INFO:2026-07-10 00:32:06,377:[predict.py:399 - predict() ] SEQGEN Class Name: MBPNetSequenceGenerator INFO:2026-07-10 00:32:06,461:[generators.py:483 - _pad_samples() ] mode 'test': Data size (after padding 90 samples) - 20992 INFO:2026-07-10 00:32:06,467:[predict.py:460 - predict() ] Writing predictions to predictions/SKNO-1_RUNX1/fold_2/model_split000_predictions.h5 DEBUG:2026-07-10 00:32:06,489:[generators.py:731 - _epoch_run() ] test spawning process 0, df size (10496, 3) sum(num_batches) 164 DEBUG:2026-07-10 00:32:06,527:[generators.py:731 - _epoch_run() ] test spawning process 1, df size (10496, 3) sum(num_batches) 328 DEBUG:2026-07-10 00:32:06,556:[generators.py:757 - _epoch_run() ] test num_batches list [164, 164] DEBUG:2026-07-10 00:32:06,556:[generators.py:770 - _epoch_run() ] test starting stealer thread 0 [164] DEBUG:2026-07-10 00:32:06,566:[generators.py:770 - _epoch_run() ] test starting stealer thread 1 [164] DEBUG:2026-07-10 00:32:53,534:[generators.py:652 - _proc_target() ] test process 0 put 164 batches into mpq DEBUG:2026-07-10 00:32:53,553:[generators.py:676 - _stealer() ] test stealer thread 0 got 164 batches from mpq DEBUG:2026-07-10 00:32:55,730:[generators.py:676 - _stealer() ] test stealer thread 1 got 164 batches from mpq DEBUG:2026-07-10 00:32:55,708:[generators.py:652 - _proc_target() ] test process 1 put 164 batches into mpq DEBUG:2026-07-10 00:35:44,504:[generators.py:814 - gen() ] test waiting to join process 0 DEBUG:2026-07-10 00:35:44,504:[generators.py:819 - gen() ] test waiting to join thread 0 DEBUG:2026-07-10 00:35:44,505:[generators.py:823 - gen() ] test join complete for process 0 DEBUG:2026-07-10 00:35:44,505:[generators.py:814 - gen() ] test waiting to join process 1 DEBUG:2026-07-10 00:35:44,505:[generators.py:819 - gen() ] test waiting to join thread 1 DEBUG:2026-07-10 00:35:44,505:[generators.py:823 - gen() ] test join complete for process 1 DEBUG:2026-07-10 00:35:44,505:[generators.py:826 - gen() ] test Finished join for epoch DEBUG:2026-07-10 00:35:44,505:[generators.py:828 - gen() ] test Ready for next epoch INFO:2026-07-10 00:35:44,506:[predict.py:731 - predict() ] Writing to h5 file ... INFO:2026-07-10 00:35:58,770:[predict.py:747 - predict() ] Elapsed Time: 232.29525136947632 secs INFO:2026-07-10 00:35:58,770:[predict.py:751 - predict() ] Generating predicted profile bigWigs ... INFO:2026-07-10 00:35:58,770:[predict.py:753 - predict() ] predictions shape - (20902, 1000, 2) INFO:2026-07-10 00:35:58,780:[predict.py:775 - predict() ] bigWig HEADER - [('chr1', 248956422), ('chr10', 133797422), ('chr11', 135086622), ('chr12', 133275309), ('chr13', 114364328), ('chr14', 107043718), ('chr15', 101991189), ('chr16', 90338345), ('chr17', 83257441), ('chr18', 80373285), ('chr19', 58617616), ('chr2', 242193529), ('chr20', 64444167), ('chr21', 46709983), ('chr22', 50818468), ('chr3', 198295559), ('chr4', 190214555), ('chr5', 181538259), ('chr6', 170805979), ('chr7', 159345973), ('chr8', 145138636), ('chr9', 138394717), ('chrM', 16569), ('chrX', 156040895), ('chrY', 57227415)] INFO:2026-07-10 00:37:13,199:[predict.py:801 - predict() ] min max median INFO:2026-07-10 00:37:13,202:[predict.py:806 - predict() ] mnll 0.000 0.830 0.169 INFO:2026-07-10 00:37:13,203:[predict.py:811 - predict() ] cross_entropy 0.000 0.830 0.169 INFO:2026-07-10 00:37:13,205:[predict.py:816 - predict() ] jsd 0.000 0.805 0.473 INFO:2026-07-10 00:37:13,207:[predict.py:821 - predict() ] spearman -0.322 0.976 0.590 INFO:2026-07-10 00:37:13,209:[predict.py:826 - predict() ] pearson -0.586 0.965 0.638 INFO:2026-07-10 00:37:13,210:[predict.py:831 - predict() ] mse 0.000 45.193 0.297 INFO:2026-07-10 00:37:13,211:[predict.py:833 - predict() ] ============================================== INFO:2026-07-10 00:37:13,252:[predict.py:848 - predict() ] counts pearson: [0.61229415 0.60655325] INFO:2026-07-10 00:37:13,252:[predict.py:849 - predict() ] counts spearman: [0.62310146 0.61566632] INFO:2026-07-10 16:16:26,495:[predict.py:399 - predict() ] SEQGEN Class Name: MBPNetSequenceGenerator INFO:2026-07-10 16:16:26,542:[generators.py:483 - _pad_samples() ] mode 'test': Data size (after padding 90 samples) - 20992 INFO:2026-07-10 16:16:26,650:[predict.py:460 - predict() ] Writing predictions to predictions/SKNO-1_RUNX1/fold_2/model_split000_predictions.h5 DEBUG:2026-07-10 16:16:26,661:[generators.py:731 - _epoch_run() ] test spawning process 0, df size (10496, 3) sum(num_batches) 164 DEBUG:2026-07-10 16:16:26,687:[generators.py:731 - _epoch_run() ] test spawning process 1, df size (10496, 3) sum(num_batches) 328 DEBUG:2026-07-10 16:16:26,721:[generators.py:757 - _epoch_run() ] test num_batches list [164, 164] DEBUG:2026-07-10 16:16:26,721:[generators.py:770 - _epoch_run() ] test starting stealer thread 0 [164] DEBUG:2026-07-10 16:16:26,730:[generators.py:770 - _epoch_run() ] test starting stealer thread 1 [164] DEBUG:2026-07-10 16:17:29,910:[generators.py:676 - _stealer() ] test stealer thread 0 got 164 batches from mpq DEBUG:2026-07-10 16:17:29,903:[generators.py:652 - _proc_target() ] test process 0 put 164 batches into mpq DEBUG:2026-07-10 16:17:30,412:[generators.py:652 - _proc_target() ] test process 1 put 164 batches into mpq DEBUG:2026-07-10 16:17:30,418:[generators.py:676 - _stealer() ] test stealer thread 1 got 164 batches from mpq DEBUG:2026-07-10 16:18:51,873:[generators.py:814 - gen() ] test waiting to join process 0 DEBUG:2026-07-10 16:18:51,873:[generators.py:819 - gen() ] test waiting to join thread 0 DEBUG:2026-07-10 16:18:51,873:[generators.py:823 - gen() ] test join complete for process 0 DEBUG:2026-07-10 16:18:51,873:[generators.py:814 - gen() ] test waiting to join process 1 DEBUG:2026-07-10 16:18:51,873:[generators.py:819 - gen() ] test waiting to join thread 1 DEBUG:2026-07-10 16:18:51,873:[generators.py:823 - gen() ] test join complete for process 1 DEBUG:2026-07-10 16:18:51,873:[generators.py:826 - gen() ] test Finished join for epoch DEBUG:2026-07-10 16:18:51,873:[generators.py:828 - gen() ] test Ready for next epoch INFO:2026-07-10 16:18:51,874:[predict.py:731 - predict() ] Writing to h5 file ... INFO:2026-07-10 16:19:03,103:[predict.py:747 - predict() ] Elapsed Time: 156.45091366767883 secs INFO:2026-07-10 16:19:03,103:[predict.py:751 - predict() ] Generating predicted profile bigWigs ... INFO:2026-07-10 16:19:03,103:[predict.py:753 - predict() ] predictions shape - (20902, 1000, 2) INFO:2026-07-10 16:19:03,107:[predict.py:775 - predict() ] bigWig HEADER - [('chr1', 248956422), ('chr10', 133797422), ('chr11', 135086622), ('chr12', 133275309), ('chr13', 114364328), ('chr14', 107043718), ('chr15', 101991189), ('chr16', 90338345), ('chr17', 83257441), ('chr18', 80373285), ('chr19', 58617616), ('chr2', 242193529), ('chr20', 64444167), ('chr21', 46709983), ('chr22', 50818468), ('chr3', 198295559), ('chr4', 190214555), ('chr5', 181538259), ('chr6', 170805979), ('chr7', 159345973), ('chr8', 145138636), ('chr9', 138394717), ('chrM', 16569), ('chrX', 156040895), ('chrY', 57227415)] INFO:2026-07-10 16:19:54,365:[predict.py:801 - predict() ] min max median INFO:2026-07-10 16:19:54,366:[predict.py:806 - predict() ] mnll 0.000 0.829 0.174 INFO:2026-07-10 16:19:54,367:[predict.py:811 - predict() ] cross_entropy 0.000 0.829 0.174 INFO:2026-07-10 16:19:54,368:[predict.py:816 - predict() ] jsd 0.000 0.817 0.481 INFO:2026-07-10 16:19:54,368:[predict.py:821 - predict() ] spearman -0.364 0.981 0.601 INFO:2026-07-10 16:19:54,369:[predict.py:826 - predict() ] pearson -0.647 0.952 0.645 INFO:2026-07-10 16:19:54,370:[predict.py:831 - predict() ] mse 0.000 44.842 0.304 INFO:2026-07-10 16:19:54,370:[predict.py:833 - predict() ] ============================================== INFO:2026-07-10 16:19:55,132:[predict.py:848 - predict() ] counts pearson: [0.60098883 0.59562618] INFO:2026-07-10 16:19:55,132:[predict.py:849 - predict() ] counts spearman: [0.61865522 0.61403192]