INFO:2026-08-05 14:43:09,905:[predict.py:399 - predict() ] SEQGEN Class Name: MBPNetSequenceGenerator INFO:2026-08-05 14:43:09,916:[generators.py:483 - _pad_samples() ] mode 'test': Data size (after padding 121 samples) - 128 INFO:2026-08-05 14:43:09,939:[predict.py:460 - predict() ] Writing predictions to predictions/RUNX1_5Dox/fold_3/model_split000_predictions.h5 DEBUG:2026-08-05 14:43:09,948:[generators.py:731 - _epoch_run() ] test spawning process 0, df size (64, 3) sum(num_batches) 1 DEBUG:2026-08-05 14:43:09,973:[generators.py:731 - _epoch_run() ] test spawning process 1, df size (64, 3) sum(num_batches) 2 DEBUG:2026-08-05 14:43:09,995:[generators.py:757 - _epoch_run() ] test num_batches list [1, 1] DEBUG:2026-08-05 14:43:09,995:[generators.py:770 - _epoch_run() ] test starting stealer thread 0 [1] DEBUG:2026-08-05 14:43:09,996:[generators.py:770 - _epoch_run() ] test starting stealer thread 1 [1] DEBUG:2026-08-05 14:43:10,133:[generators.py:652 - _proc_target() ] test process 0 put 1 batches into mpq DEBUG:2026-08-05 14:43:10,151:[generators.py:652 - _proc_target() ] test process 1 put 1 batches into mpq DEBUG:2026-08-05 14:43:10,158:[generators.py:676 - _stealer() ] test stealer thread 0 got 1 batches from mpq DEBUG:2026-08-05 14:43:10,202:[generators.py:676 - _stealer() ] test stealer thread 1 got 1 batches from mpq DEBUG:2026-08-05 14:43:30,266:[generators.py:814 - gen() ] test waiting to join process 0 DEBUG:2026-08-05 14:43:30,266:[generators.py:819 - gen() ] test waiting to join thread 0 DEBUG:2026-08-05 14:43:30,266:[generators.py:823 - gen() ] test join complete for process 0 DEBUG:2026-08-05 14:43:30,266:[generators.py:814 - gen() ] test waiting to join process 1 DEBUG:2026-08-05 14:43:30,266:[generators.py:819 - gen() ] test waiting to join thread 1 DEBUG:2026-08-05 14:43:30,266:[generators.py:823 - gen() ] test join complete for process 1 DEBUG:2026-08-05 14:43:30,266:[generators.py:826 - gen() ] test Finished join for epoch DEBUG:2026-08-05 14:43:30,266:[generators.py:828 - gen() ] test Ready for next epoch INFO:2026-08-05 14:43:30,266:[predict.py:731 - predict() ] Writing to h5 file ... INFO:2026-08-05 14:43:30,273:[predict.py:747 - predict() ] Elapsed Time: 20.33285140991211 secs INFO:2026-08-05 14:43:30,273:[predict.py:751 - predict() ] Generating predicted profile bigWigs ... INFO:2026-08-05 14:43:30,273:[predict.py:753 - predict() ] predictions shape - (7, 1000, 2) INFO:2026-08-05 14:43:30,277:[predict.py:775 - predict() ] bigWig HEADER - [('chr1', 248956422), ('chr10', 133797422), ('chr11', 135086622), ('chr12', 133275309), ('chr13', 114364328), ('chr14', 107043718), ('chr15', 101991189), ('chr16', 90338345), ('chr17', 83257441), ('chr18', 80373285), ('chr19', 58617616), ('chr2', 242193529), ('chr20', 64444167), ('chr21', 46709983), ('chr22', 50818468), ('chr3', 198295559), ('chr4', 190214555), ('chr5', 181538259), ('chr6', 170805979), ('chr7', 159345973), ('chr8', 145138636), ('chr9', 138394717), ('chrM', 16569), ('chrX', 156040895), ('chrY', 57227415)] INFO:2026-08-05 14:43:30,354:[predict.py:801 - predict() ] min max median INFO:2026-08-05 14:43:30,354:[predict.py:806 - predict() ] mnll 0.000 0.000 0.000 INFO:2026-08-05 14:43:30,354:[predict.py:811 - predict() ] cross_entropy 0.000 0.000 0.000 INFO:2026-08-05 14:43:30,354:[predict.py:816 - predict() ] jsd 0.090 0.508 0.407 INFO:2026-08-05 14:43:30,354:[predict.py:821 - predict() ] spearman -0.116 0.080 0.005 INFO:2026-08-05 14:43:30,354:[predict.py:826 - predict() ] pearson -0.099 0.069 -0.021 INFO:2026-08-05 14:43:30,354:[predict.py:831 - predict() ] mse 0.247 3.350 1.020 INFO:2026-08-05 14:43:30,354:[predict.py:833 - predict() ] ============================================== INFO:2026-08-05 14:43:30,411:[predict.py:848 - predict() ] counts pearson: [0.96110045 0.97733048] INFO:2026-08-05 14:43:30,411:[predict.py:849 - predict() ] counts spearman: [0.92857143 0.96428571] INFO:2026-08-06 14:00:48,173:[predict.py:399 - predict() ] SEQGEN Class Name: MBPNetSequenceGenerator INFO:2026-08-06 14:00:48,208:[generators.py:483 - _pad_samples() ] mode 'test': Data size (after padding 12 samples) - 128 INFO:2026-08-06 14:00:48,228:[predict.py:460 - predict() ] Writing predictions to predictions/RUNX1_5Dox/fold_3/model_split000_predictions.h5 DEBUG:2026-08-06 14:00:48,426:[generators.py:731 - _epoch_run() ] test spawning process 0, df size (64, 3) sum(num_batches) 1 DEBUG:2026-08-06 14:00:48,462:[generators.py:731 - _epoch_run() ] test spawning process 1, df size (64, 3) sum(num_batches) 2 DEBUG:2026-08-06 14:00:48,513:[generators.py:757 - _epoch_run() ] test num_batches list [1, 1] DEBUG:2026-08-06 14:00:48,513:[generators.py:770 - _epoch_run() ] test starting stealer thread 0 [1] DEBUG:2026-08-06 14:00:48,522:[generators.py:770 - _epoch_run() ] test starting stealer thread 1 [1] DEBUG:2026-08-06 14:00:49,194:[generators.py:652 - _proc_target() ] test process 1 put 1 batches into mpq DEBUG:2026-08-06 14:00:49,219:[generators.py:652 - _proc_target() ] test process 0 put 1 batches into mpq DEBUG:2026-08-06 14:00:49,246:[generators.py:676 - _stealer() ] test stealer thread 1 got 1 batches from mpq DEBUG:2026-08-06 14:00:49,345:[generators.py:676 - _stealer() ] test stealer thread 0 got 1 batches from mpq DEBUG:2026-08-06 14:01:39,521:[generators.py:814 - gen() ] test waiting to join process 0 DEBUG:2026-08-06 14:01:39,521:[generators.py:819 - gen() ] test waiting to join thread 0 DEBUG:2026-08-06 14:01:39,521:[generators.py:823 - gen() ] test join complete for process 0 DEBUG:2026-08-06 14:01:39,521:[generators.py:814 - gen() ] test waiting to join process 1 DEBUG:2026-08-06 14:01:39,521:[generators.py:819 - gen() ] test waiting to join thread 1 DEBUG:2026-08-06 14:01:39,521:[generators.py:823 - gen() ] test join complete for process 1 DEBUG:2026-08-06 14:01:39,521:[generators.py:826 - gen() ] test Finished join for epoch DEBUG:2026-08-06 14:01:39,522:[generators.py:828 - gen() ] test Ready for next epoch INFO:2026-08-06 14:01:39,522:[predict.py:731 - predict() ] Writing to h5 file ... INFO:2026-08-06 14:01:39,597:[predict.py:747 - predict() ] Elapsed Time: 51.365668296813965 secs INFO:2026-08-06 14:01:39,597:[predict.py:751 - predict() ] Generating predicted profile bigWigs ... INFO:2026-08-06 14:01:39,597:[predict.py:753 - predict() ] predictions shape - (116, 1000, 2) INFO:2026-08-06 14:01:39,602:[predict.py:775 - predict() ] bigWig HEADER - [('chr1', 248956422), ('chr10', 133797422), ('chr11', 135086622), ('chr12', 133275309), ('chr13', 114364328), ('chr14', 107043718), ('chr15', 101991189), ('chr16', 90338345), ('chr17', 83257441), ('chr18', 80373285), ('chr19', 58617616), ('chr2', 242193529), ('chr20', 64444167), ('chr21', 46709983), ('chr22', 50818468), ('chr3', 198295559), ('chr4', 190214555), ('chr5', 181538259), ('chr6', 170805979), ('chr7', 159345973), ('chr8', 145138636), ('chr9', 138394717), ('chrM', 16569), ('chrX', 156040895), ('chrY', 57227415)] INFO:2026-08-06 14:01:40,077:[predict.py:801 - predict() ] min max median INFO:2026-08-06 14:01:40,077:[predict.py:806 - predict() ] mnll 0.000 0.204 0.002 INFO:2026-08-06 14:01:40,077:[predict.py:811 - predict() ] cross_entropy 0.000 0.204 0.002 INFO:2026-08-06 14:01:40,078:[predict.py:816 - predict() ] jsd 0.077 0.765 0.432 INFO:2026-08-06 14:01:40,078:[predict.py:821 - predict() ] spearman -0.349 0.657 0.082 INFO:2026-08-06 14:01:40,078:[predict.py:826 - predict() ] pearson -0.425 0.733 0.078 INFO:2026-08-06 14:01:40,078:[predict.py:831 - predict() ] mse 0.020 3.370 0.479 INFO:2026-08-06 14:01:40,078:[predict.py:833 - predict() ] ============================================== INFO:2026-08-06 14:01:40,223:[predict.py:848 - predict() ] counts pearson: [0.89115465 0.88422146] INFO:2026-08-06 14:01:40,223:[predict.py:849 - predict() ] counts spearman: [0.86895279 0.86667577]