INFO:2026-08-05 14:48:50,625:[predict.py:399 - predict() ] SEQGEN Class Name: MBPNetSequenceGenerator INFO:2026-08-05 14:48:50,636:[generators.py:483 - _pad_samples() ] mode 'test': Data size (after padding 113 samples) - 256 INFO:2026-08-05 14:48:50,639:[predict.py:460 - predict() ] Writing predictions to predictions/RUNX1_0Dox/fold_4/model_split000_predictions.h5 DEBUG:2026-08-05 14:48:50,651:[generators.py:731 - _epoch_run() ] test spawning process 0, df size (128, 3) sum(num_batches) 2 DEBUG:2026-08-05 14:48:50,679:[generators.py:731 - _epoch_run() ] test spawning process 1, df size (128, 3) sum(num_batches) 4 DEBUG:2026-08-05 14:48:50,704:[generators.py:757 - _epoch_run() ] test num_batches list [2, 2] DEBUG:2026-08-05 14:48:50,704:[generators.py:770 - _epoch_run() ] test starting stealer thread 0 [2] DEBUG:2026-08-05 14:48:50,704:[generators.py:770 - _epoch_run() ] test starting stealer thread 1 [2] DEBUG:2026-08-05 14:48:51,843:[generators.py:652 - _proc_target() ] test process 0 put 2 batches into mpq DEBUG:2026-08-05 14:48:51,856:[generators.py:676 - _stealer() ] test stealer thread 0 got 2 batches from mpq DEBUG:2026-08-05 14:48:51,912:[generators.py:676 - _stealer() ] test stealer thread 1 got 2 batches from mpq DEBUG:2026-08-05 14:48:51,898:[generators.py:652 - _proc_target() ] test process 1 put 2 batches into mpq DEBUG:2026-08-05 14:49:14,555:[generators.py:814 - gen() ] test waiting to join process 0 DEBUG:2026-08-05 14:49:14,555:[generators.py:819 - gen() ] test waiting to join thread 0 DEBUG:2026-08-05 14:49:14,555:[generators.py:823 - gen() ] test join complete for process 0 DEBUG:2026-08-05 14:49:14,555:[generators.py:814 - gen() ] test waiting to join process 1 DEBUG:2026-08-05 14:49:14,555:[generators.py:819 - gen() ] test waiting to join thread 1 DEBUG:2026-08-05 14:49:14,555:[generators.py:823 - gen() ] test join complete for process 1 DEBUG:2026-08-05 14:49:14,555:[generators.py:826 - gen() ] test Finished join for epoch DEBUG:2026-08-05 14:49:14,555:[generators.py:828 - gen() ] test Ready for next epoch INFO:2026-08-05 14:49:14,556:[predict.py:731 - predict() ] Writing to h5 file ... INFO:2026-08-05 14:49:14,626:[predict.py:747 - predict() ] Elapsed Time: 23.98520588874817 secs INFO:2026-08-05 14:49:14,626:[predict.py:751 - predict() ] Generating predicted profile bigWigs ... INFO:2026-08-05 14:49:14,626:[predict.py:753 - predict() ] predictions shape - (143, 1000, 2) INFO:2026-08-05 14:49:14,630:[predict.py:775 - predict() ] bigWig HEADER - [('chr1', 248956422), ('chr10', 133797422), ('chr11', 135086622), ('chr12', 133275309), ('chr13', 114364328), ('chr14', 107043718), ('chr15', 101991189), ('chr16', 90338345), ('chr17', 83257441), ('chr18', 80373285), ('chr19', 58617616), ('chr2', 242193529), ('chr20', 64444167), ('chr21', 46709983), ('chr22', 50818468), ('chr3', 198295559), ('chr4', 190214555), ('chr5', 181538259), ('chr6', 170805979), ('chr7', 159345973), ('chr8', 145138636), ('chr9', 138394717), ('chrM', 16569), ('chrX', 156040895), ('chrY', 57227415)] INFO:2026-08-05 14:49:15,018:[predict.py:801 - predict() ] min max median INFO:2026-08-05 14:49:15,018:[predict.py:806 - predict() ] mnll 0.000 0.505 0.118 INFO:2026-08-05 14:49:15,018:[predict.py:811 - predict() ] cross_entropy 0.000 0.505 0.118 INFO:2026-08-05 14:49:15,018:[predict.py:816 - predict() ] jsd 0.058 0.724 0.488 INFO:2026-08-05 14:49:15,018:[predict.py:821 - predict() ] spearman -0.475 0.916 0.564 INFO:2026-08-05 14:49:15,018:[predict.py:826 - predict() ] pearson -0.614 0.887 0.559 INFO:2026-08-05 14:49:15,018:[predict.py:831 - predict() ] mse 0.047 10.158 0.158 INFO:2026-08-05 14:49:15,018:[predict.py:833 - predict() ] ============================================== INFO:2026-08-05 14:49:15,047:[predict.py:848 - predict() ] counts pearson: [0.78563186 0.69131761] INFO:2026-08-05 14:49:15,048:[predict.py:849 - predict() ] counts spearman: [0.6817833 0.64028598] INFO:2026-08-06 13:58:35,792:[predict.py:399 - predict() ] SEQGEN Class Name: MBPNetSequenceGenerator INFO:2026-08-06 13:58:35,821:[generators.py:483 - _pad_samples() ] mode 'test': Data size (after padding 6 samples) - 1280 INFO:2026-08-06 13:58:35,875:[predict.py:460 - predict() ] Writing predictions to predictions/RUNX1_0Dox/fold_4/model_split000_predictions.h5 DEBUG:2026-08-06 13:58:35,986:[generators.py:731 - _epoch_run() ] test spawning process 0, df size (640, 3) sum(num_batches) 10 DEBUG:2026-08-06 13:58:36,021:[generators.py:731 - _epoch_run() ] test spawning process 1, df size (640, 3) sum(num_batches) 20 DEBUG:2026-08-06 13:58:36,045:[generators.py:757 - _epoch_run() ] test num_batches list [10, 10] DEBUG:2026-08-06 13:58:36,045:[generators.py:770 - _epoch_run() ] test starting stealer thread 0 [10] DEBUG:2026-08-06 13:58:36,045:[generators.py:770 - _epoch_run() ] test starting stealer thread 1 [10] DEBUG:2026-08-06 13:58:38,589:[generators.py:652 - _proc_target() ] test process 0 put 10 batches into mpq DEBUG:2026-08-06 13:58:38,603:[generators.py:676 - _stealer() ] test stealer thread 0 got 10 batches from mpq DEBUG:2026-08-06 13:58:39,181:[generators.py:652 - _proc_target() ] test process 1 put 10 batches into mpq DEBUG:2026-08-06 13:58:39,254:[generators.py:676 - _stealer() ] test stealer thread 1 got 10 batches from mpq DEBUG:2026-08-06 13:59:11,801:[generators.py:814 - gen() ] test waiting to join process 0 DEBUG:2026-08-06 13:59:11,801:[generators.py:819 - gen() ] test waiting to join thread 0 DEBUG:2026-08-06 13:59:11,801:[generators.py:823 - gen() ] test join complete for process 0 DEBUG:2026-08-06 13:59:11,801:[generators.py:814 - gen() ] test waiting to join process 1 DEBUG:2026-08-06 13:59:11,801:[generators.py:819 - gen() ] test waiting to join thread 1 DEBUG:2026-08-06 13:59:11,801:[generators.py:823 - gen() ] test join complete for process 1 DEBUG:2026-08-06 13:59:11,801:[generators.py:826 - gen() ] test Finished join for epoch DEBUG:2026-08-06 13:59:11,801:[generators.py:828 - gen() ] test Ready for next epoch INFO:2026-08-06 13:59:11,802:[predict.py:731 - predict() ] Writing to h5 file ... INFO:2026-08-06 13:59:12,341:[predict.py:747 - predict() ] Elapsed Time: 36.462674617767334 secs INFO:2026-08-06 13:59:12,341:[predict.py:751 - predict() ] Generating predicted profile bigWigs ... INFO:2026-08-06 13:59:12,341:[predict.py:753 - predict() ] predictions shape - (1274, 1000, 2) INFO:2026-08-06 13:59:12,344:[predict.py:775 - predict() ] bigWig HEADER - [('chr1', 248956422), ('chr10', 133797422), ('chr11', 135086622), ('chr12', 133275309), ('chr13', 114364328), ('chr14', 107043718), ('chr15', 101991189), ('chr16', 90338345), ('chr17', 83257441), ('chr18', 80373285), ('chr19', 58617616), ('chr2', 242193529), ('chr20', 64444167), ('chr21', 46709983), ('chr22', 50818468), ('chr3', 198295559), ('chr4', 190214555), ('chr5', 181538259), ('chr6', 170805979), ('chr7', 159345973), ('chr8', 145138636), ('chr9', 138394717), ('chrM', 16569), ('chrX', 156040895), ('chrY', 57227415)] INFO:2026-08-06 13:59:15,636:[predict.py:801 - predict() ] min max median INFO:2026-08-06 13:59:15,637:[predict.py:806 - predict() ] mnll 0.000 0.271 0.031 INFO:2026-08-06 13:59:15,637:[predict.py:811 - predict() ] cross_entropy 0.000 0.271 0.031 INFO:2026-08-06 13:59:15,637:[predict.py:816 - predict() ] jsd 0.000 0.700 0.455 INFO:2026-08-06 13:59:15,637:[predict.py:821 - predict() ] spearman -0.621 0.812 0.296 INFO:2026-08-06 13:59:15,637:[predict.py:826 - predict() ] pearson -0.748 0.852 0.350 INFO:2026-08-06 13:59:15,637:[predict.py:831 - predict() ] mse 0.009 13.207 0.084 INFO:2026-08-06 13:59:15,637:[predict.py:833 - predict() ] ============================================== INFO:2026-08-06 13:59:15,775:[predict.py:848 - predict() ] counts pearson: [0.55684752 0.56313551] INFO:2026-08-06 13:59:15,776:[predict.py:849 - predict() ] counts spearman: [0.49116995 0.4972097 ]