pearson -0.645 0.961 0.638 INFO:2026-07-10 16:24:46,161:[predict.py:831 - predict() ] mse 0.000 42.490 0.297 INFO:2026-07-10 16:24:46,161:[predict.py:833 - predict() ] ============================================== INFO:2026-07-10 16:24:46,536:[predict.py:848 - predict() ] counts pearson: [0.60098981 0.59689544] INFO:2026-07-10 16:24:46,537:[predict.py:849 - predict() ] counts spearman: [0.61633867 0.61184754]