INFO:2026-08-05 14:44:53,439:[predict.py:399 - predict() ] SEQGEN Class Name: MBPNetSequenceGenerator INFO:2026-08-05 14:44:53,451:[generators.py:483 - _pad_samples() ] mode 'test': Data size (after padding 113 samples) - 256 INFO:2026-08-05 14:44:53,471:[predict.py:460 - predict() ] Writing predictions to predictions/RUNX1_0Dox/fold_3/model_split000_predictions.h5 DEBUG:2026-08-05 14:44:53,501:[generators.py:731 - _epoch_run() ] test spawning process 0, df size (128, 3) sum(num_batches) 2 DEBUG:2026-08-05 14:44:53,533:[generators.py:731 - _epoch_run() ] test spawning process 1, df size (128, 3) sum(num_batches) 4 DEBUG:2026-08-05 14:44:53,557:[generators.py:757 - _epoch_run() ] test num_batches list [2, 2] DEBUG:2026-08-05 14:44:53,557:[generators.py:770 - _epoch_run() ] test starting stealer thread 0 [2] DEBUG:2026-08-05 14:44:53,558:[generators.py:770 - _epoch_run() ] test starting stealer thread 1 [2] DEBUG:2026-08-05 14:44:54,327:[generators.py:652 - _proc_target() ] test process 1 put 2 batches into mpq DEBUG:2026-08-05 14:44:54,340:[generators.py:676 - _stealer() ] test stealer thread 1 got 2 batches from mpq DEBUG:2026-08-05 14:44:54,420:[generators.py:676 - _stealer() ] test stealer thread 0 got 2 batches from mpq DEBUG:2026-08-05 14:44:54,407:[generators.py:652 - _proc_target() ] test process 0 put 2 batches into mpq DEBUG:2026-08-05 14:45:17,385:[generators.py:814 - gen() ] test waiting to join process 0 DEBUG:2026-08-05 14:45:17,385:[generators.py:819 - gen() ] test waiting to join thread 0 DEBUG:2026-08-05 14:45:17,385:[generators.py:823 - gen() ] test join complete for process 0 DEBUG:2026-08-05 14:45:17,385:[generators.py:814 - gen() ] test waiting to join process 1 DEBUG:2026-08-05 14:45:17,385:[generators.py:819 - gen() ] test waiting to join thread 1 DEBUG:2026-08-05 14:45:17,385:[generators.py:823 - gen() ] test join complete for process 1 DEBUG:2026-08-05 14:45:17,385:[generators.py:826 - gen() ] test Finished join for epoch DEBUG:2026-08-05 14:45:17,385:[generators.py:828 - gen() ] test Ready for next epoch INFO:2026-08-05 14:45:17,385:[predict.py:731 - predict() ] Writing to h5 file ... INFO:2026-08-05 14:45:17,445:[predict.py:747 - predict() ] Elapsed Time: 23.97171139717102 secs INFO:2026-08-05 14:45:17,445:[predict.py:751 - predict() ] Generating predicted profile bigWigs ... INFO:2026-08-05 14:45:17,445:[predict.py:753 - predict() ] predictions shape - (143, 1000, 2) INFO:2026-08-05 14:45:17,449:[predict.py:775 - predict() ] bigWig HEADER - [('chr1', 248956422), ('chr10', 133797422), ('chr11', 135086622), ('chr12', 133275309), ('chr13', 114364328), ('chr14', 107043718), ('chr15', 101991189), ('chr16', 90338345), ('chr17', 83257441), ('chr18', 80373285), ('chr19', 58617616), ('chr2', 242193529), ('chr20', 64444167), ('chr21', 46709983), ('chr22', 50818468), ('chr3', 198295559), ('chr4', 190214555), ('chr5', 181538259), ('chr6', 170805979), ('chr7', 159345973), ('chr8', 145138636), ('chr9', 138394717), ('chrM', 16569), ('chrX', 156040895), ('chrY', 57227415)] INFO:2026-08-05 14:45:17,812:[predict.py:801 - predict() ] min max median INFO:2026-08-05 14:45:17,812:[predict.py:806 - predict() ] mnll 0.000 0.198 0.044 INFO:2026-08-05 14:45:17,813:[predict.py:811 - predict() ] cross_entropy 0.000 0.198 0.044 INFO:2026-08-05 14:45:17,813:[predict.py:816 - predict() ] jsd 0.128 0.646 0.412 INFO:2026-08-05 14:45:17,813:[predict.py:821 - predict() ] spearman -0.385 0.775 0.306 INFO:2026-08-05 14:45:17,813:[predict.py:826 - predict() ] pearson -0.479 0.789 0.343 INFO:2026-08-05 14:45:17,813:[predict.py:831 - predict() ] mse 0.009 11.423 0.164 INFO:2026-08-05 14:45:17,813:[predict.py:833 - predict() ] ============================================== INFO:2026-08-05 14:45:17,863:[predict.py:848 - predict() ] counts pearson: [0.7563621 0.74006327] INFO:2026-08-05 14:45:17,863:[predict.py:849 - predict() ] counts spearman: [0.54263493 0.54693744] INFO:2026-08-06 14:04:37,031:[predict.py:399 - predict() ] SEQGEN Class Name: MBPNetSequenceGenerator INFO:2026-08-06 14:04:37,057:[generators.py:483 - _pad_samples() ] mode 'test': Data size (after padding 6 samples) - 1280 INFO:2026-08-06 14:04:37,101:[predict.py:460 - predict() ] Writing predictions to predictions/RUNX1_0Dox/fold_3/model_split000_predictions.h5 DEBUG:2026-08-06 14:04:37,115:[generators.py:731 - _epoch_run() ] test spawning process 0, df size (640, 3) sum(num_batches) 10 DEBUG:2026-08-06 14:04:37,153:[generators.py:731 - _epoch_run() ] test spawning process 1, df size (640, 3) sum(num_batches) 20 DEBUG:2026-08-06 14:04:37,189:[generators.py:757 - _epoch_run() ] test num_batches list [10, 10] DEBUG:2026-08-06 14:04:37,190:[generators.py:770 - _epoch_run() ] test starting stealer thread 0 [10] DEBUG:2026-08-06 14:04:37,190:[generators.py:770 - _epoch_run() ] test starting stealer thread 1 [10] DEBUG:2026-08-06 14:04:39,579:[generators.py:676 - _stealer() ] test stealer thread 0 got 10 batches from mpq DEBUG:2026-08-06 14:04:39,568:[generators.py:652 - _proc_target() ] test process 0 put 10 batches into mpq DEBUG:2026-08-06 14:04:39,950:[generators.py:652 - _proc_target() ] test process 1 put 10 batches into mpq DEBUG:2026-08-06 14:04:39,960:[generators.py:676 - _stealer() ] test stealer thread 1 got 10 batches from mpq DEBUG:2026-08-06 14:05:18,905:[generators.py:814 - gen() ] test waiting to join process 0 DEBUG:2026-08-06 14:05:18,905:[generators.py:819 - gen() ] test waiting to join thread 0 DEBUG:2026-08-06 14:05:18,905:[generators.py:823 - gen() ] test join complete for process 0 DEBUG:2026-08-06 14:05:18,905:[generators.py:814 - gen() ] test waiting to join process 1 DEBUG:2026-08-06 14:05:18,905:[generators.py:819 - gen() ] test waiting to join thread 1 DEBUG:2026-08-06 14:05:18,905:[generators.py:823 - gen() ] test join complete for process 1 DEBUG:2026-08-06 14:05:18,905:[generators.py:826 - gen() ] test Finished join for epoch DEBUG:2026-08-06 14:05:18,905:[generators.py:828 - gen() ] test Ready for next epoch INFO:2026-08-06 14:05:18,905:[predict.py:731 - predict() ] Writing to h5 file ... INFO:2026-08-06 14:05:19,659:[predict.py:747 - predict() ] Elapsed Time: 42.554214000701904 secs INFO:2026-08-06 14:05:19,660:[predict.py:751 - predict() ] Generating predicted profile bigWigs ... INFO:2026-08-06 14:05:19,660:[predict.py:753 - predict() ] predictions shape - (1274, 1000, 2) INFO:2026-08-06 14:05:19,665:[predict.py:775 - predict() ] bigWig HEADER - [('chr1', 248956422), ('chr10', 133797422), ('chr11', 135086622), ('chr12', 133275309), ('chr13', 114364328), ('chr14', 107043718), ('chr15', 101991189), ('chr16', 90338345), ('chr17', 83257441), ('chr18', 80373285), ('chr19', 58617616), ('chr2', 242193529), ('chr20', 64444167), ('chr21', 46709983), ('chr22', 50818468), ('chr3', 198295559), ('chr4', 190214555), ('chr5', 181538259), ('chr6', 170805979), ('chr7', 159345973), ('chr8', 145138636), ('chr9', 138394717), ('chrM', 16569), ('chrX', 156040895), ('chrY', 57227415)] INFO:2026-08-06 14:05:23,523:[predict.py:801 - predict() ] min max median INFO:2026-08-06 14:05:23,523:[predict.py:806 - predict() ] mnll 0.000 0.240 0.027 INFO:2026-08-06 14:05:23,524:[predict.py:811 - predict() ] cross_entropy 0.000 0.240 0.027 INFO:2026-08-06 14:05:23,524:[predict.py:816 - predict() ] jsd 0.019 0.702 0.449 INFO:2026-08-06 14:05:23,524:[predict.py:821 - predict() ] spearman -0.615 0.805 0.276 INFO:2026-08-06 14:05:23,524:[predict.py:826 - predict() ] pearson -0.742 0.833 0.326 INFO:2026-08-06 14:05:23,524:[predict.py:831 - predict() ] mse 0.008 13.284 0.084 INFO:2026-08-06 14:05:23,524:[predict.py:833 - predict() ] ============================================== INFO:2026-08-06 14:05:23,701:[predict.py:848 - predict() ] counts pearson: [0.55585444 0.56031913] INFO:2026-08-06 14:05:23,701:[predict.py:849 - predict() ] counts spearman: [0.49163938 0.49886424]