INFO:2026-07-09 23:56:49,406:[predict.py:399 - predict() ] SEQGEN Class Name: MBPNetSequenceGenerator INFO:2026-07-09 23:56:49,435:[generators.py:483 - _pad_samples() ] mode 'test': Data size (after padding 29 samples) - 11648 INFO:2026-07-09 23:56:49,438:[predict.py:460 - predict() ] Writing predictions to predictions/SKNO-1_AE/fold_4/model_split000_predictions.h5 DEBUG:2026-07-09 23:56:49,463:[generators.py:731 - _epoch_run() ] test spawning process 0, df size (5824, 3) sum(num_batches) 91 DEBUG:2026-07-09 23:56:49,493:[generators.py:731 - _epoch_run() ] test spawning process 1, df size (5824, 3) sum(num_batches) 182 DEBUG:2026-07-09 23:56:49,516:[generators.py:757 - _epoch_run() ] test num_batches list [91, 91] DEBUG:2026-07-09 23:56:49,516:[generators.py:770 - _epoch_run() ] test starting stealer thread 0 [91] DEBUG:2026-07-09 23:56:49,517:[generators.py:770 - _epoch_run() ] test starting stealer thread 1 [91] DEBUG:2026-07-09 23:57:05,928:[generators.py:652 - _proc_target() ] test process 0 put 91 batches into mpq DEBUG:2026-07-09 23:57:06,044:[generators.py:676 - _stealer() ] test stealer thread 0 got 91 batches from mpq DEBUG:2026-07-09 23:57:06,678:[generators.py:652 - _proc_target() ] test process 1 put 91 batches into mpq DEBUG:2026-07-09 23:57:06,772:[generators.py:676 - _stealer() ] test stealer thread 1 got 91 batches from mpq DEBUG:2026-07-09 23:58:08,077:[generators.py:814 - gen() ] test waiting to join process 0 DEBUG:2026-07-09 23:58:08,077:[generators.py:819 - gen() ] test waiting to join thread 0 DEBUG:2026-07-09 23:58:08,077:[generators.py:823 - gen() ] test join complete for process 0 DEBUG:2026-07-09 23:58:08,077:[generators.py:814 - gen() ] test waiting to join process 1 DEBUG:2026-07-09 23:58:08,077:[generators.py:819 - gen() ] test waiting to join thread 1 DEBUG:2026-07-09 23:58:08,077:[generators.py:823 - gen() ] test join complete for process 1 DEBUG:2026-07-09 23:58:08,077:[generators.py:826 - gen() ] test Finished join for epoch DEBUG:2026-07-09 23:58:08,077:[generators.py:828 - gen() ] test Ready for next epoch INFO:2026-07-09 23:58:08,078:[predict.py:731 - predict() ] Writing to h5 file ... INFO:2026-07-09 23:58:13,654:[predict.py:747 - predict() ] Elapsed Time: 84.21432566642761 secs INFO:2026-07-09 23:58:13,654:[predict.py:751 - predict() ] Generating predicted profile bigWigs ... INFO:2026-07-09 23:58:13,654:[predict.py:753 - predict() ] predictions shape - (11619, 1000, 2) INFO:2026-07-09 23:58:13,657:[predict.py:775 - predict() ] bigWig HEADER - [('chr1', 248956422), ('chr10', 133797422), ('chr11', 135086622), ('chr12', 133275309), ('chr13', 114364328), ('chr14', 107043718), ('chr15', 101991189), ('chr16', 90338345), ('chr17', 83257441), ('chr18', 80373285), ('chr19', 58617616), ('chr2', 242193529), ('chr20', 64444167), ('chr21', 46709983), ('chr22', 50818468), ('chr3', 198295559), ('chr4', 190214555), ('chr5', 181538259), ('chr6', 170805979), ('chr7', 159345973), ('chr8', 145138636), ('chr9', 138394717), ('chrM', 16569), ('chrX', 156040895), ('chrY', 57227415)] INFO:2026-07-09 23:58:43,204:[predict.py:801 - predict() ] min max median INFO:2026-07-09 23:58:43,205:[predict.py:806 - predict() ] mnll 0.000 0.886 0.315 INFO:2026-07-09 23:58:43,205:[predict.py:811 - predict() ] cross_entropy 0.000 0.886 0.316 INFO:2026-07-09 23:58:43,205:[predict.py:816 - predict() ] jsd 0.022 0.871 0.597 INFO:2026-07-09 23:58:43,206:[predict.py:821 - predict() ] spearman -0.334 0.988 0.837 INFO:2026-07-09 23:58:43,206:[predict.py:826 - predict() ] pearson -0.628 0.978 0.733 INFO:2026-07-09 23:58:43,206:[predict.py:831 - predict() ] mse 0.003 5.418 0.057 INFO:2026-07-09 23:58:43,206:[predict.py:833 - predict() ] ============================================== INFO:2026-07-09 23:58:43,254:[predict.py:848 - predict() ] counts pearson: [0.55312578 0.55535131] INFO:2026-07-09 23:58:43,255:[predict.py:849 - predict() ] counts spearman: [0.55251479 0.55420844] INFO:2026-07-10 00:44:34,250:[predict.py:399 - predict() ] SEQGEN Class Name: MBPNetSequenceGenerator INFO:2026-07-10 00:44:34,312:[generators.py:483 - _pad_samples() ] mode 'test': Data size (after padding 29 samples) - 11648 INFO:2026-07-10 00:44:34,320:[predict.py:460 - predict() ] Writing predictions to predictions/SKNO-1_AE/fold_4/model_split000_predictions.h5 DEBUG:2026-07-10 00:44:34,340:[generators.py:731 - _epoch_run() ] test spawning process 0, df size (5824, 3) sum(num_batches) 91 DEBUG:2026-07-10 00:44:34,367:[generators.py:731 - _epoch_run() ] test spawning process 1, df size (5824, 3) sum(num_batches) 182 DEBUG:2026-07-10 00:44:34,388:[generators.py:757 - _epoch_run() ] test num_batches list [91, 91] DEBUG:2026-07-10 00:44:34,389:[generators.py:770 - _epoch_run() ] test starting stealer thread 0 [91] DEBUG:2026-07-10 00:44:34,389:[generators.py:770 - _epoch_run() ] test starting stealer thread 1 [91] DEBUG:2026-07-10 00:44:58,376:[generators.py:652 - _proc_target() ] test process 0 put 91 batches into mpq DEBUG:2026-07-10 00:44:58,419:[generators.py:676 - _stealer() ] test stealer thread 0 got 91 batches from mpq DEBUG:2026-07-10 00:45:00,383:[generators.py:652 - _proc_target() ] test process 1 put 91 batches into mpq DEBUG:2026-07-10 00:45:00,402:[generators.py:676 - _stealer() ] test stealer thread 1 got 91 batches from mpq DEBUG:2026-07-10 00:46:14,088:[generators.py:814 - gen() ] test waiting to join process 0 DEBUG:2026-07-10 00:46:14,089:[generators.py:819 - gen() ] test waiting to join thread 0 DEBUG:2026-07-10 00:46:14,089:[generators.py:823 - gen() ] test join complete for process 0 DEBUG:2026-07-10 00:46:14,089:[generators.py:814 - gen() ] test waiting to join process 1 DEBUG:2026-07-10 00:46:14,089:[generators.py:819 - gen() ] test waiting to join thread 1 DEBUG:2026-07-10 00:46:14,089:[generators.py:823 - gen() ] test join complete for process 1 DEBUG:2026-07-10 00:46:14,089:[generators.py:826 - gen() ] test Finished join for epoch DEBUG:2026-07-10 00:46:14,089:[generators.py:828 - gen() ] test Ready for next epoch INFO:2026-07-10 00:46:14,089:[predict.py:731 - predict() ] Writing to h5 file ... INFO:2026-07-10 00:46:21,317:[predict.py:747 - predict() ] Elapsed Time: 106.99435234069824 secs INFO:2026-07-10 00:46:21,318:[predict.py:751 - predict() ] Generating predicted profile bigWigs ... INFO:2026-07-10 00:46:21,318:[predict.py:753 - predict() ] predictions shape - (11619, 1000, 2) INFO:2026-07-10 00:46:21,322:[predict.py:775 - predict() ] bigWig HEADER - [('chr1', 248956422), ('chr10', 133797422), ('chr11', 135086622), ('chr12', 133275309), ('chr13', 114364328), ('chr14', 107043718), ('chr15', 101991189), ('chr16', 90338345), ('chr17', 83257441), ('chr18', 80373285), ('chr19', 58617616), ('chr2', 242193529), ('chr20', 64444167), ('chr21', 46709983), ('chr22', 50818468), ('chr3', 198295559), ('chr4', 190214555), ('chr5', 181538259), ('chr6', 170805979), ('chr7', 159345973), ('chr8', 145138636), ('chr9', 138394717), ('chrM', 16569), ('chrX', 156040895), ('chrY', 57227415)] INFO:2026-07-10 00:47:00,705:[predict.py:801 - predict() ] min max median INFO:2026-07-10 00:47:00,706:[predict.py:806 - predict() ] mnll 0.000 0.896 0.316 INFO:2026-07-10 00:47:00,707:[predict.py:811 - predict() ] cross_entropy 0.000 0.896 0.316 INFO:2026-07-10 00:47:00,708:[predict.py:816 - predict() ] jsd 0.014 0.876 0.599 INFO:2026-07-10 00:47:00,709:[predict.py:821 - predict() ] spearman -0.348 0.991 0.837 INFO:2026-07-10 00:47:00,710:[predict.py:826 - predict() ] pearson -0.353 0.981 0.733 INFO:2026-07-10 00:47:00,711:[predict.py:831 - predict() ] mse 0.003 5.686 0.057 INFO:2026-07-10 00:47:00,711:[predict.py:833 - predict() ] ============================================== INFO:2026-07-10 00:47:01,079:[predict.py:848 - predict() ] counts pearson: [0.55777637 0.56001054] INFO:2026-07-10 00:47:01,080:[predict.py:849 - predict() ] counts spearman: [0.55365496 0.55568343] INFO:2026-07-10 15:59:53,497:[predict.py:399 - predict() ] SEQGEN Class Name: MBPNetSequenceGenerator INFO:2026-07-10 15:59:55,881:[generators.py:483 - _pad_samples() ] mode 'test': Data size (after padding 31 samples) - 11648 INFO:2026-07-10 15:59:57,141:[predict.py:460 - predict() ] Writing predictions to predictions/SKNO-1_AE/fold_4/model_split000_predictions.h5 DEBUG:2026-07-10 15:59:57,167:[generators.py:731 - _epoch_run() ] test spawning process 0, df size (5824, 3) sum(num_batches) 91 DEBUG:2026-07-10 15:59:57,215:[generators.py:731 - _epoch_run() ] test spawning process 1, df size (5824, 3) sum(num_batches) 182 DEBUG:2026-07-10 15:59:57,250:[generators.py:757 - _epoch_run() ] test num_batches list [91, 91] DEBUG:2026-07-10 15:59:57,251:[generators.py:770 - _epoch_run() ] test starting stealer thread 0 [91] DEBUG:2026-07-10 15:59:57,252:[generators.py:770 - _epoch_run() ] test starting stealer thread 1 [91] DEBUG:2026-07-10 16:00:24,597:[generators.py:652 - _proc_target() ] test process 0 put 91 batches into mpq DEBUG:2026-07-10 16:00:24,696:[generators.py:676 - _stealer() ] test stealer thread 0 got 91 batches from mpq DEBUG:2026-07-10 16:00:26,183:[generators.py:652 - _proc_target() ] test process 1 put 91 batches into mpq DEBUG:2026-07-10 16:00:26,217:[generators.py:676 - _stealer() ] test stealer thread 1 got 91 batches from mpq DEBUG:2026-07-10 16:01:56,493:[generators.py:814 - gen() ] test waiting to join process 0 DEBUG:2026-07-10 16:01:56,493:[generators.py:819 - gen() ] test waiting to join thread 0 DEBUG:2026-07-10 16:01:56,493:[generators.py:823 - gen() ] test join complete for process 0 DEBUG:2026-07-10 16:01:56,493:[generators.py:814 - gen() ] test waiting to join process 1 DEBUG:2026-07-10 16:01:56,493:[generators.py:819 - gen() ] test waiting to join thread 1 DEBUG:2026-07-10 16:01:56,493:[generators.py:823 - gen() ] test join complete for process 1 DEBUG:2026-07-10 16:01:56,494:[generators.py:826 - gen() ] test Finished join for epoch DEBUG:2026-07-10 16:01:56,494:[generators.py:828 - gen() ] test Ready for next epoch INFO:2026-07-10 16:01:56,494:[predict.py:731 - predict() ] Writing to h5 file ... INFO:2026-07-10 16:02:03,667:[predict.py:747 - predict() ] Elapsed Time: 126.5188376903534 secs INFO:2026-07-10 16:02:03,667:[predict.py:751 - predict() ] Generating predicted profile bigWigs ... INFO:2026-07-10 16:02:03,667:[predict.py:753 - predict() ] predictions shape - (11617, 1000, 2) INFO:2026-07-10 16:02:03,676:[predict.py:775 - predict() ] bigWig HEADER - [('chr1', 248956422), ('chr10', 133797422), ('chr11', 135086622), ('chr12', 133275309), ('chr13', 114364328), ('chr14', 107043718), ('chr15', 101991189), ('chr16', 90338345), ('chr17', 83257441), ('chr18', 80373285), ('chr19', 58617616), ('chr2', 242193529), ('chr20', 64444167), ('chr21', 46709983), ('chr22', 50818468), ('chr3', 198295559), ('chr4', 190214555), ('chr5', 181538259), ('chr6', 170805979), ('chr7', 159345973), ('chr8', 145138636), ('chr9', 138394717), ('chrM', 16569), ('chrX', 156040895), ('chrY', 57227415)] INFO:2026-07-10 16:02:40,079:[predict.py:801 - predict() ] min max median INFO:2026-07-10 16:02:40,080:[predict.py:806 - predict() ] mnll 0.000 0.893 0.315 INFO:2026-07-10 16:02:40,081:[predict.py:811 - predict() ] cross_entropy 0.000 0.893 0.315 INFO:2026-07-10 16:02:40,081:[predict.py:816 - predict() ] jsd 0.019 0.870 0.599 INFO:2026-07-10 16:02:40,082:[predict.py:821 - predict() ] spearman -0.404 0.990 0.836 INFO:2026-07-10 16:02:40,082:[predict.py:826 - predict() ] pearson -0.569 0.982 0.732 INFO:2026-07-10 16:02:40,083:[predict.py:831 - predict() ] mse 0.003 4.728 0.056 INFO:2026-07-10 16:02:40,083:[predict.py:833 - predict() ] ============================================== INFO:2026-07-10 16:02:40,297:[predict.py:848 - predict() ] counts pearson: [0.57025482 0.57112554] INFO:2026-07-10 16:02:40,298:[predict.py:849 - predict() ] counts spearman: [0.5689198 0.57024587]