INFO:2026-07-09 23:24:53,891:[predict.py:399 - predict() ] SEQGEN Class Name: MBPNetSequenceGenerator INFO:2026-07-09 23:24:53,902:[generators.py:483 - _pad_samples() ] mode 'test': Data size (after padding 88 samples) - 128 INFO:2026-07-09 23:24:53,905:[predict.py:460 - predict() ] Writing predictions to predictions/RUNX1_Kasumi-1_ChIPSeq/fold_1/model_split000_predictions.h5 DEBUG:2026-07-09 23:24:53,916:[generators.py:731 - _epoch_run() ] test spawning process 0, df size (64, 3) sum(num_batches) 1 DEBUG:2026-07-09 23:24:53,942:[generators.py:731 - _epoch_run() ] test spawning process 1, df size (64, 3) sum(num_batches) 2 DEBUG:2026-07-09 23:24:53,965:[generators.py:757 - _epoch_run() ] test num_batches list [1, 1] DEBUG:2026-07-09 23:24:53,965:[generators.py:770 - _epoch_run() ] test starting stealer thread 0 [1] DEBUG:2026-07-09 23:24:53,976:[generators.py:770 - _epoch_run() ] test starting stealer thread 1 [1] DEBUG:2026-07-09 23:24:54,224:[generators.py:652 - _proc_target() ] test process 0 put 1 batches into mpq DEBUG:2026-07-09 23:24:54,230:[generators.py:652 - _proc_target() ] test process 1 put 1 batches into mpq DEBUG:2026-07-09 23:24:54,251:[generators.py:676 - _stealer() ] test stealer thread 0 got 1 batches from mpq DEBUG:2026-07-09 23:24:54,279:[generators.py:676 - _stealer() ] test stealer thread 1 got 1 batches from mpq DEBUG:2026-07-09 23:25:16,079:[generators.py:814 - gen() ] test waiting to join process 0 DEBUG:2026-07-09 23:25:16,080:[generators.py:819 - gen() ] test waiting to join thread 0 DEBUG:2026-07-09 23:25:16,080:[generators.py:823 - gen() ] test join complete for process 0 DEBUG:2026-07-09 23:25:16,080:[generators.py:814 - gen() ] test waiting to join process 1 DEBUG:2026-07-09 23:25:16,080:[generators.py:819 - gen() ] test waiting to join thread 1 DEBUG:2026-07-09 23:25:16,080:[generators.py:823 - gen() ] test join complete for process 1 DEBUG:2026-07-09 23:25:16,080:[generators.py:826 - gen() ] test Finished join for epoch DEBUG:2026-07-09 23:25:16,080:[generators.py:828 - gen() ] test Ready for next epoch INFO:2026-07-09 23:25:16,080:[predict.py:731 - predict() ] Writing to h5 file ... INFO:2026-07-09 23:25:16,099:[predict.py:747 - predict() ] Elapsed Time: 22.192570209503174 secs INFO:2026-07-09 23:25:16,099:[predict.py:751 - predict() ] Generating predicted profile bigWigs ... INFO:2026-07-09 23:25:16,099:[predict.py:753 - predict() ] predictions shape - (40, 1000, 2) INFO:2026-07-09 23:25:16,102:[predict.py:775 - predict() ] bigWig HEADER - [('chr1', 248956422), ('chr10', 133797422), ('chr11', 135086622), ('chr12', 133275309), ('chr13', 114364328), ('chr14', 107043718), ('chr15', 101991189), ('chr16', 90338345), ('chr17', 83257441), ('chr18', 80373285), ('chr19', 58617616), ('chr2', 242193529), ('chr20', 64444167), ('chr21', 46709983), ('chr22', 50818468), ('chr3', 198295559), ('chr4', 190214555), ('chr5', 181538259), ('chr6', 170805979), ('chr7', 159345973), ('chr8', 145138636), ('chr9', 138394717), ('chrM', 16569), ('chrX', 156040895), ('chrY', 57227415)] INFO:2026-07-09 23:25:16,207:[predict.py:801 - predict() ] min max median INFO:2026-07-09 23:25:16,207:[predict.py:806 - predict() ] mnll 0.000 0.513 0.041 INFO:2026-07-09 23:25:16,207:[predict.py:811 - predict() ] cross_entropy 0.000 0.513 0.041 INFO:2026-07-09 23:25:16,207:[predict.py:816 - predict() ] jsd 0.069 0.557 0.331 INFO:2026-07-09 23:25:16,207:[predict.py:821 - predict() ] spearman -0.543 0.815 0.346 INFO:2026-07-09 23:25:16,207:[predict.py:826 - predict() ] pearson -0.646 0.848 0.364 INFO:2026-07-09 23:25:16,208:[predict.py:831 - predict() ] mse 0.047 7.531 0.157 INFO:2026-07-09 23:25:16,208:[predict.py:833 - predict() ] ============================================== INFO:2026-07-09 23:25:16,215:[predict.py:848 - predict() ] counts pearson: [0.27809524 0.23575407] INFO:2026-07-09 23:25:16,215:[predict.py:849 - predict() ] counts spearman: [0.35322263 0.32377915] INFO:2026-07-10 15:03:17,013:[predict.py:399 - predict() ] SEQGEN Class Name: MBPNetSequenceGenerator INFO:2026-07-10 15:03:17,039:[generators.py:483 - _pad_samples() ] mode 'test': Data size (after padding 88 samples) - 128 INFO:2026-07-10 15:03:17,042:[predict.py:460 - predict() ] Writing predictions to predictions/RUNX1_Kasumi-1_ChIPSeq/fold_1/model_split000_predictions.h5 DEBUG:2026-07-10 15:03:17,110:[generators.py:731 - _epoch_run() ] test spawning process 0, df size (64, 3) sum(num_batches) 1 DEBUG:2026-07-10 15:03:17,178:[generators.py:731 - _epoch_run() ] test spawning process 1, df size (64, 3) sum(num_batches) 2 DEBUG:2026-07-10 15:03:17,267:[generators.py:757 - _epoch_run() ] test num_batches list [1, 1] DEBUG:2026-07-10 15:03:17,268:[generators.py:770 - _epoch_run() ] test starting stealer thread 0 [1] DEBUG:2026-07-10 15:03:17,280:[generators.py:770 - _epoch_run() ] test starting stealer thread 1 [1] DEBUG:2026-07-10 15:03:17,623:[generators.py:652 - _proc_target() ] test process 0 put 1 batches into mpq DEBUG:2026-07-10 15:03:17,660:[generators.py:676 - _stealer() ] test stealer thread 0 got 1 batches from mpq DEBUG:2026-07-10 15:03:17,719:[generators.py:652 - _proc_target() ] test process 1 put 1 batches into mpq DEBUG:2026-07-10 15:03:17,783:[generators.py:676 - _stealer() ] test stealer thread 1 got 1 batches from mpq DEBUG:2026-07-10 15:12:13,586:[generators.py:814 - gen() ] test waiting to join process 0 DEBUG:2026-07-10 15:12:13,586:[generators.py:819 - gen() ] test waiting to join thread 0 DEBUG:2026-07-10 15:12:13,586:[generators.py:823 - gen() ] test join complete for process 0 DEBUG:2026-07-10 15:12:13,586:[generators.py:814 - gen() ] test waiting to join process 1 DEBUG:2026-07-10 15:12:13,586:[generators.py:819 - gen() ] test waiting to join thread 1 DEBUG:2026-07-10 15:12:13,586:[generators.py:823 - gen() ] test join complete for process 1 DEBUG:2026-07-10 15:12:13,586:[generators.py:826 - gen() ] test Finished join for epoch DEBUG:2026-07-10 15:12:13,586:[generators.py:828 - gen() ] test Ready for next epoch INFO:2026-07-10 15:12:13,586:[predict.py:731 - predict() ] Writing to h5 file ... INFO:2026-07-10 15:12:13,605:[predict.py:747 - predict() ] Elapsed Time: 536.5609216690063 secs INFO:2026-07-10 15:12:13,605:[predict.py:751 - predict() ] Generating predicted profile bigWigs ... INFO:2026-07-10 15:12:13,605:[predict.py:753 - predict() ] predictions shape - (40, 1000, 2) INFO:2026-07-10 15:12:13,608:[predict.py:775 - predict() ] bigWig HEADER - [('chr1', 248956422), ('chr10', 133797422), ('chr11', 135086622), ('chr12', 133275309), ('chr13', 114364328), ('chr14', 107043718), ('chr15', 101991189), ('chr16', 90338345), ('chr17', 83257441), ('chr18', 80373285), ('chr19', 58617616), ('chr2', 242193529), ('chr20', 64444167), ('chr21', 46709983), ('chr22', 50818468), ('chr3', 198295559), ('chr4', 190214555), ('chr5', 181538259), ('chr6', 170805979), ('chr7', 159345973), ('chr8', 145138636), ('chr9', 138394717), ('chrM', 16569), ('chrX', 156040895), ('chrY', 57227415)] INFO:2026-07-10 15:12:13,721:[predict.py:801 - predict() ] min max median INFO:2026-07-10 15:12:13,721:[predict.py:806 - predict() ] mnll 0.000 0.472 0.052 INFO:2026-07-10 15:12:13,721:[predict.py:811 - predict() ] cross_entropy 0.000 0.472 0.052 INFO:2026-07-10 15:12:13,721:[predict.py:816 - predict() ] jsd 0.049 0.526 0.311 INFO:2026-07-10 15:12:13,721:[predict.py:821 - predict() ] spearman -0.498 0.752 0.258 INFO:2026-07-10 15:12:13,721:[predict.py:826 - predict() ] pearson -0.637 0.850 0.326 INFO:2026-07-10 15:12:13,721:[predict.py:831 - predict() ] mse 0.048 7.597 0.159 INFO:2026-07-10 15:12:13,721:[predict.py:833 - predict() ] ============================================== INFO:2026-07-10 15:12:13,842:[predict.py:848 - predict() ] counts pearson: [0.3308781 0.3048946] INFO:2026-07-10 15:12:13,842:[predict.py:849 - predict() ] counts spearman: [0.43296745 0.41225314]