INFO:2026-07-09 23:52:19,893:[predict.py:399 - predict() ] SEQGEN Class Name: MBPNetSequenceGenerator INFO:2026-07-09 23:52:19,923:[generators.py:483 - _pad_samples() ] mode 'test': Data size (after padding 29 samples) - 11648 INFO:2026-07-09 23:52:19,926:[predict.py:460 - predict() ] Writing predictions to predictions/SKNO-1_AE/fold_0/model_split000_predictions.h5 DEBUG:2026-07-09 23:52:19,971:[generators.py:731 - _epoch_run() ] test spawning process 0, df size (5824, 3) sum(num_batches) 91 DEBUG:2026-07-09 23:52:20,006:[generators.py:731 - _epoch_run() ] test spawning process 1, df size (5824, 3) sum(num_batches) 182 DEBUG:2026-07-09 23:52:20,029:[generators.py:757 - _epoch_run() ] test num_batches list [91, 91] DEBUG:2026-07-09 23:52:20,030:[generators.py:770 - _epoch_run() ] test starting stealer thread 0 [91] DEBUG:2026-07-09 23:52:20,030:[generators.py:770 - _epoch_run() ] test starting stealer thread 1 [91] DEBUG:2026-07-09 23:52:34,416:[generators.py:676 - _stealer() ] test stealer thread 0 got 91 batches from mpq DEBUG:2026-07-09 23:52:34,398:[generators.py:652 - _proc_target() ] test process 0 put 91 batches into mpq DEBUG:2026-07-09 23:52:34,607:[generators.py:676 - _stealer() ] test stealer thread 1 got 91 batches from mpq DEBUG:2026-07-09 23:52:34,590:[generators.py:652 - _proc_target() ] test process 1 put 91 batches into mpq DEBUG:2026-07-09 23:53:49,422:[generators.py:814 - gen() ] test waiting to join process 0 DEBUG:2026-07-09 23:53:49,423:[generators.py:819 - gen() ] test waiting to join thread 0 DEBUG:2026-07-09 23:53:49,423:[generators.py:823 - gen() ] test join complete for process 0 DEBUG:2026-07-09 23:53:49,423:[generators.py:814 - gen() ] test waiting to join process 1 DEBUG:2026-07-09 23:53:49,423:[generators.py:819 - gen() ] test waiting to join thread 1 DEBUG:2026-07-09 23:53:49,423:[generators.py:823 - gen() ] test join complete for process 1 DEBUG:2026-07-09 23:53:49,423:[generators.py:826 - gen() ] test Finished join for epoch DEBUG:2026-07-09 23:53:49,423:[generators.py:828 - gen() ] test Ready for next epoch INFO:2026-07-09 23:53:49,423:[predict.py:731 - predict() ] Writing to h5 file ... INFO:2026-07-09 23:53:55,056:[predict.py:747 - predict() ] Elapsed Time: 95.12779521942139 secs INFO:2026-07-09 23:53:55,056:[predict.py:751 - predict() ] Generating predicted profile bigWigs ... INFO:2026-07-09 23:53:55,056:[predict.py:753 - predict() ] predictions shape - (11619, 1000, 2) INFO:2026-07-09 23:53:55,059:[predict.py:775 - predict() ] bigWig HEADER - [('chr1', 248956422), ('chr10', 133797422), ('chr11', 135086622), ('chr12', 133275309), ('chr13', 114364328), ('chr14', 107043718), ('chr15', 101991189), ('chr16', 90338345), ('chr17', 83257441), ('chr18', 80373285), ('chr19', 58617616), ('chr2', 242193529), ('chr20', 64444167), ('chr21', 46709983), ('chr22', 50818468), ('chr3', 198295559), ('chr4', 190214555), ('chr5', 181538259), ('chr6', 170805979), ('chr7', 159345973), ('chr8', 145138636), ('chr9', 138394717), ('chrM', 16569), ('chrX', 156040895), ('chrY', 57227415)] INFO:2026-07-09 23:54:23,271:[predict.py:801 - predict() ] min max median INFO:2026-07-09 23:54:23,271:[predict.py:806 - predict() ] mnll 0.000 0.892 0.316 INFO:2026-07-09 23:54:23,272:[predict.py:811 - predict() ] cross_entropy 0.000 0.892 0.316 INFO:2026-07-09 23:54:23,272:[predict.py:816 - predict() ] jsd 0.014 0.883 0.597 INFO:2026-07-09 23:54:23,272:[predict.py:821 - predict() ] spearman -0.334 0.990 0.836 INFO:2026-07-09 23:54:23,273:[predict.py:826 - predict() ] pearson -0.537 0.980 0.733 INFO:2026-07-09 23:54:23,273:[predict.py:831 - predict() ] mse 0.002 5.468 0.057 INFO:2026-07-09 23:54:23,273:[predict.py:833 - predict() ] ============================================== INFO:2026-07-09 23:54:23,323:[predict.py:848 - predict() ] counts pearson: [0.54677775 0.55096063] INFO:2026-07-09 23:54:23,323:[predict.py:849 - predict() ] counts spearman: [0.54102061 0.54557892] INFO:2026-07-10 15:37:23,301:[predict.py:399 - predict() ] SEQGEN Class Name: MBPNetSequenceGenerator INFO:2026-07-10 15:37:23,338:[generators.py:483 - _pad_samples() ] mode 'test': Data size (after padding 31 samples) - 11648 INFO:2026-07-10 15:37:23,359:[predict.py:460 - predict() ] Writing predictions to predictions/SKNO-1_AE/fold_0/model_split000_predictions.h5 DEBUG:2026-07-10 15:37:23,370:[generators.py:731 - _epoch_run() ] test spawning process 0, df size (5824, 3) sum(num_batches) 91 DEBUG:2026-07-10 15:37:23,429:[generators.py:731 - _epoch_run() ] test spawning process 1, df size (5824, 3) sum(num_batches) 182 DEBUG:2026-07-10 15:37:23,541:[generators.py:757 - _epoch_run() ] test num_batches list [91, 91] DEBUG:2026-07-10 15:37:23,541:[generators.py:770 - _epoch_run() ] test starting stealer thread 0 [91] DEBUG:2026-07-10 15:37:23,541:[generators.py:770 - _epoch_run() ] test starting stealer thread 1 [91] DEBUG:2026-07-10 15:37:56,775:[generators.py:676 - _stealer() ] test stealer thread 0 got 91 batches from mpq DEBUG:2026-07-10 15:37:56,760:[generators.py:652 - _proc_target() ] test process 0 put 91 batches into mpq DEBUG:2026-07-10 15:37:57,430:[generators.py:676 - _stealer() ] test stealer thread 1 got 91 batches from mpq DEBUG:2026-07-10 15:37:57,415:[generators.py:652 - _proc_target() ] test process 1 put 91 batches into mpq DEBUG:2026-07-10 15:44:33,257:[generators.py:814 - gen() ] test waiting to join process 0 DEBUG:2026-07-10 15:44:33,257:[generators.py:819 - gen() ] test waiting to join thread 0 DEBUG:2026-07-10 15:44:33,257:[generators.py:823 - gen() ] test join complete for process 0 DEBUG:2026-07-10 15:44:33,257:[generators.py:814 - gen() ] test waiting to join process 1 DEBUG:2026-07-10 15:44:33,257:[generators.py:819 - gen() ] test waiting to join thread 1 DEBUG:2026-07-10 15:44:33,257:[generators.py:823 - gen() ] test join complete for process 1 DEBUG:2026-07-10 15:44:33,257:[generators.py:826 - gen() ] test Finished join for epoch DEBUG:2026-07-10 15:44:33,257:[generators.py:828 - gen() ] test Ready for next epoch INFO:2026-07-10 15:44:33,257:[predict.py:731 - predict() ] Writing to h5 file ... INFO:2026-07-10 15:44:38,490:[predict.py:747 - predict() ] Elapsed Time: 435.1291871070862 secs INFO:2026-07-10 15:44:38,490:[predict.py:751 - predict() ] Generating predicted profile bigWigs ... INFO:2026-07-10 15:44:38,490:[predict.py:753 - predict() ] predictions shape - (11617, 1000, 2) INFO:2026-07-10 15:44:38,494:[predict.py:775 - predict() ] bigWig HEADER - [('chr1', 248956422), ('chr10', 133797422), ('chr11', 135086622), ('chr12', 133275309), ('chr13', 114364328), ('chr14', 107043718), ('chr15', 101991189), ('chr16', 90338345), ('chr17', 83257441), ('chr18', 80373285), ('chr19', 58617616), ('chr2', 242193529), ('chr20', 64444167), ('chr21', 46709983), ('chr22', 50818468), ('chr3', 198295559), ('chr4', 190214555), ('chr5', 181538259), ('chr6', 170805979), ('chr7', 159345973), ('chr8', 145138636), ('chr9', 138394717), ('chrM', 16569), ('chrX', 156040895), ('chrY', 57227415)] INFO:2026-07-10 15:45:04,203:[predict.py:801 - predict() ] min max median INFO:2026-07-10 15:45:04,203:[predict.py:806 - predict() ] mnll 0.000 0.899 0.318 INFO:2026-07-10 15:45:04,204:[predict.py:811 - predict() ] cross_entropy 0.000 0.899 0.318 INFO:2026-07-10 15:45:04,204:[predict.py:816 - predict() ] jsd 0.017 0.877 0.604 INFO:2026-07-10 15:45:04,204:[predict.py:821 - predict() ] spearman -0.280 0.988 0.839 INFO:2026-07-10 15:45:04,205:[predict.py:826 - predict() ] pearson -0.520 0.977 0.735 INFO:2026-07-10 15:45:04,205:[predict.py:831 - predict() ] mse 0.002 4.572 0.057 INFO:2026-07-10 15:45:04,205:[predict.py:833 - predict() ] ============================================== INFO:2026-07-10 15:45:04,420:[predict.py:848 - predict() ] counts pearson: [0.57032915 0.57456545] INFO:2026-07-10 15:45:04,420:[predict.py:849 - predict() ] counts spearman: [0.56951326 0.57359687]