INFO:2026-07-09 23:22:55,121:[predict.py:399 - predict() ] SEQGEN Class Name: MBPNetSequenceGenerator INFO:2026-07-09 23:22:55,147:[generators.py:483 - _pad_samples() ] mode 'test': Data size (after padding 29 samples) - 11648 INFO:2026-07-09 23:22:55,150:[predict.py:460 - predict() ] Writing predictions to predictions/SKNO-1_AE/fold_1/model_split000_predictions.h5 DEBUG:2026-07-09 23:22:55,164:[generators.py:731 - _epoch_run() ] test spawning process 0, df size (5824, 3) sum(num_batches) 91 DEBUG:2026-07-09 23:22:55,218:[generators.py:731 - _epoch_run() ] test spawning process 1, df size (5824, 3) sum(num_batches) 182 DEBUG:2026-07-09 23:22:55,268:[generators.py:757 - _epoch_run() ] test num_batches list [91, 91] DEBUG:2026-07-09 23:22:55,269:[generators.py:770 - _epoch_run() ] test starting stealer thread 0 [91] DEBUG:2026-07-09 23:22:55,278:[generators.py:770 - _epoch_run() ] test starting stealer thread 1 [91] DEBUG:2026-07-09 23:23:10,568:[generators.py:652 - _proc_target() ] test process 0 put 91 batches into mpq DEBUG:2026-07-09 23:23:10,594:[generators.py:676 - _stealer() ] test stealer thread 0 got 91 batches from mpq DEBUG:2026-07-09 23:23:12,111:[generators.py:652 - _proc_target() ] test process 1 put 91 batches into mpq DEBUG:2026-07-09 23:23:12,136:[generators.py:676 - _stealer() ] test stealer thread 1 got 91 batches from mpq DEBUG:2026-07-09 23:33:43,743:[generators.py:814 - gen() ] test waiting to join process 0 DEBUG:2026-07-09 23:33:43,744:[generators.py:819 - gen() ] test waiting to join thread 0 DEBUG:2026-07-09 23:33:43,744:[generators.py:823 - gen() ] test join complete for process 0 DEBUG:2026-07-09 23:33:43,744:[generators.py:814 - gen() ] test waiting to join process 1 DEBUG:2026-07-09 23:33:43,744:[generators.py:819 - gen() ] test waiting to join thread 1 DEBUG:2026-07-09 23:33:43,744:[generators.py:823 - gen() ] test join complete for process 1 DEBUG:2026-07-09 23:33:43,744:[generators.py:826 - gen() ] test Finished join for epoch DEBUG:2026-07-09 23:33:43,744:[generators.py:828 - gen() ] test Ready for next epoch INFO:2026-07-09 23:33:43,744:[predict.py:731 - predict() ] Writing to h5 file ... INFO:2026-07-09 23:33:48,938:[predict.py:747 - predict() ] Elapsed Time: 653.7858991622925 secs INFO:2026-07-09 23:33:48,938:[predict.py:751 - predict() ] Generating predicted profile bigWigs ... INFO:2026-07-09 23:33:48,938:[predict.py:753 - predict() ] predictions shape - (11619, 1000, 2) INFO:2026-07-09 23:33:48,941:[predict.py:775 - predict() ] bigWig HEADER - [('chr1', 248956422), ('chr10', 133797422), ('chr11', 135086622), ('chr12', 133275309), ('chr13', 114364328), ('chr14', 107043718), ('chr15', 101991189), ('chr16', 90338345), ('chr17', 83257441), ('chr18', 80373285), ('chr19', 58617616), ('chr2', 242193529), ('chr20', 64444167), ('chr21', 46709983), ('chr22', 50818468), ('chr3', 198295559), ('chr4', 190214555), ('chr5', 181538259), ('chr6', 170805979), ('chr7', 159345973), ('chr8', 145138636), ('chr9', 138394717), ('chrM', 16569), ('chrX', 156040895), ('chrY', 57227415)] INFO:2026-07-09 23:34:14,517:[predict.py:801 - predict() ] min max median INFO:2026-07-09 23:34:14,518:[predict.py:806 - predict() ] mnll 0.000 0.894 0.316 INFO:2026-07-09 23:34:14,518:[predict.py:811 - predict() ] cross_entropy 0.000 0.894 0.316 INFO:2026-07-09 23:34:14,518:[predict.py:816 - predict() ] jsd 0.012 0.888 0.601 INFO:2026-07-09 23:34:14,519:[predict.py:821 - predict() ] spearman -0.313 0.988 0.839 INFO:2026-07-09 23:34:14,519:[predict.py:826 - predict() ] pearson -0.419 0.977 0.734 INFO:2026-07-09 23:34:14,519:[predict.py:831 - predict() ] mse 0.003 5.559 0.057 INFO:2026-07-09 23:34:14,519:[predict.py:833 - predict() ] ============================================== INFO:2026-07-09 23:34:14,532:[predict.py:848 - predict() ] counts pearson: [0.57826819 0.58243662] INFO:2026-07-09 23:34:14,532:[predict.py:849 - predict() ] counts spearman: [0.58041409 0.58570552] INFO:2026-07-10 15:42:32,144:[predict.py:399 - predict() ] SEQGEN Class Name: MBPNetSequenceGenerator INFO:2026-07-10 15:42:32,206:[generators.py:483 - _pad_samples() ] mode 'test': Data size (after padding 31 samples) - 11648 INFO:2026-07-10 15:42:32,297:[predict.py:460 - predict() ] Writing predictions to predictions/SKNO-1_AE/fold_1/model_split000_predictions.h5 DEBUG:2026-07-10 15:42:32,316:[generators.py:731 - _epoch_run() ] test spawning process 0, df size (5824, 3) sum(num_batches) 91 DEBUG:2026-07-10 15:42:32,350:[generators.py:731 - _epoch_run() ] test spawning process 1, df size (5824, 3) sum(num_batches) 182 DEBUG:2026-07-10 15:42:32,397:[generators.py:757 - _epoch_run() ] test num_batches list [91, 91] DEBUG:2026-07-10 15:42:32,397:[generators.py:770 - _epoch_run() ] test starting stealer thread 0 [91] DEBUG:2026-07-10 15:42:32,406:[generators.py:770 - _epoch_run() ] test starting stealer thread 1 [91] DEBUG:2026-07-10 15:43:25,932:[generators.py:652 - _proc_target() ] test process 0 put 91 batches into mpq DEBUG:2026-07-10 15:43:25,961:[generators.py:676 - _stealer() ] test stealer thread 0 got 91 batches from mpq DEBUG:2026-07-10 15:43:26,653:[generators.py:676 - _stealer() ] test stealer thread 1 got 91 batches from mpq DEBUG:2026-07-10 15:43:26,637:[generators.py:652 - _proc_target() ] test process 1 put 91 batches into mpq DEBUG:2026-07-10 15:44:34,197:[generators.py:814 - gen() ] test waiting to join process 0 DEBUG:2026-07-10 15:44:34,197:[generators.py:819 - gen() ] test waiting to join thread 0 DEBUG:2026-07-10 15:44:34,197:[generators.py:823 - gen() ] test join complete for process 0 DEBUG:2026-07-10 15:44:34,197:[generators.py:814 - gen() ] test waiting to join process 1 DEBUG:2026-07-10 15:44:34,198:[generators.py:819 - gen() ] test waiting to join thread 1 DEBUG:2026-07-10 15:44:34,198:[generators.py:823 - gen() ] test join complete for process 1 DEBUG:2026-07-10 15:44:34,198:[generators.py:826 - gen() ] test Finished join for epoch DEBUG:2026-07-10 15:44:34,198:[generators.py:828 - gen() ] test Ready for next epoch INFO:2026-07-10 15:44:34,198:[predict.py:731 - predict() ] Writing to h5 file ... INFO:2026-07-10 15:44:40,649:[predict.py:747 - predict() ] Elapsed Time: 128.34692358970642 secs INFO:2026-07-10 15:44:40,649:[predict.py:751 - predict() ] Generating predicted profile bigWigs ... INFO:2026-07-10 15:44:40,649:[predict.py:753 - predict() ] predictions shape - (11617, 1000, 2) INFO:2026-07-10 15:44:40,655:[predict.py:775 - predict() ] bigWig HEADER - [('chr1', 248956422), ('chr10', 133797422), ('chr11', 135086622), ('chr12', 133275309), ('chr13', 114364328), ('chr14', 107043718), ('chr15', 101991189), ('chr16', 90338345), ('chr17', 83257441), ('chr18', 80373285), ('chr19', 58617616), ('chr2', 242193529), ('chr20', 64444167), ('chr21', 46709983), ('chr22', 50818468), ('chr3', 198295559), ('chr4', 190214555), ('chr5', 181538259), ('chr6', 170805979), ('chr7', 159345973), ('chr8', 145138636), ('chr9', 138394717), ('chrM', 16569), ('chrX', 156040895), ('chrY', 57227415)] INFO:2026-07-10 15:45:16,411:[predict.py:801 - predict() ] min max median INFO:2026-07-10 15:45:16,412:[predict.py:806 - predict() ] mnll 0.000 0.893 0.316 INFO:2026-07-10 15:45:16,412:[predict.py:811 - predict() ] cross_entropy 0.000 0.893 0.317 INFO:2026-07-10 15:45:16,413:[predict.py:816 - predict() ] jsd 0.019 0.885 0.602 INFO:2026-07-10 15:45:16,413:[predict.py:821 - predict() ] spearman -0.365 0.986 0.838 INFO:2026-07-10 15:45:16,414:[predict.py:826 - predict() ] pearson -0.479 0.982 0.733 INFO:2026-07-10 15:45:16,414:[predict.py:831 - predict() ] mse 0.003 4.658 0.057 INFO:2026-07-10 15:45:16,414:[predict.py:833 - predict() ] ============================================== INFO:2026-07-10 15:45:16,673:[predict.py:848 - predict() ] counts pearson: [0.56236514 0.56639258] INFO:2026-07-10 15:45:16,674:[predict.py:849 - predict() ] counts spearman: [0.56182663 0.56662654]