INFO:2026-07-10 00:03:57,081:[predict.py:399 - predict() ] SEQGEN Class Name: MBPNetSequenceGenerator INFO:2026-07-10 00:03:57,094:[generators.py:483 - _pad_samples() ] mode 'test': Data size (after padding 10 samples) - 896 INFO:2026-07-10 00:03:57,097:[predict.py:460 - predict() ] Writing predictions to predictions/RUNX1ETO_control_ChIPSeq/fold_4/model_split000_predictions.h5 DEBUG:2026-07-10 00:03:57,115:[generators.py:731 - _epoch_run() ] test spawning process 0, df size (448, 3) sum(num_batches) 7 DEBUG:2026-07-10 00:03:57,185:[generators.py:731 - _epoch_run() ] test spawning process 1, df size (448, 3) sum(num_batches) 14 DEBUG:2026-07-10 00:03:57,250:[generators.py:757 - _epoch_run() ] test num_batches list [7, 7] DEBUG:2026-07-10 00:03:57,250:[generators.py:770 - _epoch_run() ] test starting stealer thread 0 [7] DEBUG:2026-07-10 00:03:57,262:[generators.py:770 - _epoch_run() ] test starting stealer thread 1 [7] DEBUG:2026-07-10 00:03:58,483:[generators.py:652 - _proc_target() ] test process 1 put 7 batches into mpq DEBUG:2026-07-10 00:03:58,510:[generators.py:676 - _stealer() ] test stealer thread 1 got 7 batches from mpq DEBUG:2026-07-10 00:03:58,742:[generators.py:652 - _proc_target() ] test process 0 put 7 batches into mpq DEBUG:2026-07-10 00:03:58,769:[generators.py:676 - _stealer() ] test stealer thread 0 got 7 batches from mpq DEBUG:2026-07-10 00:09:58,118:[generators.py:814 - gen() ] test waiting to join process 0 DEBUG:2026-07-10 00:09:58,132:[generators.py:819 - gen() ] test waiting to join thread 0 DEBUG:2026-07-10 00:09:58,132:[generators.py:823 - gen() ] test join complete for process 0 DEBUG:2026-07-10 00:09:58,132:[generators.py:814 - gen() ] test waiting to join process 1 DEBUG:2026-07-10 00:09:58,132:[generators.py:819 - gen() ] test waiting to join thread 1 DEBUG:2026-07-10 00:09:58,132:[generators.py:823 - gen() ] test join complete for process 1 DEBUG:2026-07-10 00:09:58,132:[generators.py:826 - gen() ] test Finished join for epoch DEBUG:2026-07-10 00:09:58,132:[generators.py:828 - gen() ] test Ready for next epoch INFO:2026-07-10 00:09:58,132:[predict.py:731 - predict() ] Writing to h5 file ... INFO:2026-07-10 00:09:59,257:[predict.py:747 - predict() ] Elapsed Time: 362.15620374679565 secs INFO:2026-07-10 00:09:59,257:[predict.py:751 - predict() ] Generating predicted profile bigWigs ... INFO:2026-07-10 00:09:59,258:[predict.py:753 - predict() ] predictions shape - (886, 1000, 2) INFO:2026-07-10 00:09:59,260:[predict.py:775 - predict() ] bigWig HEADER - [('chr1', 248956422), ('chr10', 133797422), ('chr11', 135086622), ('chr12', 133275309), ('chr13', 114364328), ('chr14', 107043718), ('chr15', 101991189), ('chr16', 90338345), ('chr17', 83257441), ('chr18', 80373285), ('chr19', 58617616), ('chr2', 242193529), ('chr20', 64444167), ('chr21', 46709983), ('chr22', 50818468), ('chr3', 198295559), ('chr4', 190214555), ('chr5', 181538259), ('chr6', 170805979), ('chr7', 159345973), ('chr8', 145138636), ('chr9', 138394717), ('chrM', 16569), ('chrX', 156040895), ('chrY', 57227415)] INFO:2026-07-10 00:10:01,199:[predict.py:801 - predict() ] min max median INFO:2026-07-10 00:10:01,199:[predict.py:806 - predict() ] mnll 0.000 0.593 0.166 INFO:2026-07-10 00:10:01,199:[predict.py:811 - predict() ] cross_entropy 0.000 0.593 0.166 INFO:2026-07-10 00:10:01,199:[predict.py:816 - predict() ] jsd 0.058 0.787 0.481 INFO:2026-07-10 00:10:01,199:[predict.py:821 - predict() ] spearman -0.325 0.936 0.640 INFO:2026-07-10 00:10:01,199:[predict.py:826 - predict() ] pearson -0.459 0.935 0.626 INFO:2026-07-10 00:10:01,200:[predict.py:831 - predict() ] mse 0.011 10.208 0.054 INFO:2026-07-10 00:10:01,200:[predict.py:833 - predict() ] ============================================== INFO:2026-07-10 00:10:01,216:[predict.py:848 - predict() ] counts pearson: [0.61414071 0.64200461] INFO:2026-07-10 00:10:01,216:[predict.py:849 - predict() ] counts spearman: [0.53977131 0.57610029] INFO:2026-07-10 15:20:20,993:[predict.py:399 - predict() ] SEQGEN Class Name: MBPNetSequenceGenerator INFO:2026-07-10 15:20:21,059:[generators.py:483 - _pad_samples() ] mode 'test': Data size (after padding 10 samples) - 896 INFO:2026-07-10 15:20:21,088:[predict.py:460 - predict() ] Writing predictions to predictions/RUNX1ETO_control_ChIPSeq/fold_4/model_split000_predictions.h5 DEBUG:2026-07-10 15:20:21,666:[generators.py:731 - _epoch_run() ] test spawning process 0, df size (448, 3) sum(num_batches) 7 DEBUG:2026-07-10 15:20:21,785:[generators.py:731 - _epoch_run() ] test spawning process 1, df size (448, 3) sum(num_batches) 14 DEBUG:2026-07-10 15:20:21,796:[generators.py:757 - _epoch_run() ] test num_batches list [7, 7] DEBUG:2026-07-10 15:20:21,796:[generators.py:770 - _epoch_run() ] test starting stealer thread 0 [7] DEBUG:2026-07-10 15:20:21,803:[generators.py:770 - _epoch_run() ] test starting stealer thread 1 [7] DEBUG:2026-07-10 15:20:24,768:[generators.py:676 - _stealer() ] test stealer thread 0 got 7 batches from mpq DEBUG:2026-07-10 15:20:24,748:[generators.py:652 - _proc_target() ] test process 0 put 7 batches into mpq DEBUG:2026-07-10 15:20:25,088:[generators.py:676 - _stealer() ] test stealer thread 1 got 7 batches from mpq DEBUG:2026-07-10 15:20:25,076:[generators.py:652 - _proc_target() ] test process 1 put 7 batches into mpq DEBUG:2026-07-10 15:21:45,066:[generators.py:814 - gen() ] test waiting to join process 0 DEBUG:2026-07-10 15:21:45,067:[generators.py:819 - gen() ] test waiting to join thread 0 DEBUG:2026-07-10 15:21:45,067:[generators.py:823 - gen() ] test join complete for process 0 DEBUG:2026-07-10 15:21:45,067:[generators.py:814 - gen() ] test waiting to join process 1 DEBUG:2026-07-10 15:21:45,067:[generators.py:819 - gen() ] test waiting to join thread 1 DEBUG:2026-07-10 15:21:45,067:[generators.py:823 - gen() ] test join complete for process 1 DEBUG:2026-07-10 15:21:45,067:[generators.py:826 - gen() ] test Finished join for epoch DEBUG:2026-07-10 15:21:45,067:[generators.py:828 - gen() ] test Ready for next epoch INFO:2026-07-10 15:21:45,067:[predict.py:731 - predict() ] Writing to h5 file ... INFO:2026-07-10 15:21:46,052:[predict.py:747 - predict() ] Elapsed Time: 84.9605827331543 secs INFO:2026-07-10 15:21:46,052:[predict.py:751 - predict() ] Generating predicted profile bigWigs ... INFO:2026-07-10 15:21:46,052:[predict.py:753 - predict() ] predictions shape - (886, 1000, 2) INFO:2026-07-10 15:21:46,056:[predict.py:775 - predict() ] bigWig HEADER - [('chr1', 248956422), ('chr10', 133797422), ('chr11', 135086622), ('chr12', 133275309), ('chr13', 114364328), ('chr14', 107043718), ('chr15', 101991189), ('chr16', 90338345), ('chr17', 83257441), ('chr18', 80373285), ('chr19', 58617616), ('chr2', 242193529), ('chr20', 64444167), ('chr21', 46709983), ('chr22', 50818468), ('chr3', 198295559), ('chr4', 190214555), ('chr5', 181538259), ('chr6', 170805979), ('chr7', 159345973), ('chr8', 145138636), ('chr9', 138394717), ('chrM', 16569), ('chrX', 156040895), ('chrY', 57227415)] INFO:2026-07-10 15:21:48,375:[predict.py:801 - predict() ] min max median INFO:2026-07-10 15:21:48,376:[predict.py:806 - predict() ] mnll 0.000 0.597 0.177 INFO:2026-07-10 15:21:48,376:[predict.py:811 - predict() ] cross_entropy 0.000 0.597 0.178 INFO:2026-07-10 15:21:48,376:[predict.py:816 - predict() ] jsd 0.059 0.786 0.499 INFO:2026-07-10 15:21:48,376:[predict.py:821 - predict() ] spearman -0.305 0.940 0.671 INFO:2026-07-10 15:21:48,376:[predict.py:826 - predict() ] pearson -0.525 0.934 0.647 INFO:2026-07-10 15:21:48,376:[predict.py:831 - predict() ] mse 0.011 10.206 0.054 INFO:2026-07-10 15:21:48,376:[predict.py:833 - predict() ] ============================================== INFO:2026-07-10 15:21:48,424:[predict.py:848 - predict() ] counts pearson: [0.6236383 0.65105552] INFO:2026-07-10 15:21:48,424:[predict.py:849 - predict() ] counts spearman: [0.54221301 0.58324848]