INFO:2026-08-05 14:48:35,135:[predict.py:399 - predict() ] SEQGEN Class Name: MBPNetSequenceGenerator INFO:2026-08-05 14:48:35,146:[generators.py:483 - _pad_samples() ] mode 'test': Data size (after padding 113 samples) - 256 INFO:2026-08-05 14:48:35,158:[predict.py:460 - predict() ] Writing predictions to predictions/RUNX1_0Dox/fold_2/model_split000_predictions.h5 DEBUG:2026-08-05 14:48:35,170:[generators.py:731 - _epoch_run() ] test spawning process 0, df size (128, 3) sum(num_batches) 2 DEBUG:2026-08-05 14:48:35,198:[generators.py:731 - _epoch_run() ] test spawning process 1, df size (128, 3) sum(num_batches) 4 DEBUG:2026-08-05 14:48:35,222:[generators.py:757 - _epoch_run() ] test num_batches list [2, 2] DEBUG:2026-08-05 14:48:35,222:[generators.py:770 - _epoch_run() ] test starting stealer thread 0 [2] DEBUG:2026-08-05 14:48:35,222:[generators.py:770 - _epoch_run() ] test starting stealer thread 1 [2] DEBUG:2026-08-05 14:48:36,151:[generators.py:676 - _stealer() ] test stealer thread 1 got 2 batches from mpq DEBUG:2026-08-05 14:48:36,138:[generators.py:652 - _proc_target() ] test process 1 put 2 batches into mpq DEBUG:2026-08-05 14:48:36,443:[generators.py:652 - _proc_target() ] test process 0 put 2 batches into mpq DEBUG:2026-08-05 14:48:36,456:[generators.py:676 - _stealer() ] test stealer thread 0 got 2 batches from mpq DEBUG:2026-08-05 14:48:58,926:[generators.py:814 - gen() ] test waiting to join process 0 DEBUG:2026-08-05 14:48:58,926:[generators.py:819 - gen() ] test waiting to join thread 0 DEBUG:2026-08-05 14:48:58,926:[generators.py:823 - gen() ] test join complete for process 0 DEBUG:2026-08-05 14:48:58,926:[generators.py:814 - gen() ] test waiting to join process 1 DEBUG:2026-08-05 14:48:58,926:[generators.py:819 - gen() ] test waiting to join thread 1 DEBUG:2026-08-05 14:48:58,926:[generators.py:823 - gen() ] test join complete for process 1 DEBUG:2026-08-05 14:48:58,926:[generators.py:826 - gen() ] test Finished join for epoch DEBUG:2026-08-05 14:48:58,926:[generators.py:828 - gen() ] test Ready for next epoch INFO:2026-08-05 14:48:58,926:[predict.py:731 - predict() ] Writing to h5 file ... INFO:2026-08-05 14:48:58,988:[predict.py:747 - predict() ] Elapsed Time: 23.827799797058105 secs INFO:2026-08-05 14:48:58,988:[predict.py:751 - predict() ] Generating predicted profile bigWigs ... INFO:2026-08-05 14:48:58,988:[predict.py:753 - predict() ] predictions shape - (143, 1000, 2) INFO:2026-08-05 14:48:58,992:[predict.py:775 - predict() ] bigWig HEADER - [('chr1', 248956422), ('chr10', 133797422), ('chr11', 135086622), ('chr12', 133275309), ('chr13', 114364328), ('chr14', 107043718), ('chr15', 101991189), ('chr16', 90338345), ('chr17', 83257441), ('chr18', 80373285), ('chr19', 58617616), ('chr2', 242193529), ('chr20', 64444167), ('chr21', 46709983), ('chr22', 50818468), ('chr3', 198295559), ('chr4', 190214555), ('chr5', 181538259), ('chr6', 170805979), ('chr7', 159345973), ('chr8', 145138636), ('chr9', 138394717), ('chrM', 16569), ('chrX', 156040895), ('chrY', 57227415)] INFO:2026-08-05 14:48:59,382:[predict.py:801 - predict() ] min max median INFO:2026-08-05 14:48:59,382:[predict.py:806 - predict() ] mnll 0.000 0.400 0.060 INFO:2026-08-05 14:48:59,382:[predict.py:811 - predict() ] cross_entropy 0.000 0.400 0.060 INFO:2026-08-05 14:48:59,382:[predict.py:816 - predict() ] jsd 0.109 0.693 0.427 INFO:2026-08-05 14:48:59,382:[predict.py:821 - predict() ] spearman -0.431 0.835 0.403 INFO:2026-08-05 14:48:59,383:[predict.py:826 - predict() ] pearson -0.638 0.874 0.430 INFO:2026-08-05 14:48:59,383:[predict.py:831 - predict() ] mse 0.047 7.325 0.163 INFO:2026-08-05 14:48:59,383:[predict.py:833 - predict() ] ============================================== INFO:2026-08-05 14:48:59,397:[predict.py:848 - predict() ] counts pearson: [0.79955583 0.72895868] INFO:2026-08-05 14:48:59,398:[predict.py:849 - predict() ] counts spearman: [0.64791504 0.5937451 ] INFO:2026-08-06 14:11:14,197:[predict.py:399 - predict() ] SEQGEN Class Name: MBPNetSequenceGenerator INFO:2026-08-06 14:11:14,228:[generators.py:483 - _pad_samples() ] mode 'test': Data size (after padding 6 samples) - 1280 INFO:2026-08-06 14:11:14,270:[predict.py:460 - predict() ] Writing predictions to predictions/RUNX1_0Dox/fold_2/model_split000_predictions.h5 DEBUG:2026-08-06 14:11:14,284:[generators.py:731 - _epoch_run() ] test spawning process 0, df size (640, 3) sum(num_batches) 10 DEBUG:2026-08-06 14:11:14,313:[generators.py:731 - _epoch_run() ] test spawning process 1, df size (640, 3) sum(num_batches) 20 DEBUG:2026-08-06 14:11:14,338:[generators.py:757 - _epoch_run() ] test num_batches list [10, 10] DEBUG:2026-08-06 14:11:14,338:[generators.py:770 - _epoch_run() ] test starting stealer thread 0 [10] DEBUG:2026-08-06 14:11:14,350:[generators.py:770 - _epoch_run() ] test starting stealer thread 1 [10] DEBUG:2026-08-06 14:11:16,501:[generators.py:652 - _proc_target() ] test process 1 put 10 batches into mpq DEBUG:2026-08-06 14:11:16,518:[generators.py:676 - _stealer() ] test stealer thread 1 got 10 batches from mpq DEBUG:2026-08-06 14:11:16,580:[generators.py:652 - _proc_target() ] test process 0 put 10 batches into mpq DEBUG:2026-08-06 14:11:16,595:[generators.py:676 - _stealer() ] test stealer thread 0 got 10 batches from mpq DEBUG:2026-08-06 14:11:44,308:[generators.py:814 - gen() ] test waiting to join process 0 DEBUG:2026-08-06 14:11:44,308:[generators.py:819 - gen() ] test waiting to join thread 0 DEBUG:2026-08-06 14:11:44,308:[generators.py:823 - gen() ] test join complete for process 0 DEBUG:2026-08-06 14:11:44,308:[generators.py:814 - gen() ] test waiting to join process 1 DEBUG:2026-08-06 14:11:44,308:[generators.py:819 - gen() ] test waiting to join thread 1 DEBUG:2026-08-06 14:11:44,308:[generators.py:823 - gen() ] test join complete for process 1 DEBUG:2026-08-06 14:11:44,308:[generators.py:826 - gen() ] test Finished join for epoch DEBUG:2026-08-06 14:11:44,308:[generators.py:828 - gen() ] test Ready for next epoch INFO:2026-08-06 14:11:44,308:[predict.py:731 - predict() ] Writing to h5 file ... INFO:2026-08-06 14:11:46,652:[predict.py:747 - predict() ] Elapsed Time: 32.37823963165283 secs INFO:2026-08-06 14:11:46,652:[predict.py:751 - predict() ] Generating predicted profile bigWigs ... INFO:2026-08-06 14:11:46,652:[predict.py:753 - predict() ] predictions shape - (1274, 1000, 2) INFO:2026-08-06 14:11:46,655:[predict.py:775 - predict() ] bigWig HEADER - [('chr1', 248956422), ('chr10', 133797422), ('chr11', 135086622), ('chr12', 133275309), ('chr13', 114364328), ('chr14', 107043718), ('chr15', 101991189), ('chr16', 90338345), ('chr17', 83257441), ('chr18', 80373285), ('chr19', 58617616), ('chr2', 242193529), ('chr20', 64444167), ('chr21', 46709983), ('chr22', 50818468), ('chr3', 198295559), ('chr4', 190214555), ('chr5', 181538259), ('chr6', 170805979), ('chr7', 159345973), ('chr8', 145138636), ('chr9', 138394717), ('chrM', 16569), ('chrX', 156040895), ('chrY', 57227415)] INFO:2026-08-06 14:11:49,799:[predict.py:801 - predict() ] min max median INFO:2026-08-06 14:11:49,800:[predict.py:806 - predict() ] mnll 0.000 0.533 0.066 INFO:2026-08-06 14:11:49,800:[predict.py:811 - predict() ] cross_entropy 0.000 0.533 0.066 INFO:2026-08-06 14:11:49,800:[predict.py:816 - predict() ] jsd 0.095 0.735 0.502 INFO:2026-08-06 14:11:49,800:[predict.py:821 - predict() ] spearman -0.491 0.931 0.462 INFO:2026-08-06 14:11:49,800:[predict.py:826 - predict() ] pearson -0.552 0.903 0.482 INFO:2026-08-06 14:11:49,800:[predict.py:831 - predict() ] mse 0.015 11.881 0.084 INFO:2026-08-06 14:11:49,800:[predict.py:833 - predict() ] ============================================== INFO:2026-08-06 14:11:49,929:[predict.py:848 - predict() ] counts pearson: [0.60628103 0.60868928] INFO:2026-08-06 14:11:49,929:[predict.py:849 - predict() ] counts spearman: [0.51124303 0.52002966]