INFO:2026-07-09 23:22:42,571:[predict.py:399 - predict() ] SEQGEN Class Name: MBPNetSequenceGenerator INFO:2026-07-09 23:22:42,606:[generators.py:483 - _pad_samples() ] mode 'test': Data size (after padding 29 samples) - 11648 INFO:2026-07-09 23:22:42,610:[predict.py:460 - predict() ] Writing predictions to predictions/SKNO-1_AE/fold_3/model_split000_predictions.h5 DEBUG:2026-07-09 23:22:42,636:[generators.py:731 - _epoch_run() ] test spawning process 0, df size (5824, 3) sum(num_batches) 91 DEBUG:2026-07-09 23:22:42,661:[generators.py:731 - _epoch_run() ] test spawning process 1, df size (5824, 3) sum(num_batches) 182 DEBUG:2026-07-09 23:22:42,675:[generators.py:757 - _epoch_run() ] test num_batches list [91, 91] DEBUG:2026-07-09 23:22:42,675:[generators.py:770 - _epoch_run() ] test starting stealer thread 0 [91] DEBUG:2026-07-09 23:22:42,676:[generators.py:770 - _epoch_run() ] test starting stealer thread 1 [91] DEBUG:2026-07-09 23:23:02,866:[generators.py:676 - _stealer() ] test stealer thread 0 got 91 batches from mpq DEBUG:2026-07-09 23:23:02,855:[generators.py:652 - _proc_target() ] test process 0 put 91 batches into mpq DEBUG:2026-07-09 23:23:03,329:[generators.py:652 - _proc_target() ] test process 1 put 91 batches into mpq DEBUG:2026-07-09 23:23:03,373:[generators.py:676 - _stealer() ] test stealer thread 1 got 91 batches from mpq DEBUG:2026-07-09 23:24:15,249:[generators.py:814 - gen() ] test waiting to join process 0 DEBUG:2026-07-09 23:24:15,249:[generators.py:819 - gen() ] test waiting to join thread 0 DEBUG:2026-07-09 23:24:15,249:[generators.py:823 - gen() ] test join complete for process 0 DEBUG:2026-07-09 23:24:15,249:[generators.py:814 - gen() ] test waiting to join process 1 DEBUG:2026-07-09 23:24:15,249:[generators.py:819 - gen() ] test waiting to join thread 1 DEBUG:2026-07-09 23:24:15,249:[generators.py:823 - gen() ] test join complete for process 1 DEBUG:2026-07-09 23:24:15,249:[generators.py:826 - gen() ] test Finished join for epoch DEBUG:2026-07-09 23:24:15,249:[generators.py:828 - gen() ] test Ready for next epoch INFO:2026-07-09 23:24:15,249:[predict.py:731 - predict() ] Writing to h5 file ... INFO:2026-07-09 23:24:21,668:[predict.py:747 - predict() ] Elapsed Time: 99.055255651474 secs INFO:2026-07-09 23:24:21,668:[predict.py:751 - predict() ] Generating predicted profile bigWigs ... INFO:2026-07-09 23:24:21,668:[predict.py:753 - predict() ] predictions shape - (11619, 1000, 2) INFO:2026-07-09 23:24:21,671:[predict.py:775 - predict() ] bigWig HEADER - [('chr1', 248956422), ('chr10', 133797422), ('chr11', 135086622), ('chr12', 133275309), ('chr13', 114364328), ('chr14', 107043718), ('chr15', 101991189), ('chr16', 90338345), ('chr17', 83257441), ('chr18', 80373285), ('chr19', 58617616), ('chr2', 242193529), ('chr20', 64444167), ('chr21', 46709983), ('chr22', 50818468), ('chr3', 198295559), ('chr4', 190214555), ('chr5', 181538259), ('chr6', 170805979), ('chr7', 159345973), ('chr8', 145138636), ('chr9', 138394717), ('chrM', 16569), ('chrX', 156040895), ('chrY', 57227415)] INFO:2026-07-09 23:24:55,471:[predict.py:801 - predict() ] min max median INFO:2026-07-09 23:24:55,472:[predict.py:806 - predict() ] mnll 0.000 0.884 0.312 INFO:2026-07-09 23:24:55,472:[predict.py:811 - predict() ] cross_entropy 0.000 0.884 0.312 INFO:2026-07-09 23:24:55,472:[predict.py:816 - predict() ] jsd 0.034 0.876 0.589 INFO:2026-07-09 23:24:55,473:[predict.py:821 - predict() ] spearman -0.436 0.988 0.834 INFO:2026-07-09 23:24:55,473:[predict.py:826 - predict() ] pearson -0.420 0.978 0.732 INFO:2026-07-09 23:24:55,474:[predict.py:831 - predict() ] mse 0.003 5.416 0.057 INFO:2026-07-09 23:24:55,474:[predict.py:833 - predict() ] ============================================== INFO:2026-07-09 23:24:55,494:[predict.py:848 - predict() ] counts pearson: [0.52073776 0.52534122] INFO:2026-07-09 23:24:55,494:[predict.py:849 - predict() ] counts spearman: [0.51270122 0.51689025] INFO:2026-07-10 15:39:11,146:[predict.py:399 - predict() ] SEQGEN Class Name: MBPNetSequenceGenerator INFO:2026-07-10 15:39:12,970:[generators.py:483 - _pad_samples() ] mode 'test': Data size (after padding 31 samples) - 11648 INFO:2026-07-10 15:39:13,222:[predict.py:460 - predict() ] Writing predictions to predictions/SKNO-1_AE/fold_3/model_split000_predictions.h5 DEBUG:2026-07-10 15:39:13,243:[generators.py:731 - _epoch_run() ] test spawning process 0, df size (5824, 3) sum(num_batches) 91 DEBUG:2026-07-10 15:39:13,278:[generators.py:731 - _epoch_run() ] test spawning process 1, df size (5824, 3) sum(num_batches) 182 DEBUG:2026-07-10 15:39:13,328:[generators.py:757 - _epoch_run() ] test num_batches list [91, 91] DEBUG:2026-07-10 15:39:13,329:[generators.py:770 - _epoch_run() ] test starting stealer thread 0 [91] DEBUG:2026-07-10 15:39:13,329:[generators.py:770 - _epoch_run() ] test starting stealer thread 1 [91] DEBUG:2026-07-10 15:40:00,714:[generators.py:652 - _proc_target() ] test process 0 put 91 batches into mpq DEBUG:2026-07-10 15:40:00,731:[generators.py:676 - _stealer() ] test stealer thread 0 got 91 batches from mpq DEBUG:2026-07-10 15:40:01,462:[generators.py:676 - _stealer() ] test stealer thread 1 got 91 batches from mpq DEBUG:2026-07-10 15:40:01,446:[generators.py:652 - _proc_target() ] test process 1 put 91 batches into mpq DEBUG:2026-07-10 15:41:10,766:[generators.py:814 - gen() ] test waiting to join process 0 DEBUG:2026-07-10 15:41:10,766:[generators.py:819 - gen() ] test waiting to join thread 0 DEBUG:2026-07-10 15:41:10,766:[generators.py:823 - gen() ] test join complete for process 0 DEBUG:2026-07-10 15:41:10,766:[generators.py:814 - gen() ] test waiting to join process 1 DEBUG:2026-07-10 15:41:10,766:[generators.py:819 - gen() ] test waiting to join thread 1 DEBUG:2026-07-10 15:41:10,766:[generators.py:823 - gen() ] test join complete for process 1 DEBUG:2026-07-10 15:41:10,767:[generators.py:826 - gen() ] test Finished join for epoch DEBUG:2026-07-10 15:41:10,767:[generators.py:828 - gen() ] test Ready for next epoch INFO:2026-07-10 15:41:10,767:[predict.py:731 - predict() ] Writing to h5 file ... INFO:2026-07-10 15:41:17,059:[predict.py:747 - predict() ] Elapsed Time: 123.83061909675598 secs INFO:2026-07-10 15:41:17,059:[predict.py:751 - predict() ] Generating predicted profile bigWigs ... INFO:2026-07-10 15:41:17,059:[predict.py:753 - predict() ] predictions shape - (11617, 1000, 2) INFO:2026-07-10 15:41:17,066:[predict.py:775 - predict() ] bigWig HEADER - [('chr1', 248956422), ('chr10', 133797422), ('chr11', 135086622), ('chr12', 133275309), ('chr13', 114364328), ('chr14', 107043718), ('chr15', 101991189), ('chr16', 90338345), ('chr17', 83257441), ('chr18', 80373285), ('chr19', 58617616), ('chr2', 242193529), ('chr20', 64444167), ('chr21', 46709983), ('chr22', 50818468), ('chr3', 198295559), ('chr4', 190214555), ('chr5', 181538259), ('chr6', 170805979), ('chr7', 159345973), ('chr8', 145138636), ('chr9', 138394717), ('chrM', 16569), ('chrX', 156040895), ('chrY', 57227415)] INFO:2026-07-10 15:41:52,068:[predict.py:801 - predict() ] min max median INFO:2026-07-10 15:41:52,069:[predict.py:806 - predict() ] mnll 0.000 0.890 0.317 INFO:2026-07-10 15:41:52,069:[predict.py:811 - predict() ] cross_entropy 0.000 0.890 0.318 INFO:2026-07-10 15:41:52,070:[predict.py:816 - predict() ] jsd 0.019 0.881 0.598 INFO:2026-07-10 15:41:52,070:[predict.py:821 - predict() ] spearman -0.351 0.987 0.839 INFO:2026-07-10 15:41:52,071:[predict.py:826 - predict() ] pearson -0.388 0.977 0.735 INFO:2026-07-10 15:41:52,071:[predict.py:831 - predict() ] mse 0.003 4.687 0.056 INFO:2026-07-10 15:41:52,071:[predict.py:833 - predict() ] ============================================== INFO:2026-07-10 15:41:52,268:[predict.py:848 - predict() ] counts pearson: [0.56109971 0.56216869] INFO:2026-07-10 15:41:52,268:[predict.py:849 - predict() ] counts spearman: [0.55846459 0.55891544]