INFO:2026-07-09 23:19:31,635:[predict.py:399 - predict() ] SEQGEN Class Name: MBPNetSequenceGenerator INFO:2026-07-09 23:19:31,663:[generators.py:483 - _pad_samples() ] mode 'test': Data size (after padding 29 samples) - 11648 INFO:2026-07-09 23:19:31,667:[predict.py:460 - predict() ] Writing predictions to predictions/SKNO-1_AE/fold_2/model_split000_predictions.h5 DEBUG:2026-07-09 23:19:31,677:[generators.py:731 - _epoch_run() ] test spawning process 0, df size (5824, 3) sum(num_batches) 91 DEBUG:2026-07-09 23:19:31,703:[generators.py:731 - _epoch_run() ] test spawning process 1, df size (5824, 3) sum(num_batches) 182 DEBUG:2026-07-09 23:19:31,727:[generators.py:757 - _epoch_run() ] test num_batches list [91, 91] DEBUG:2026-07-09 23:19:31,727:[generators.py:770 - _epoch_run() ] test starting stealer thread 0 [91] DEBUG:2026-07-09 23:19:31,731:[generators.py:770 - _epoch_run() ] test starting stealer thread 1 [91] DEBUG:2026-07-09 23:19:44,946:[generators.py:676 - _stealer() ] test stealer thread 0 got 91 batches from mpq DEBUG:2026-07-09 23:19:44,929:[generators.py:652 - _proc_target() ] test process 0 put 91 batches into mpq DEBUG:2026-07-09 23:19:45,317:[generators.py:652 - _proc_target() ] test process 1 put 91 batches into mpq DEBUG:2026-07-09 23:19:45,362:[generators.py:676 - _stealer() ] test stealer thread 1 got 91 batches from mpq DEBUG:2026-07-09 23:20:42,178:[generators.py:814 - gen() ] test waiting to join process 0 DEBUG:2026-07-09 23:20:42,179:[generators.py:819 - gen() ] test waiting to join thread 0 DEBUG:2026-07-09 23:20:42,179:[generators.py:823 - gen() ] test join complete for process 0 DEBUG:2026-07-09 23:20:42,179:[generators.py:814 - gen() ] test waiting to join process 1 DEBUG:2026-07-09 23:20:42,179:[generators.py:819 - gen() ] test waiting to join thread 1 DEBUG:2026-07-09 23:20:42,179:[generators.py:823 - gen() ] test join complete for process 1 DEBUG:2026-07-09 23:20:42,179:[generators.py:826 - gen() ] test Finished join for epoch DEBUG:2026-07-09 23:20:42,179:[generators.py:828 - gen() ] test Ready for next epoch INFO:2026-07-09 23:20:42,179:[predict.py:731 - predict() ] Writing to h5 file ... INFO:2026-07-09 23:20:47,839:[predict.py:747 - predict() ] Elapsed Time: 76.17091178894043 secs INFO:2026-07-09 23:20:47,839:[predict.py:751 - predict() ] Generating predicted profile bigWigs ... INFO:2026-07-09 23:20:47,839:[predict.py:753 - predict() ] predictions shape - (11619, 1000, 2) INFO:2026-07-09 23:20:47,843:[predict.py:775 - predict() ] bigWig HEADER - [('chr1', 248956422), ('chr10', 133797422), ('chr11', 135086622), ('chr12', 133275309), ('chr13', 114364328), ('chr14', 107043718), ('chr15', 101991189), ('chr16', 90338345), ('chr17', 83257441), ('chr18', 80373285), ('chr19', 58617616), ('chr2', 242193529), ('chr20', 64444167), ('chr21', 46709983), ('chr22', 50818468), ('chr3', 198295559), ('chr4', 190214555), ('chr5', 181538259), ('chr6', 170805979), ('chr7', 159345973), ('chr8', 145138636), ('chr9', 138394717), ('chrM', 16569), ('chrX', 156040895), ('chrY', 57227415)] INFO:2026-07-09 23:21:16,769:[predict.py:801 - predict() ] min max median INFO:2026-07-09 23:21:16,771:[predict.py:806 - predict() ] mnll 0.000 0.887 0.315 INFO:2026-07-09 23:21:16,772:[predict.py:811 - predict() ] cross_entropy 0.000 0.887 0.316 INFO:2026-07-09 23:21:16,772:[predict.py:816 - predict() ] jsd 0.000 0.877 0.601 INFO:2026-07-09 23:21:16,773:[predict.py:821 - predict() ] spearman -0.376 0.988 0.836 INFO:2026-07-09 23:21:16,773:[predict.py:826 - predict() ] pearson -0.545 0.971 0.732 INFO:2026-07-09 23:21:16,773:[predict.py:831 - predict() ] mse 0.003 5.502 0.057 INFO:2026-07-09 23:21:16,773:[predict.py:833 - predict() ] ============================================== INFO:2026-07-09 23:21:16,787:[predict.py:848 - predict() ] counts pearson: [0.56854633 0.57184746] INFO:2026-07-09 23:21:16,787:[predict.py:849 - predict() ] counts spearman: [0.56232382 0.56718086] INFO:2026-07-10 15:50:36,687:[predict.py:399 - predict() ] SEQGEN Class Name: MBPNetSequenceGenerator INFO:2026-07-10 15:50:36,731:[generators.py:483 - _pad_samples() ] mode 'test': Data size (after padding 31 samples) - 11648 INFO:2026-07-10 15:50:36,773:[predict.py:460 - predict() ] Writing predictions to predictions/SKNO-1_AE/fold_2/model_split000_predictions.h5 DEBUG:2026-07-10 15:50:36,784:[generators.py:731 - _epoch_run() ] test spawning process 0, df size (5824, 3) sum(num_batches) 91 DEBUG:2026-07-10 15:50:36,851:[generators.py:731 - _epoch_run() ] test spawning process 1, df size (5824, 3) sum(num_batches) 182 DEBUG:2026-07-10 15:50:36,976:[generators.py:757 - _epoch_run() ] test num_batches list [91, 91] DEBUG:2026-07-10 15:50:36,976:[generators.py:770 - _epoch_run() ] test starting stealer thread 0 [91] DEBUG:2026-07-10 15:50:36,976:[generators.py:770 - _epoch_run() ] test starting stealer thread 1 [91] DEBUG:2026-07-10 15:51:12,673:[generators.py:652 - _proc_target() ] test process 0 put 91 batches into mpq DEBUG:2026-07-10 15:51:12,707:[generators.py:676 - _stealer() ] test stealer thread 0 got 91 batches from mpq DEBUG:2026-07-10 15:51:13,458:[generators.py:652 - _proc_target() ] test process 1 put 91 batches into mpq DEBUG:2026-07-10 15:51:13,498:[generators.py:676 - _stealer() ] test stealer thread 1 got 91 batches from mpq DEBUG:2026-07-10 16:00:55,479:[generators.py:814 - gen() ] test waiting to join process 0 DEBUG:2026-07-10 16:00:55,479:[generators.py:819 - gen() ] test waiting to join thread 0 DEBUG:2026-07-10 16:00:55,479:[generators.py:823 - gen() ] test join complete for process 0 DEBUG:2026-07-10 16:00:55,479:[generators.py:814 - gen() ] test waiting to join process 1 DEBUG:2026-07-10 16:00:55,479:[generators.py:819 - gen() ] test waiting to join thread 1 DEBUG:2026-07-10 16:00:55,479:[generators.py:823 - gen() ] test join complete for process 1 DEBUG:2026-07-10 16:00:55,479:[generators.py:826 - gen() ] test Finished join for epoch DEBUG:2026-07-10 16:00:55,479:[generators.py:828 - gen() ] test Ready for next epoch INFO:2026-07-10 16:00:55,479:[predict.py:731 - predict() ] Writing to h5 file ... INFO:2026-07-10 16:01:00,777:[predict.py:747 - predict() ] Elapsed Time: 624.002831697464 secs INFO:2026-07-10 16:01:00,777:[predict.py:751 - predict() ] Generating predicted profile bigWigs ... INFO:2026-07-10 16:01:00,777:[predict.py:753 - predict() ] predictions shape - (11617, 1000, 2) INFO:2026-07-10 16:01:00,781:[predict.py:775 - predict() ] bigWig HEADER - [('chr1', 248956422), ('chr10', 133797422), ('chr11', 135086622), ('chr12', 133275309), ('chr13', 114364328), ('chr14', 107043718), ('chr15', 101991189), ('chr16', 90338345), ('chr17', 83257441), ('chr18', 80373285), ('chr19', 58617616), ('chr2', 242193529), ('chr20', 64444167), ('chr21', 46709983), ('chr22', 50818468), ('chr3', 198295559), ('chr4', 190214555), ('chr5', 181538259), ('chr6', 170805979), ('chr7', 159345973), ('chr8', 145138636), ('chr9', 138394717), ('chrM', 16569), ('chrX', 156040895), ('chrY', 57227415)] INFO:2026-07-10 16:01:27,102:[predict.py:801 - predict() ] min max median INFO:2026-07-10 16:01:27,102:[predict.py:806 - predict() ] mnll 0.000 0.883 0.314 INFO:2026-07-10 16:01:27,103:[predict.py:811 - predict() ] cross_entropy 0.000 0.883 0.314 INFO:2026-07-10 16:01:27,103:[predict.py:816 - predict() ] jsd 0.021 0.878 0.594 INFO:2026-07-10 16:01:27,103:[predict.py:821 - predict() ] spearman -0.332 0.989 0.836 INFO:2026-07-10 16:01:27,104:[predict.py:826 - predict() ] pearson -0.544 0.978 0.733 INFO:2026-07-10 16:01:27,104:[predict.py:831 - predict() ] mse 0.002 5.152 0.057 INFO:2026-07-10 16:01:27,104:[predict.py:833 - predict() ] ============================================== INFO:2026-07-10 16:01:31,791:[predict.py:848 - predict() ] counts pearson: [0.55219681 0.5563749 ] INFO:2026-07-10 16:01:31,791:[predict.py:849 - predict() ] counts spearman: [0.54359506 0.54798835]