INFO:2026-07-09 23:28:16,321:[predict.py:399 - predict() ] SEQGEN Class Name: MBPNetSequenceGenerator INFO:2026-07-09 23:28:16,332:[generators.py:483 - _pad_samples() ] mode 'test': Data size (after padding 88 samples) - 128 INFO:2026-07-09 23:28:16,335:[predict.py:460 - predict() ] Writing predictions to predictions/RUNX1_Kasumi-1_ChIPSeq/fold_2/model_split000_predictions.h5 DEBUG:2026-07-09 23:28:16,347:[generators.py:731 - _epoch_run() ] test spawning process 0, df size (64, 3) sum(num_batches) 1 DEBUG:2026-07-09 23:28:16,373:[generators.py:731 - _epoch_run() ] test spawning process 1, df size (64, 3) sum(num_batches) 2 DEBUG:2026-07-09 23:28:16,396:[generators.py:757 - _epoch_run() ] test num_batches list [1, 1] DEBUG:2026-07-09 23:28:16,396:[generators.py:770 - _epoch_run() ] test starting stealer thread 0 [1] DEBUG:2026-07-09 23:28:16,397:[generators.py:770 - _epoch_run() ] test starting stealer thread 1 [1] DEBUG:2026-07-09 23:28:16,604:[generators.py:652 - _proc_target() ] test process 0 put 1 batches into mpq DEBUG:2026-07-09 23:28:16,615:[generators.py:652 - _proc_target() ] test process 1 put 1 batches into mpq DEBUG:2026-07-09 23:28:16,630:[generators.py:676 - _stealer() ] test stealer thread 0 got 1 batches from mpq DEBUG:2026-07-09 23:28:16,658:[generators.py:676 - _stealer() ] test stealer thread 1 got 1 batches from mpq DEBUG:2026-07-09 23:28:37,709:[generators.py:814 - gen() ] test waiting to join process 0 DEBUG:2026-07-09 23:28:37,710:[generators.py:819 - gen() ] test waiting to join thread 0 DEBUG:2026-07-09 23:28:37,710:[generators.py:823 - gen() ] test join complete for process 0 DEBUG:2026-07-09 23:28:37,710:[generators.py:814 - gen() ] test waiting to join process 1 DEBUG:2026-07-09 23:28:37,710:[generators.py:819 - gen() ] test waiting to join thread 1 DEBUG:2026-07-09 23:28:37,710:[generators.py:823 - gen() ] test join complete for process 1 DEBUG:2026-07-09 23:28:37,710:[generators.py:826 - gen() ] test Finished join for epoch DEBUG:2026-07-09 23:28:37,710:[generators.py:828 - gen() ] test Ready for next epoch INFO:2026-07-09 23:28:37,710:[predict.py:731 - predict() ] Writing to h5 file ... INFO:2026-07-09 23:28:37,729:[predict.py:747 - predict() ] Elapsed Time: 21.392552375793457 secs INFO:2026-07-09 23:28:37,729:[predict.py:751 - predict() ] Generating predicted profile bigWigs ... INFO:2026-07-09 23:28:37,729:[predict.py:753 - predict() ] predictions shape - (40, 1000, 2) INFO:2026-07-09 23:28:37,733:[predict.py:775 - predict() ] bigWig HEADER - [('chr1', 248956422), ('chr10', 133797422), ('chr11', 135086622), ('chr12', 133275309), ('chr13', 114364328), ('chr14', 107043718), ('chr15', 101991189), ('chr16', 90338345), ('chr17', 83257441), ('chr18', 80373285), ('chr19', 58617616), ('chr2', 242193529), ('chr20', 64444167), ('chr21', 46709983), ('chr22', 50818468), ('chr3', 198295559), ('chr4', 190214555), ('chr5', 181538259), ('chr6', 170805979), ('chr7', 159345973), ('chr8', 145138636), ('chr9', 138394717), ('chrM', 16569), ('chrX', 156040895), ('chrY', 57227415)] INFO:2026-07-09 23:28:37,837:[predict.py:801 - predict() ] min max median INFO:2026-07-09 23:28:37,837:[predict.py:806 - predict() ] mnll 0.000 0.519 0.070 INFO:2026-07-09 23:28:37,837:[predict.py:811 - predict() ] cross_entropy 0.000 0.519 0.070 INFO:2026-07-09 23:28:37,837:[predict.py:816 - predict() ] jsd 0.079 0.561 0.313 INFO:2026-07-09 23:28:37,837:[predict.py:821 - predict() ] spearman -0.525 0.879 0.347 INFO:2026-07-09 23:28:37,837:[predict.py:826 - predict() ] pearson -0.689 0.794 0.394 INFO:2026-07-09 23:28:37,837:[predict.py:831 - predict() ] mse 0.049 7.308 0.176 INFO:2026-07-09 23:28:37,837:[predict.py:833 - predict() ] ============================================== INFO:2026-07-09 23:28:37,845:[predict.py:848 - predict() ] counts pearson: [0.14452352 0.12503837] INFO:2026-07-09 23:28:37,845:[predict.py:849 - predict() ] counts spearman: [0.24692748 0.27724352] INFO:2026-07-10 15:03:11,213:[predict.py:399 - predict() ] SEQGEN Class Name: MBPNetSequenceGenerator INFO:2026-07-10 15:03:11,231:[generators.py:483 - _pad_samples() ] mode 'test': Data size (after padding 88 samples) - 128 INFO:2026-07-10 15:03:11,268:[predict.py:460 - predict() ] Writing predictions to predictions/RUNX1_Kasumi-1_ChIPSeq/fold_2/model_split000_predictions.h5 DEBUG:2026-07-10 15:03:11,353:[generators.py:731 - _epoch_run() ] test spawning process 0, df size (64, 3) sum(num_batches) 1 DEBUG:2026-07-10 15:03:11,389:[generators.py:731 - _epoch_run() ] test spawning process 1, df size (64, 3) sum(num_batches) 2 DEBUG:2026-07-10 15:03:11,431:[generators.py:757 - _epoch_run() ] test num_batches list [1, 1] DEBUG:2026-07-10 15:03:11,431:[generators.py:770 - _epoch_run() ] test starting stealer thread 0 [1] DEBUG:2026-07-10 15:03:11,439:[generators.py:770 - _epoch_run() ] test starting stealer thread 1 [1] DEBUG:2026-07-10 15:03:11,793:[generators.py:652 - _proc_target() ] test process 0 put 1 batches into mpq DEBUG:2026-07-10 15:03:11,822:[generators.py:676 - _stealer() ] test stealer thread 0 got 1 batches from mpq DEBUG:2026-07-10 15:03:11,876:[generators.py:652 - _proc_target() ] test process 1 put 1 batches into mpq DEBUG:2026-07-10 15:03:11,910:[generators.py:676 - _stealer() ] test stealer thread 1 got 1 batches from mpq DEBUG:2026-07-10 15:03:34,149:[generators.py:814 - gen() ] test waiting to join process 0 DEBUG:2026-07-10 15:03:34,149:[generators.py:819 - gen() ] test waiting to join thread 0 DEBUG:2026-07-10 15:03:34,149:[generators.py:823 - gen() ] test join complete for process 0 DEBUG:2026-07-10 15:03:34,149:[generators.py:814 - gen() ] test waiting to join process 1 DEBUG:2026-07-10 15:03:34,149:[generators.py:819 - gen() ] test waiting to join thread 1 DEBUG:2026-07-10 15:03:34,149:[generators.py:823 - gen() ] test join complete for process 1 DEBUG:2026-07-10 15:03:34,149:[generators.py:826 - gen() ] test Finished join for epoch DEBUG:2026-07-10 15:03:34,149:[generators.py:828 - gen() ] test Ready for next epoch INFO:2026-07-10 15:03:34,149:[predict.py:731 - predict() ] Writing to h5 file ... INFO:2026-07-10 15:03:34,173:[predict.py:747 - predict() ] Elapsed Time: 22.903255939483643 secs INFO:2026-07-10 15:03:34,173:[predict.py:751 - predict() ] Generating predicted profile bigWigs ... INFO:2026-07-10 15:03:34,173:[predict.py:753 - predict() ] predictions shape - (40, 1000, 2) INFO:2026-07-10 15:03:34,176:[predict.py:775 - predict() ] bigWig HEADER - [('chr1', 248956422), ('chr10', 133797422), ('chr11', 135086622), ('chr12', 133275309), ('chr13', 114364328), ('chr14', 107043718), ('chr15', 101991189), ('chr16', 90338345), ('chr17', 83257441), ('chr18', 80373285), ('chr19', 58617616), ('chr2', 242193529), ('chr20', 64444167), ('chr21', 46709983), ('chr22', 50818468), ('chr3', 198295559), ('chr4', 190214555), ('chr5', 181538259), ('chr6', 170805979), ('chr7', 159345973), ('chr8', 145138636), ('chr9', 138394717), ('chrM', 16569), ('chrX', 156040895), ('chrY', 57227415)] INFO:2026-07-10 15:03:34,361:[predict.py:801 - predict() ] min max median INFO:2026-07-10 15:03:34,361:[predict.py:806 - predict() ] mnll 0.000 0.350 0.049 INFO:2026-07-10 15:03:34,361:[predict.py:811 - predict() ] cross_entropy 0.000 0.350 0.049 INFO:2026-07-10 15:03:34,361:[predict.py:816 - predict() ] jsd 0.076 0.530 0.318 INFO:2026-07-10 15:03:34,361:[predict.py:821 - predict() ] spearman -0.488 0.810 0.333 INFO:2026-07-10 15:03:34,361:[predict.py:826 - predict() ] pearson -0.549 0.763 0.360 INFO:2026-07-10 15:03:34,361:[predict.py:831 - predict() ] mse 0.051 7.178 0.199 INFO:2026-07-10 15:03:34,362:[predict.py:833 - predict() ] ============================================== INFO:2026-07-10 15:03:34,423:[predict.py:848 - predict() ] counts pearson: [0.10925543 0.09610119] INFO:2026-07-10 15:03:34,423:[predict.py:849 - predict() ] counts spearman: [0.22731964 0.25472628]