INFO:2026-07-09 23:55:25,127:[predict.py:399 - predict() ] SEQGEN Class Name: MBPNetSequenceGenerator INFO:2026-07-09 23:55:25,172:[generators.py:483 - _pad_samples() ] mode 'test': Data size (after padding 90 samples) - 20992 INFO:2026-07-09 23:55:25,176:[predict.py:460 - predict() ] Writing predictions to predictions/SKNO-1_RUNX1/fold_0/model_split000_predictions.h5 DEBUG:2026-07-09 23:55:25,937:[generators.py:731 - _epoch_run() ] test spawning process 0, df size (10496, 3) sum(num_batches) 164 DEBUG:2026-07-09 23:55:26,198:[generators.py:731 - _epoch_run() ] test spawning process 1, df size (10496, 3) sum(num_batches) 328 DEBUG:2026-07-09 23:55:26,221:[generators.py:757 - _epoch_run() ] test num_batches list [164, 164] DEBUG:2026-07-09 23:55:26,222:[generators.py:770 - _epoch_run() ] test starting stealer thread 0 [164] DEBUG:2026-07-09 23:55:26,222:[generators.py:770 - _epoch_run() ] test starting stealer thread 1 [164] DEBUG:2026-07-09 23:55:52,683:[generators.py:652 - _proc_target() ] test process 0 put 164 batches into mpq DEBUG:2026-07-09 23:55:52,722:[generators.py:676 - _stealer() ] test stealer thread 0 got 164 batches from mpq DEBUG:2026-07-09 23:55:53,290:[generators.py:652 - _proc_target() ] test process 1 put 164 batches into mpq DEBUG:2026-07-09 23:55:53,357:[generators.py:676 - _stealer() ] test stealer thread 1 got 164 batches from mpq DEBUG:2026-07-09 23:57:58,444:[generators.py:814 - gen() ] test waiting to join process 0 DEBUG:2026-07-09 23:57:58,444:[generators.py:819 - gen() ] test waiting to join thread 0 DEBUG:2026-07-09 23:57:58,444:[generators.py:823 - gen() ] test join complete for process 0 DEBUG:2026-07-09 23:57:58,444:[generators.py:814 - gen() ] test waiting to join process 1 DEBUG:2026-07-09 23:57:58,444:[generators.py:819 - gen() ] test waiting to join thread 1 DEBUG:2026-07-09 23:57:58,444:[generators.py:823 - gen() ] test join complete for process 1 DEBUG:2026-07-09 23:57:58,444:[generators.py:826 - gen() ] test Finished join for epoch DEBUG:2026-07-09 23:57:58,444:[generators.py:828 - gen() ] test Ready for next epoch INFO:2026-07-09 23:57:58,444:[predict.py:731 - predict() ] Writing to h5 file ... INFO:2026-07-09 23:58:09,420:[predict.py:747 - predict() ] Elapsed Time: 164.24167847633362 secs INFO:2026-07-09 23:58:09,420:[predict.py:751 - predict() ] Generating predicted profile bigWigs ... INFO:2026-07-09 23:58:09,420:[predict.py:753 - predict() ] predictions shape - (20902, 1000, 2) INFO:2026-07-09 23:58:09,423:[predict.py:775 - predict() ] bigWig HEADER - [('chr1', 248956422), ('chr10', 133797422), ('chr11', 135086622), ('chr12', 133275309), ('chr13', 114364328), ('chr14', 107043718), ('chr15', 101991189), ('chr16', 90338345), ('chr17', 83257441), ('chr18', 80373285), ('chr19', 58617616), ('chr2', 242193529), ('chr20', 64444167), ('chr21', 46709983), ('chr22', 50818468), ('chr3', 198295559), ('chr4', 190214555), ('chr5', 181538259), ('chr6', 170805979), ('chr7', 159345973), ('chr8', 145138636), ('chr9', 138394717), ('chrM', 16569), ('chrX', 156040895), ('chrY', 57227415)] INFO:2026-07-09 23:59:01,323:[predict.py:801 - predict() ] min max median INFO:2026-07-09 23:59:01,324:[predict.py:806 - predict() ] mnll 0.000 0.830 0.166 INFO:2026-07-09 23:59:01,324:[predict.py:811 - predict() ] cross_entropy 0.000 0.830 0.166 INFO:2026-07-09 23:59:01,325:[predict.py:816 - predict() ] jsd 0.000 0.806 0.472 INFO:2026-07-09 23:59:01,326:[predict.py:821 - predict() ] spearman -0.439 0.981 0.585 INFO:2026-07-09 23:59:01,326:[predict.py:826 - predict() ] pearson -0.710 0.947 0.632 INFO:2026-07-09 23:59:01,327:[predict.py:831 - predict() ] mse 0.000 44.221 0.301 INFO:2026-07-09 23:59:01,327:[predict.py:833 - predict() ] ============================================== INFO:2026-07-09 23:59:01,345:[predict.py:848 - predict() ] counts pearson: [0.59730648 0.59259007] INFO:2026-07-09 23:59:01,345:[predict.py:849 - predict() ] counts spearman: [0.61004162 0.60299337] INFO:2026-07-10 16:08:21,580:[predict.py:399 - predict() ] SEQGEN Class Name: MBPNetSequenceGenerator INFO:2026-07-10 16:08:21,671:[generators.py:483 - _pad_samples() ] mode 'test': Data size (after padding 90 samples) - 20992 INFO:2026-07-10 16:08:21,982:[predict.py:460 - predict() ] Writing predictions to predictions/SKNO-1_RUNX1/fold_0/model_split000_predictions.h5 DEBUG:2026-07-10 16:08:21,993:[generators.py:731 - _epoch_run() ] test spawning process 0, df size (10496, 3) sum(num_batches) 164 DEBUG:2026-07-10 16:08:22,026:[generators.py:731 - _epoch_run() ] test spawning process 1, df size (10496, 3) sum(num_batches) 328 DEBUG:2026-07-10 16:08:22,070:[generators.py:757 - _epoch_run() ] test num_batches list [164, 164] DEBUG:2026-07-10 16:08:22,070:[generators.py:770 - _epoch_run() ] test starting stealer thread 0 [164] DEBUG:2026-07-10 16:08:22,074:[generators.py:770 - _epoch_run() ] test starting stealer thread 1 [164] DEBUG:2026-07-10 16:09:27,624:[generators.py:652 - _proc_target() ] test process 0 put 164 batches into mpq DEBUG:2026-07-10 16:09:27,663:[generators.py:676 - _stealer() ] test stealer thread 0 got 164 batches from mpq DEBUG:2026-07-10 16:09:28,296:[generators.py:676 - _stealer() ] test stealer thread 1 got 164 batches from mpq DEBUG:2026-07-10 16:09:28,283:[generators.py:652 - _proc_target() ] test process 1 put 164 batches into mpq DEBUG:2026-07-10 16:11:15,727:[generators.py:814 - gen() ] test waiting to join process 0 DEBUG:2026-07-10 16:11:15,728:[generators.py:819 - gen() ] test waiting to join thread 0 DEBUG:2026-07-10 16:11:15,728:[generators.py:823 - gen() ] test join complete for process 0 DEBUG:2026-07-10 16:11:15,728:[generators.py:814 - gen() ] test waiting to join process 1 DEBUG:2026-07-10 16:11:15,728:[generators.py:819 - gen() ] test waiting to join thread 1 DEBUG:2026-07-10 16:11:15,728:[generators.py:823 - gen() ] test join complete for process 1 DEBUG:2026-07-10 16:11:15,728:[generators.py:826 - gen() ] test Finished join for epoch DEBUG:2026-07-10 16:11:15,728:[generators.py:828 - gen() ] test Ready for next epoch INFO:2026-07-10 16:11:15,728:[predict.py:731 - predict() ] Writing to h5 file ... INFO:2026-07-10 16:11:25,959:[predict.py:747 - predict() ] Elapsed Time: 183.97504925727844 secs INFO:2026-07-10 16:11:25,959:[predict.py:751 - predict() ] Generating predicted profile bigWigs ... INFO:2026-07-10 16:11:25,959:[predict.py:753 - predict() ] predictions shape - (20902, 1000, 2) INFO:2026-07-10 16:11:25,963:[predict.py:775 - predict() ] bigWig HEADER - [('chr1', 248956422), ('chr10', 133797422), ('chr11', 135086622), ('chr12', 133275309), ('chr13', 114364328), ('chr14', 107043718), ('chr15', 101991189), ('chr16', 90338345), ('chr17', 83257441), ('chr18', 80373285), ('chr19', 58617616), ('chr2', 242193529), ('chr20', 64444167), ('chr21', 46709983), ('chr22', 50818468), ('chr3', 198295559), ('chr4', 190214555), ('chr5', 181538259), ('chr6', 170805979), ('chr7', 159345973), ('chr8', 145138636), ('chr9', 138394717), ('chrM', 16569), ('chrX', 156040895), ('chrY', 57227415)] INFO:2026-07-10 16:12:17,643:[predict.py:801 - predict() ] min max median INFO:2026-07-10 16:12:17,644:[predict.py:806 - predict() ] mnll 0.000 0.822 0.174 INFO:2026-07-10 16:12:17,645:[predict.py:811 - predict() ] cross_entropy 0.000 0.822 0.174 INFO:2026-07-10 16:12:17,646:[predict.py:816 - predict() ] jsd 0.000 0.802 0.480 INFO:2026-07-10 16:12:17,647:[predict.py:821 - predict() ] spearman -0.367 0.976 0.601 INFO:2026-07-10 16:12:17,647:[predict.py:826 - predict() ] pearson -0.647 0.958 0.643 INFO:2026-07-10 16:12:17,648:[predict.py:831 - predict() ] mse 0.000 37.048 0.298 INFO:2026-07-10 16:12:17,648:[predict.py:833 - predict() ] ============================================== INFO:2026-07-10 16:12:17,729:[predict.py:848 - predict() ] counts pearson: [0.61836538 0.61502262] INFO:2026-07-10 16:12:17,729:[predict.py:849 - predict() ] counts spearman: [0.63928826 0.63515637]