INFO:2026-08-05 14:51:09,044:[predict.py:399 - predict() ] SEQGEN Class Name: MBPNetSequenceGenerator INFO:2026-08-05 14:51:09,064:[generators.py:483 - _pad_samples() ] mode 'test': Data size (after padding 113 samples) - 256 INFO:2026-08-05 14:51:09,068:[predict.py:460 - predict() ] Writing predictions to predictions/RUNX1_0Dox/fold_1/model_split000_predictions.h5 DEBUG:2026-08-05 14:51:09,085:[generators.py:731 - _epoch_run() ] test spawning process 0, df size (128, 3) sum(num_batches) 2 DEBUG:2026-08-05 14:51:09,133:[generators.py:731 - _epoch_run() ] test spawning process 1, df size (128, 3) sum(num_batches) 4 DEBUG:2026-08-05 14:51:09,175:[generators.py:757 - _epoch_run() ] test num_batches list [2, 2] DEBUG:2026-08-05 14:51:09,175:[generators.py:770 - _epoch_run() ] test starting stealer thread 0 [2] DEBUG:2026-08-05 14:51:09,176:[generators.py:770 - _epoch_run() ] test starting stealer thread 1 [2] DEBUG:2026-08-05 14:51:15,714:[generators.py:652 - _proc_target() ] test process 1 put 2 batches into mpq DEBUG:2026-08-05 14:51:15,724:[generators.py:676 - _stealer() ] test stealer thread 1 got 2 batches from mpq DEBUG:2026-08-05 14:51:15,812:[generators.py:652 - _proc_target() ] test process 0 put 2 batches into mpq DEBUG:2026-08-05 14:51:15,823:[generators.py:676 - _stealer() ] test stealer thread 0 got 2 batches from mpq DEBUG:2026-08-05 14:51:59,639:[generators.py:814 - gen() ] test waiting to join process 0 DEBUG:2026-08-05 14:51:59,639:[generators.py:819 - gen() ] test waiting to join thread 0 DEBUG:2026-08-05 14:51:59,639:[generators.py:823 - gen() ] test join complete for process 0 DEBUG:2026-08-05 14:51:59,640:[generators.py:814 - gen() ] test waiting to join process 1 DEBUG:2026-08-05 14:51:59,640:[generators.py:819 - gen() ] test waiting to join thread 1 DEBUG:2026-08-05 14:51:59,640:[generators.py:823 - gen() ] test join complete for process 1 DEBUG:2026-08-05 14:51:59,640:[generators.py:826 - gen() ] test Finished join for epoch DEBUG:2026-08-05 14:51:59,640:[generators.py:828 - gen() ] test Ready for next epoch INFO:2026-08-05 14:51:59,640:[predict.py:731 - predict() ] Writing to h5 file ... INFO:2026-08-05 14:51:59,716:[predict.py:747 - predict() ] Elapsed Time: 50.645418643951416 secs INFO:2026-08-05 14:51:59,716:[predict.py:751 - predict() ] Generating predicted profile bigWigs ... INFO:2026-08-05 14:51:59,716:[predict.py:753 - predict() ] predictions shape - (143, 1000, 2) INFO:2026-08-05 14:51:59,720:[predict.py:775 - predict() ] bigWig HEADER - [('chr1', 248956422), ('chr10', 133797422), ('chr11', 135086622), ('chr12', 133275309), ('chr13', 114364328), ('chr14', 107043718), ('chr15', 101991189), ('chr16', 90338345), ('chr17', 83257441), ('chr18', 80373285), ('chr19', 58617616), ('chr2', 242193529), ('chr20', 64444167), ('chr21', 46709983), ('chr22', 50818468), ('chr3', 198295559), ('chr4', 190214555), ('chr5', 181538259), ('chr6', 170805979), ('chr7', 159345973), ('chr8', 145138636), ('chr9', 138394717), ('chrM', 16569), ('chrX', 156040895), ('chrY', 57227415)] INFO:2026-08-05 14:52:00,191:[predict.py:801 - predict() ] min max median INFO:2026-08-05 14:52:00,191:[predict.py:806 - predict() ] mnll 0.000 0.094 0.011 INFO:2026-08-05 14:52:00,191:[predict.py:811 - predict() ] cross_entropy 0.000 0.094 0.011 INFO:2026-08-05 14:52:00,192:[predict.py:816 - predict() ] jsd 0.107 0.650 0.378 INFO:2026-08-05 14:52:00,192:[predict.py:821 - predict() ] spearman -0.186 0.455 0.116 INFO:2026-08-05 14:52:00,192:[predict.py:826 - predict() ] pearson -0.162 0.455 0.114 INFO:2026-08-05 14:52:00,192:[predict.py:831 - predict() ] mse 0.009 10.778 0.163 INFO:2026-08-05 14:52:00,192:[predict.py:833 - predict() ] ============================================== INFO:2026-08-05 14:52:00,204:[predict.py:848 - predict() ] counts pearson: [0.73383778 0.72872759] INFO:2026-08-05 14:52:00,204:[predict.py:849 - predict() ] counts spearman: [0.50499077 0.51604152] INFO:2026-08-06 14:10:58,924:[predict.py:399 - predict() ] SEQGEN Class Name: MBPNetSequenceGenerator INFO:2026-08-06 14:10:58,953:[generators.py:483 - _pad_samples() ] mode 'test': Data size (after padding 6 samples) - 1280 INFO:2026-08-06 14:10:58,974:[predict.py:460 - predict() ] Writing predictions to predictions/RUNX1_0Dox/fold_1/model_split000_predictions.h5 DEBUG:2026-08-06 14:10:59,134:[generators.py:731 - _epoch_run() ] test spawning process 0, df size (640, 3) sum(num_batches) 10 DEBUG:2026-08-06 14:10:59,190:[generators.py:731 - _epoch_run() ] test spawning process 1, df size (640, 3) sum(num_batches) 20 DEBUG:2026-08-06 14:10:59,216:[generators.py:757 - _epoch_run() ] test num_batches list [10, 10] DEBUG:2026-08-06 14:10:59,216:[generators.py:770 - _epoch_run() ] test starting stealer thread 0 [10] DEBUG:2026-08-06 14:10:59,227:[generators.py:770 - _epoch_run() ] test starting stealer thread 1 [10] DEBUG:2026-08-06 14:11:05,595:[generators.py:652 - _proc_target() ] test process 0 put 10 batches into mpq DEBUG:2026-08-06 14:11:05,666:[generators.py:676 - _stealer() ] test stealer thread 0 got 10 batches from mpq DEBUG:2026-08-06 14:11:06,736:[generators.py:676 - _stealer() ] test stealer thread 1 got 10 batches from mpq DEBUG:2026-08-06 14:11:06,717:[generators.py:652 - _proc_target() ] test process 1 put 10 batches into mpq DEBUG:2026-08-06 14:11:27,950:[generators.py:814 - gen() ] test waiting to join process 0 DEBUG:2026-08-06 14:11:27,950:[generators.py:819 - gen() ] test waiting to join thread 0 DEBUG:2026-08-06 14:11:27,950:[generators.py:823 - gen() ] test join complete for process 0 DEBUG:2026-08-06 14:11:27,950:[generators.py:814 - gen() ] test waiting to join process 1 DEBUG:2026-08-06 14:11:27,950:[generators.py:819 - gen() ] test waiting to join thread 1 DEBUG:2026-08-06 14:11:27,950:[generators.py:823 - gen() ] test join complete for process 1 DEBUG:2026-08-06 14:11:27,950:[generators.py:826 - gen() ] test Finished join for epoch DEBUG:2026-08-06 14:11:27,950:[generators.py:828 - gen() ] test Ready for next epoch INFO:2026-08-06 14:11:27,951:[predict.py:731 - predict() ] Writing to h5 file ... INFO:2026-08-06 14:11:28,612:[predict.py:747 - predict() ] Elapsed Time: 29.633926153182983 secs INFO:2026-08-06 14:11:28,612:[predict.py:751 - predict() ] Generating predicted profile bigWigs ... INFO:2026-08-06 14:11:28,613:[predict.py:753 - predict() ] predictions shape - (1274, 1000, 2) INFO:2026-08-06 14:11:28,619:[predict.py:775 - predict() ] bigWig HEADER - [('chr1', 248956422), ('chr10', 133797422), ('chr11', 135086622), ('chr12', 133275309), ('chr13', 114364328), ('chr14', 107043718), ('chr15', 101991189), ('chr16', 90338345), ('chr17', 83257441), ('chr18', 80373285), ('chr19', 58617616), ('chr2', 242193529), ('chr20', 64444167), ('chr21', 46709983), ('chr22', 50818468), ('chr3', 198295559), ('chr4', 190214555), ('chr5', 181538259), ('chr6', 170805979), ('chr7', 159345973), ('chr8', 145138636), ('chr9', 138394717), ('chrM', 16569), ('chrX', 156040895), ('chrY', 57227415)] INFO:2026-08-06 14:11:32,883:[predict.py:801 - predict() ] min max median INFO:2026-08-06 14:11:32,884:[predict.py:806 - predict() ] mnll 0.000 0.522 0.054 INFO:2026-08-06 14:11:32,884:[predict.py:811 - predict() ] cross_entropy 0.000 0.522 0.054 INFO:2026-08-06 14:11:32,884:[predict.py:816 - predict() ] jsd 0.119 0.699 0.483 INFO:2026-08-06 14:11:32,885:[predict.py:821 - predict() ] spearman -0.517 0.881 0.405 INFO:2026-08-06 14:11:32,885:[predict.py:826 - predict() ] pearson -0.588 0.894 0.437 INFO:2026-08-06 14:11:32,885:[predict.py:831 - predict() ] mse 0.013 12.304 0.084 INFO:2026-08-06 14:11:32,885:[predict.py:833 - predict() ] ============================================== INFO:2026-08-06 14:11:33,126:[predict.py:848 - predict() ] counts pearson: [0.61501003 0.61729166] INFO:2026-08-06 14:11:33,127:[predict.py:849 - predict() ] counts spearman: [0.53760588 0.53968633]