INFO:2026-07-09 23:50:45,323:[predict.py:399 - predict() ] SEQGEN Class Name: MBPNetSequenceGenerator INFO:2026-07-09 23:50:45,367:[generators.py:483 - _pad_samples() ] mode 'test': Data size (after padding 90 samples) - 20992 INFO:2026-07-09 23:50:45,371:[predict.py:460 - predict() ] Writing predictions to predictions/SKNO-1_RUNX1/fold_1/model_split000_predictions.h5 DEBUG:2026-07-09 23:50:45,427:[generators.py:731 - _epoch_run() ] test spawning process 0, df size (10496, 3) sum(num_batches) 164 DEBUG:2026-07-09 23:50:45,472:[generators.py:731 - _epoch_run() ] test spawning process 1, df size (10496, 3) sum(num_batches) 328 DEBUG:2026-07-09 23:50:45,507:[generators.py:757 - _epoch_run() ] test num_batches list [164, 164] DEBUG:2026-07-09 23:50:45,507:[generators.py:770 - _epoch_run() ] test starting stealer thread 0 [164] DEBUG:2026-07-09 23:50:45,508:[generators.py:770 - _epoch_run() ] test starting stealer thread 1 [164] DEBUG:2026-07-09 23:51:07,234:[generators.py:652 - _proc_target() ] test process 0 put 164 batches into mpq DEBUG:2026-07-09 23:51:07,246:[generators.py:676 - _stealer() ] test stealer thread 0 got 164 batches from mpq DEBUG:2026-07-09 23:51:10,053:[generators.py:676 - _stealer() ] test stealer thread 1 got 164 batches from mpq DEBUG:2026-07-09 23:51:10,041:[generators.py:652 - _proc_target() ] test process 1 put 164 batches into mpq DEBUG:2026-07-09 23:56:20,943:[generators.py:814 - gen() ] test waiting to join process 0 DEBUG:2026-07-09 23:56:20,944:[generators.py:819 - gen() ] test waiting to join thread 0 DEBUG:2026-07-09 23:56:20,944:[generators.py:823 - gen() ] test join complete for process 0 DEBUG:2026-07-09 23:56:20,945:[generators.py:814 - gen() ] test waiting to join process 1 DEBUG:2026-07-09 23:56:20,945:[generators.py:819 - gen() ] test waiting to join thread 1 DEBUG:2026-07-09 23:56:20,945:[generators.py:823 - gen() ] test join complete for process 1 DEBUG:2026-07-09 23:56:20,945:[generators.py:826 - gen() ] test Finished join for epoch DEBUG:2026-07-09 23:56:20,945:[generators.py:828 - gen() ] test Ready for next epoch INFO:2026-07-09 23:56:20,945:[predict.py:731 - predict() ] Writing to h5 file ... INFO:2026-07-09 23:56:30,452:[predict.py:747 - predict() ] Elapsed Time: 345.0794053077698 secs INFO:2026-07-09 23:56:30,452:[predict.py:751 - predict() ] Generating predicted profile bigWigs ... INFO:2026-07-09 23:56:30,452:[predict.py:753 - predict() ] predictions shape - (20902, 1000, 2) INFO:2026-07-09 23:56:30,455:[predict.py:775 - predict() ] bigWig HEADER - [('chr1', 248956422), ('chr10', 133797422), ('chr11', 135086622), ('chr12', 133275309), ('chr13', 114364328), ('chr14', 107043718), ('chr15', 101991189), ('chr16', 90338345), ('chr17', 83257441), ('chr18', 80373285), ('chr19', 58617616), ('chr2', 242193529), ('chr20', 64444167), ('chr21', 46709983), ('chr22', 50818468), ('chr3', 198295559), ('chr4', 190214555), ('chr5', 181538259), ('chr6', 170805979), ('chr7', 159345973), ('chr8', 145138636), ('chr9', 138394717), ('chrM', 16569), ('chrX', 156040895), ('chrY', 57227415)] INFO:2026-07-09 23:57:18,245:[predict.py:801 - predict() ] min max median INFO:2026-07-09 23:57:18,246:[predict.py:806 - predict() ] mnll 0.000 0.824 0.172 INFO:2026-07-09 23:57:18,247:[predict.py:811 - predict() ] cross_entropy 0.000 0.824 0.172 INFO:2026-07-09 23:57:18,247:[predict.py:816 - predict() ] jsd 0.000 0.815 0.479 INFO:2026-07-09 23:57:18,248:[predict.py:821 - predict() ] spearman -0.341 0.978 0.597 INFO:2026-07-09 23:57:18,249:[predict.py:826 - predict() ] pearson -0.643 0.953 0.642 INFO:2026-07-09 23:57:18,249:[predict.py:831 - predict() ] mse 0.000 40.737 0.301 INFO:2026-07-09 23:57:18,249:[predict.py:833 - predict() ] ============================================== INFO:2026-07-09 23:57:18,317:[predict.py:848 - predict() ] counts pearson: [0.62883136 0.62576575] INFO:2026-07-09 23:57:18,317:[predict.py:849 - predict() ] counts spearman: [0.64524246 0.64059694] INFO:2026-07-10 16:16:05,117:[predict.py:399 - predict() ] SEQGEN Class Name: MBPNetSequenceGenerator INFO:2026-07-10 16:16:05,604:[generators.py:483 - _pad_samples() ] mode 'test': Data size (after padding 90 samples) - 20992 INFO:2026-07-10 16:16:05,669:[predict.py:460 - predict() ] Writing predictions to predictions/SKNO-1_RUNX1/fold_1/model_split000_predictions.h5 DEBUG:2026-07-10 16:16:05,683:[generators.py:731 - _epoch_run() ] test spawning process 0, df size (10496, 3) sum(num_batches) 164 DEBUG:2026-07-10 16:16:05,704:[generators.py:731 - _epoch_run() ] test spawning process 1, df size (10496, 3) sum(num_batches) 328 DEBUG:2026-07-10 16:16:05,734:[generators.py:757 - _epoch_run() ] test num_batches list [164, 164] DEBUG:2026-07-10 16:16:05,735:[generators.py:770 - _epoch_run() ] test starting stealer thread 0 [164] DEBUG:2026-07-10 16:16:05,735:[generators.py:770 - _epoch_run() ] test starting stealer thread 1 [164] DEBUG:2026-07-10 16:17:23,789:[generators.py:676 - _stealer() ] test stealer thread 0 got 164 batches from mpq DEBUG:2026-07-10 16:17:23,778:[generators.py:652 - _proc_target() ] test process 0 put 164 batches into mpq DEBUG:2026-07-10 16:17:24,663:[generators.py:652 - _proc_target() ] test process 1 put 164 batches into mpq DEBUG:2026-07-10 16:17:24,673:[generators.py:676 - _stealer() ] test stealer thread 1 got 164 batches from mpq DEBUG:2026-07-10 16:19:01,777:[generators.py:814 - gen() ] test waiting to join process 0 DEBUG:2026-07-10 16:19:01,778:[generators.py:819 - gen() ] test waiting to join thread 0 DEBUG:2026-07-10 16:19:01,778:[generators.py:823 - gen() ] test join complete for process 0 DEBUG:2026-07-10 16:19:01,778:[generators.py:814 - gen() ] test waiting to join process 1 DEBUG:2026-07-10 16:19:01,778:[generators.py:819 - gen() ] test waiting to join thread 1 DEBUG:2026-07-10 16:19:01,778:[generators.py:823 - gen() ] test join complete for process 1 DEBUG:2026-07-10 16:19:01,778:[generators.py:826 - gen() ] test Finished join for epoch DEBUG:2026-07-10 16:19:01,778:[generators.py:828 - gen() ] test Ready for next epoch INFO:2026-07-10 16:19:01,778:[predict.py:731 - predict() ] Writing to h5 file ... INFO:2026-07-10 16:19:13,292:[predict.py:747 - predict() ] Elapsed Time: 187.61837649345398 secs INFO:2026-07-10 16:19:13,292:[predict.py:751 - predict() ] Generating predicted profile bigWigs ... INFO:2026-07-10 16:19:13,292:[predict.py:753 - predict() ] predictions shape - (20902, 1000, 2) INFO:2026-07-10 16:19:13,297:[predict.py:775 - predict() ] bigWig HEADER - [('chr1', 248956422), ('chr10', 133797422), ('chr11', 135086622), ('chr12', 133275309), ('chr13', 114364328), ('chr14', 107043718), ('chr15', 101991189), ('chr16', 90338345), ('chr17', 83257441), ('chr18', 80373285), ('chr19', 58617616), ('chr2', 242193529), ('chr20', 64444167), ('chr21', 46709983), ('chr22', 50818468), ('chr3', 198295559), ('chr4', 190214555), ('chr5', 181538259), ('chr6', 170805979), ('chr7', 159345973), ('chr8', 145138636), ('chr9', 138394717), ('chrM', 16569), ('chrX', 156040895), ('chrY', 57227415)] INFO:2026-07-10 16:20:14,412:[predict.py:801 - predict() ] min max median INFO:2026-07-10 16:20:14,414:[predict.py:806 - predict() ] mnll 0.000 0.823 0.173 INFO:2026-07-10 16:20:14,414:[predict.py:811 - predict() ] cross_entropy 0.000 0.823 0.174 INFO:2026-07-10 16:20:14,415:[predict.py:816 - predict() ] jsd 0.000 0.821 0.479 INFO:2026-07-10 16:20:14,416:[predict.py:821 - predict() ] spearman -0.334 0.976 0.598 INFO:2026-07-10 16:20:14,417:[predict.py:826 - predict() ] pearson -0.846 0.959 0.642 INFO:2026-07-10 16:20:14,419:[predict.py:831 - predict() ] mse 0.000 43.599 0.301 INFO:2026-07-10 16:20:14,419:[predict.py:833 - predict() ] ============================================== INFO:2026-07-10 16:20:14,495:[predict.py:848 - predict() ] counts pearson: [0.6226406 0.61832291] INFO:2026-07-10 16:20:14,495:[predict.py:849 - predict() ] counts spearman: [0.63710418 0.63206545]