INFO:2026-07-09 23:45:07,151:[predict.py:399 - predict() ] SEQGEN Class Name: MBPNetSequenceGenerator INFO:2026-07-09 23:45:07,168:[generators.py:483 - _pad_samples() ] mode 'test': Data size (after padding 88 samples) - 128 INFO:2026-07-09 23:45:07,172:[predict.py:460 - predict() ] Writing predictions to predictions/RUNX1_Kasumi-1_ChIPSeq/fold_3/model_split000_predictions.h5 DEBUG:2026-07-09 23:45:07,186:[generators.py:731 - _epoch_run() ] test spawning process 0, df size (64, 3) sum(num_batches) 1 DEBUG:2026-07-09 23:45:07,218:[generators.py:731 - _epoch_run() ] test spawning process 1, df size (64, 3) sum(num_batches) 2 DEBUG:2026-07-09 23:45:07,270:[generators.py:757 - _epoch_run() ] test num_batches list [1, 1] DEBUG:2026-07-09 23:45:07,270:[generators.py:770 - _epoch_run() ] test starting stealer thread 0 [1] DEBUG:2026-07-09 23:45:07,271:[generators.py:770 - _epoch_run() ] test starting stealer thread 1 [1] DEBUG:2026-07-09 23:45:07,769:[generators.py:652 - _proc_target() ] test process 0 put 1 batches into mpq DEBUG:2026-07-09 23:45:07,813:[generators.py:676 - _stealer() ] test stealer thread 0 got 1 batches from mpq DEBUG:2026-07-09 23:45:07,871:[generators.py:652 - _proc_target() ] test process 1 put 1 batches into mpq DEBUG:2026-07-09 23:45:07,933:[generators.py:676 - _stealer() ] test stealer thread 1 got 1 batches from mpq DEBUG:2026-07-09 23:45:32,625:[generators.py:814 - gen() ] test waiting to join process 0 DEBUG:2026-07-09 23:45:32,625:[generators.py:819 - gen() ] test waiting to join thread 0 DEBUG:2026-07-09 23:45:32,625:[generators.py:823 - gen() ] test join complete for process 0 DEBUG:2026-07-09 23:45:32,625:[generators.py:814 - gen() ] test waiting to join process 1 DEBUG:2026-07-09 23:45:32,625:[generators.py:819 - gen() ] test waiting to join thread 1 DEBUG:2026-07-09 23:45:32,626:[generators.py:823 - gen() ] test join complete for process 1 DEBUG:2026-07-09 23:45:32,626:[generators.py:826 - gen() ] test Finished join for epoch DEBUG:2026-07-09 23:45:32,626:[generators.py:828 - gen() ] test Ready for next epoch INFO:2026-07-09 23:45:32,626:[predict.py:731 - predict() ] Writing to h5 file ... INFO:2026-07-09 23:45:32,652:[predict.py:747 - predict() ] Elapsed Time: 25.477899074554443 secs INFO:2026-07-09 23:45:32,652:[predict.py:751 - predict() ] Generating predicted profile bigWigs ... INFO:2026-07-09 23:45:32,652:[predict.py:753 - predict() ] predictions shape - (40, 1000, 2) INFO:2026-07-09 23:45:32,657:[predict.py:775 - predict() ] bigWig HEADER - [('chr1', 248956422), ('chr10', 133797422), ('chr11', 135086622), ('chr12', 133275309), ('chr13', 114364328), ('chr14', 107043718), ('chr15', 101991189), ('chr16', 90338345), ('chr17', 83257441), ('chr18', 80373285), ('chr19', 58617616), ('chr2', 242193529), ('chr20', 64444167), ('chr21', 46709983), ('chr22', 50818468), ('chr3', 198295559), ('chr4', 190214555), ('chr5', 181538259), ('chr6', 170805979), ('chr7', 159345973), ('chr8', 145138636), ('chr9', 138394717), ('chrM', 16569), ('chrX', 156040895), ('chrY', 57227415)] INFO:2026-07-09 23:45:32,811:[predict.py:801 - predict() ] min max median INFO:2026-07-09 23:45:32,812:[predict.py:806 - predict() ] mnll 0.000 0.281 0.007 INFO:2026-07-09 23:45:32,812:[predict.py:811 - predict() ] cross_entropy 0.000 0.281 0.007 INFO:2026-07-09 23:45:32,812:[predict.py:816 - predict() ] jsd 0.059 0.541 0.299 INFO:2026-07-09 23:45:32,812:[predict.py:821 - predict() ] spearman -0.260 0.657 0.098 INFO:2026-07-09 23:45:32,812:[predict.py:826 - predict() ] pearson -0.258 0.758 0.100 INFO:2026-07-09 23:45:32,812:[predict.py:831 - predict() ] mse 0.070 7.132 0.241 INFO:2026-07-09 23:45:32,813:[predict.py:833 - predict() ] ============================================== INFO:2026-07-09 23:45:32,823:[predict.py:848 - predict() ] counts pearson: [0.01384182 0.03839163] INFO:2026-07-09 23:45:32,824:[predict.py:849 - predict() ] counts spearman: [0.15676893 0.19749496] INFO:2026-07-10 15:08:13,563:[predict.py:399 - predict() ] SEQGEN Class Name: MBPNetSequenceGenerator INFO:2026-07-10 15:08:13,616:[generators.py:483 - _pad_samples() ] mode 'test': Data size (after padding 88 samples) - 128 INFO:2026-07-10 15:08:13,623:[predict.py:460 - predict() ] Writing predictions to predictions/RUNX1_Kasumi-1_ChIPSeq/fold_3/model_split000_predictions.h5 DEBUG:2026-07-10 15:08:13,648:[generators.py:731 - _epoch_run() ] test spawning process 0, df size (64, 3) sum(num_batches) 1 DEBUG:2026-07-10 15:08:13,677:[generators.py:731 - _epoch_run() ] test spawning process 1, df size (64, 3) sum(num_batches) 2 DEBUG:2026-07-10 15:08:13,698:[generators.py:757 - _epoch_run() ] test num_batches list [1, 1] DEBUG:2026-07-10 15:08:13,698:[generators.py:770 - _epoch_run() ] test starting stealer thread 0 [1] DEBUG:2026-07-10 15:08:13,699:[generators.py:770 - _epoch_run() ] test starting stealer thread 1 [1] DEBUG:2026-07-10 15:08:14,121:[generators.py:652 - _proc_target() ] test process 1 put 1 batches into mpq DEBUG:2026-07-10 15:08:14,159:[generators.py:676 - _stealer() ] test stealer thread 1 got 1 batches from mpq DEBUG:2026-07-10 15:08:14,219:[generators.py:652 - _proc_target() ] test process 0 put 1 batches into mpq DEBUG:2026-07-10 15:08:14,269:[generators.py:676 - _stealer() ] test stealer thread 0 got 1 batches from mpq DEBUG:2026-07-10 15:08:24,573:[generators.py:814 - gen() ] test waiting to join process 0 DEBUG:2026-07-10 15:08:24,573:[generators.py:819 - gen() ] test waiting to join thread 0 DEBUG:2026-07-10 15:08:24,573:[generators.py:823 - gen() ] test join complete for process 0 DEBUG:2026-07-10 15:08:24,573:[generators.py:814 - gen() ] test waiting to join process 1 DEBUG:2026-07-10 15:08:24,573:[generators.py:819 - gen() ] test waiting to join thread 1 DEBUG:2026-07-10 15:08:24,573:[generators.py:823 - gen() ] test join complete for process 1 DEBUG:2026-07-10 15:08:24,573:[generators.py:826 - gen() ] test Finished join for epoch DEBUG:2026-07-10 15:08:24,574:[generators.py:828 - gen() ] test Ready for next epoch INFO:2026-07-10 15:08:24,574:[predict.py:731 - predict() ] Writing to h5 file ... INFO:2026-07-10 15:08:24,600:[predict.py:747 - predict() ] Elapsed Time: 10.972967863082886 secs INFO:2026-07-10 15:08:24,600:[predict.py:751 - predict() ] Generating predicted profile bigWigs ... INFO:2026-07-10 15:08:24,600:[predict.py:753 - predict() ] predictions shape - (40, 1000, 2) INFO:2026-07-10 15:08:24,605:[predict.py:775 - predict() ] bigWig HEADER - [('chr1', 248956422), ('chr10', 133797422), ('chr11', 135086622), ('chr12', 133275309), ('chr13', 114364328), ('chr14', 107043718), ('chr15', 101991189), ('chr16', 90338345), ('chr17', 83257441), ('chr18', 80373285), ('chr19', 58617616), ('chr2', 242193529), ('chr20', 64444167), ('chr21', 46709983), ('chr22', 50818468), ('chr3', 198295559), ('chr4', 190214555), ('chr5', 181538259), ('chr6', 170805979), ('chr7', 159345973), ('chr8', 145138636), ('chr9', 138394717), ('chrM', 16569), ('chrX', 156040895), ('chrY', 57227415)] INFO:2026-07-10 15:08:31,890:[predict.py:801 - predict() ] min max median INFO:2026-07-10 15:08:31,890:[predict.py:806 - predict() ] mnll 0.000 0.724 0.038 INFO:2026-07-10 15:08:31,891:[predict.py:811 - predict() ] cross_entropy 0.000 0.724 0.038 INFO:2026-07-10 15:08:31,891:[predict.py:816 - predict() ] jsd 0.000 0.645 0.342 INFO:2026-07-10 15:08:31,892:[predict.py:821 - predict() ] spearman -0.557 0.928 0.351 INFO:2026-07-10 15:08:31,892:[predict.py:826 - predict() ] pearson -0.739 0.795 0.426 INFO:2026-07-10 15:08:31,893:[predict.py:831 - predict() ] mse 0.054 7.303 0.201 INFO:2026-07-10 15:08:31,893:[predict.py:833 - predict() ] ============================================== INFO:2026-07-10 15:08:32,061:[predict.py:848 - predict() ] counts pearson: [0.16061972 0.11170046] INFO:2026-07-10 15:08:32,061:[predict.py:849 - predict() ] counts spearman: [0.27207055 0.30323217]