INFO:2026-07-10 00:04:59,321:[predict.py:399 - predict() ] SEQGEN Class Name: MBPNetSequenceGenerator INFO:2026-07-10 00:04:59,334:[generators.py:483 - _pad_samples() ] mode 'test': Data size (after padding 88 samples) - 128 INFO:2026-07-10 00:04:59,337:[predict.py:460 - predict() ] Writing predictions to predictions/RUNX1_Kasumi-1_ChIPSeq/fold_4/model_split000_predictions.h5 DEBUG:2026-07-10 00:04:59,351:[generators.py:731 - _epoch_run() ] test spawning process 0, df size (64, 3) sum(num_batches) 1 DEBUG:2026-07-10 00:04:59,425:[generators.py:731 - _epoch_run() ] test spawning process 1, df size (64, 3) sum(num_batches) 2 DEBUG:2026-07-10 00:04:59,496:[generators.py:757 - _epoch_run() ] test num_batches list [1, 1] DEBUG:2026-07-10 00:04:59,497:[generators.py:770 - _epoch_run() ] test starting stealer thread 0 [1] DEBUG:2026-07-10 00:04:59,497:[generators.py:770 - _epoch_run() ] test starting stealer thread 1 [1] DEBUG:2026-07-10 00:04:59,759:[generators.py:652 - _proc_target() ] test process 0 put 1 batches into mpq DEBUG:2026-07-10 00:04:59,782:[generators.py:652 - _proc_target() ] test process 1 put 1 batches into mpq DEBUG:2026-07-10 00:04:59,786:[generators.py:676 - _stealer() ] test stealer thread 0 got 1 batches from mpq DEBUG:2026-07-10 00:04:59,840:[generators.py:676 - _stealer() ] test stealer thread 1 got 1 batches from mpq DEBUG:2026-07-10 00:10:22,955:[generators.py:814 - gen() ] test waiting to join process 0 DEBUG:2026-07-10 00:10:22,956:[generators.py:819 - gen() ] test waiting to join thread 0 DEBUG:2026-07-10 00:10:22,956:[generators.py:823 - gen() ] test join complete for process 0 DEBUG:2026-07-10 00:10:22,956:[generators.py:814 - gen() ] test waiting to join process 1 DEBUG:2026-07-10 00:10:22,956:[generators.py:819 - gen() ] test waiting to join thread 1 DEBUG:2026-07-10 00:10:22,956:[generators.py:823 - gen() ] test join complete for process 1 DEBUG:2026-07-10 00:10:22,956:[generators.py:826 - gen() ] test Finished join for epoch DEBUG:2026-07-10 00:10:22,956:[generators.py:828 - gen() ] test Ready for next epoch INFO:2026-07-10 00:10:22,956:[predict.py:731 - predict() ] Writing to h5 file ... INFO:2026-07-10 00:10:22,974:[predict.py:747 - predict() ] Elapsed Time: 323.63538813591003 secs INFO:2026-07-10 00:10:22,974:[predict.py:751 - predict() ] Generating predicted profile bigWigs ... INFO:2026-07-10 00:10:22,975:[predict.py:753 - predict() ] predictions shape - (40, 1000, 2) INFO:2026-07-10 00:10:22,978:[predict.py:775 - predict() ] bigWig HEADER - [('chr1', 248956422), ('chr10', 133797422), ('chr11', 135086622), ('chr12', 133275309), ('chr13', 114364328), ('chr14', 107043718), ('chr15', 101991189), ('chr16', 90338345), ('chr17', 83257441), ('chr18', 80373285), ('chr19', 58617616), ('chr2', 242193529), ('chr20', 64444167), ('chr21', 46709983), ('chr22', 50818468), ('chr3', 198295559), ('chr4', 190214555), ('chr5', 181538259), ('chr6', 170805979), ('chr7', 159345973), ('chr8', 145138636), ('chr9', 138394717), ('chrM', 16569), ('chrX', 156040895), ('chrY', 57227415)] INFO:2026-07-10 00:10:23,077:[predict.py:801 - predict() ] min max median INFO:2026-07-10 00:10:23,078:[predict.py:806 - predict() ] mnll 0.000 0.315 0.028 INFO:2026-07-10 00:10:23,078:[predict.py:811 - predict() ] cross_entropy 0.000 0.315 0.028 INFO:2026-07-10 00:10:23,078:[predict.py:816 - predict() ] jsd 0.014 0.583 0.307 INFO:2026-07-10 00:10:23,078:[predict.py:821 - predict() ] spearman -0.626 0.812 0.193 INFO:2026-07-10 00:10:23,078:[predict.py:826 - predict() ] pearson -0.723 0.842 0.296 INFO:2026-07-10 00:10:23,078:[predict.py:831 - predict() ] mse 0.048 7.570 0.158 INFO:2026-07-10 00:10:23,078:[predict.py:833 - predict() ] ============================================== INFO:2026-07-10 00:10:23,086:[predict.py:848 - predict() ] counts pearson: [0.15585472 0.12916913] INFO:2026-07-10 00:10:23,086:[predict.py:849 - predict() ] counts spearman: [0.28464209 0.27771263] INFO:2026-07-10 15:26:37,560:[predict.py:399 - predict() ] SEQGEN Class Name: MBPNetSequenceGenerator INFO:2026-07-10 15:26:37,580:[generators.py:483 - _pad_samples() ] mode 'test': Data size (after padding 88 samples) - 128 INFO:2026-07-10 15:26:37,598:[predict.py:460 - predict() ] Writing predictions to predictions/RUNX1_Kasumi-1_ChIPSeq/fold_4/model_split000_predictions.h5 DEBUG:2026-07-10 15:26:37,614:[generators.py:731 - _epoch_run() ] test spawning process 0, df size (64, 3) sum(num_batches) 1 DEBUG:2026-07-10 15:26:37,636:[generators.py:731 - _epoch_run() ] test spawning process 1, df size (64, 3) sum(num_batches) 2 DEBUG:2026-07-10 15:26:37,654:[generators.py:757 - _epoch_run() ] test num_batches list [1, 1] DEBUG:2026-07-10 15:26:37,655:[generators.py:770 - _epoch_run() ] test starting stealer thread 0 [1] DEBUG:2026-07-10 15:26:37,655:[generators.py:770 - _epoch_run() ] test starting stealer thread 1 [1] DEBUG:2026-07-10 15:26:37,965:[generators.py:652 - _proc_target() ] test process 1 put 1 batches into mpq DEBUG:2026-07-10 15:26:37,969:[generators.py:652 - _proc_target() ] test process 0 put 1 batches into mpq DEBUG:2026-07-10 15:26:37,992:[generators.py:676 - _stealer() ] test stealer thread 1 got 1 batches from mpq DEBUG:2026-07-10 15:26:38,009:[generators.py:676 - _stealer() ] test stealer thread 0 got 1 batches from mpq DEBUG:2026-07-10 15:26:57,856:[generators.py:814 - gen() ] test waiting to join process 0 DEBUG:2026-07-10 15:26:57,856:[generators.py:819 - gen() ] test waiting to join thread 0 DEBUG:2026-07-10 15:26:57,856:[generators.py:823 - gen() ] test join complete for process 0 DEBUG:2026-07-10 15:26:57,857:[generators.py:814 - gen() ] test waiting to join process 1 DEBUG:2026-07-10 15:26:57,857:[generators.py:819 - gen() ] test waiting to join thread 1 DEBUG:2026-07-10 15:26:57,857:[generators.py:823 - gen() ] test join complete for process 1 DEBUG:2026-07-10 15:26:57,857:[generators.py:826 - gen() ] test Finished join for epoch DEBUG:2026-07-10 15:26:57,857:[generators.py:828 - gen() ] test Ready for next epoch INFO:2026-07-10 15:26:57,857:[predict.py:731 - predict() ] Writing to h5 file ... INFO:2026-07-10 15:26:57,876:[predict.py:747 - predict() ] Elapsed Time: 20.276918172836304 secs INFO:2026-07-10 15:26:57,876:[predict.py:751 - predict() ] Generating predicted profile bigWigs ... INFO:2026-07-10 15:26:57,876:[predict.py:753 - predict() ] predictions shape - (40, 1000, 2) INFO:2026-07-10 15:26:57,880:[predict.py:775 - predict() ] bigWig HEADER - [('chr1', 248956422), ('chr10', 133797422), ('chr11', 135086622), ('chr12', 133275309), ('chr13', 114364328), ('chr14', 107043718), ('chr15', 101991189), ('chr16', 90338345), ('chr17', 83257441), ('chr18', 80373285), ('chr19', 58617616), ('chr2', 242193529), ('chr20', 64444167), ('chr21', 46709983), ('chr22', 50818468), ('chr3', 198295559), ('chr4', 190214555), ('chr5', 181538259), ('chr6', 170805979), ('chr7', 159345973), ('chr8', 145138636), ('chr9', 138394717), ('chrM', 16569), ('chrX', 156040895), ('chrY', 57227415)] INFO:2026-07-10 15:26:58,070:[predict.py:801 - predict() ] min max median INFO:2026-07-10 15:26:58,070:[predict.py:806 - predict() ] mnll 0.000 0.354 0.051 INFO:2026-07-10 15:26:58,070:[predict.py:811 - predict() ] cross_entropy 0.000 0.354 0.051 INFO:2026-07-10 15:26:58,071:[predict.py:816 - predict() ] jsd 0.032 0.514 0.300 INFO:2026-07-10 15:26:58,071:[predict.py:821 - predict() ] spearman -0.454 0.834 0.315 INFO:2026-07-10 15:26:58,071:[predict.py:826 - predict() ] pearson -0.516 0.826 0.379 INFO:2026-07-10 15:26:58,071:[predict.py:831 - predict() ] mse 0.047 7.523 0.164 INFO:2026-07-10 15:26:58,071:[predict.py:833 - predict() ] ============================================== INFO:2026-07-10 15:26:58,164:[predict.py:848 - predict() ] counts pearson: [0.07174264 0.07872108] INFO:2026-07-10 15:26:58,164:[predict.py:849 - predict() ] counts spearman: [0.17262407 0.24994136]