INFO:2026-07-09 23:52:52,265:[predict.py:399 - predict() ] SEQGEN Class Name: MBPNetSequenceGenerator INFO:2026-07-09 23:52:52,281:[generators.py:483 - _pad_samples() ] mode 'test': Data size (after padding 10 samples) - 896 INFO:2026-07-09 23:52:52,286:[predict.py:460 - predict() ] Writing predictions to predictions/RUNX1ETO_control_ChIPSeq/fold_3/model_split000_predictions.h5 DEBUG:2026-07-09 23:52:52,316:[generators.py:731 - _epoch_run() ] test spawning process 0, df size (448, 3) sum(num_batches) 7 DEBUG:2026-07-09 23:52:52,351:[generators.py:731 - _epoch_run() ] test spawning process 1, df size (448, 3) sum(num_batches) 14 DEBUG:2026-07-09 23:52:52,375:[generators.py:757 - _epoch_run() ] test num_batches list [7, 7] DEBUG:2026-07-09 23:52:52,376:[generators.py:770 - _epoch_run() ] test starting stealer thread 0 [7] DEBUG:2026-07-09 23:52:52,376:[generators.py:770 - _epoch_run() ] test starting stealer thread 1 [7] DEBUG:2026-07-09 23:52:55,263:[generators.py:652 - _proc_target() ] test process 1 put 7 batches into mpq DEBUG:2026-07-09 23:52:55,303:[generators.py:676 - _stealer() ] test stealer thread 1 got 7 batches from mpq DEBUG:2026-07-09 23:52:55,342:[generators.py:652 - _proc_target() ] test process 0 put 7 batches into mpq DEBUG:2026-07-09 23:52:55,359:[generators.py:676 - _stealer() ] test stealer thread 0 got 7 batches from mpq DEBUG:2026-07-09 23:53:34,150:[generators.py:814 - gen() ] test waiting to join process 0 DEBUG:2026-07-09 23:53:34,150:[generators.py:819 - gen() ] test waiting to join thread 0 DEBUG:2026-07-09 23:53:34,150:[generators.py:823 - gen() ] test join complete for process 0 DEBUG:2026-07-09 23:53:34,150:[generators.py:814 - gen() ] test waiting to join process 1 DEBUG:2026-07-09 23:53:34,151:[generators.py:819 - gen() ] test waiting to join thread 1 DEBUG:2026-07-09 23:53:34,151:[generators.py:823 - gen() ] test join complete for process 1 DEBUG:2026-07-09 23:53:34,151:[generators.py:826 - gen() ] test Finished join for epoch DEBUG:2026-07-09 23:53:34,151:[generators.py:828 - gen() ] test Ready for next epoch INFO:2026-07-09 23:53:34,151:[predict.py:731 - predict() ] Writing to h5 file ... INFO:2026-07-09 23:53:34,773:[predict.py:747 - predict() ] Elapsed Time: 42.484288692474365 secs INFO:2026-07-09 23:53:34,773:[predict.py:751 - predict() ] Generating predicted profile bigWigs ... INFO:2026-07-09 23:53:34,773:[predict.py:753 - predict() ] predictions shape - (886, 1000, 2) INFO:2026-07-09 23:53:34,779:[predict.py:775 - predict() ] bigWig HEADER - [('chr1', 248956422), ('chr10', 133797422), ('chr11', 135086622), ('chr12', 133275309), ('chr13', 114364328), ('chr14', 107043718), ('chr15', 101991189), ('chr16', 90338345), ('chr17', 83257441), ('chr18', 80373285), ('chr19', 58617616), ('chr2', 242193529), ('chr20', 64444167), ('chr21', 46709983), ('chr22', 50818468), ('chr3', 198295559), ('chr4', 190214555), ('chr5', 181538259), ('chr6', 170805979), ('chr7', 159345973), ('chr8', 145138636), ('chr9', 138394717), ('chrM', 16569), ('chrX', 156040895), ('chrY', 57227415)] INFO:2026-07-09 23:53:38,049:[predict.py:801 - predict() ] min max median INFO:2026-07-09 23:53:38,049:[predict.py:806 - predict() ] mnll 0.000 0.609 0.170 INFO:2026-07-09 23:53:38,050:[predict.py:811 - predict() ] cross_entropy 0.000 0.609 0.171 INFO:2026-07-09 23:53:38,050:[predict.py:816 - predict() ] jsd 0.053 0.756 0.481 INFO:2026-07-09 23:53:38,050:[predict.py:821 - predict() ] spearman -0.258 0.941 0.649 INFO:2026-07-09 23:53:38,050:[predict.py:826 - predict() ] pearson -0.422 0.923 0.624 INFO:2026-07-09 23:53:38,051:[predict.py:831 - predict() ] mse 0.011 10.221 0.055 INFO:2026-07-09 23:53:38,051:[predict.py:833 - predict() ] ============================================== INFO:2026-07-09 23:53:38,064:[predict.py:848 - predict() ] counts pearson: [0.6239571 0.64587925] INFO:2026-07-09 23:53:38,064:[predict.py:849 - predict() ] counts spearman: [0.55009827 0.57972236] INFO:2026-07-10 00:07:14,571:[predict.py:399 - predict() ] SEQGEN Class Name: MBPNetSequenceGenerator INFO:2026-07-10 00:07:14,592:[generators.py:483 - _pad_samples() ] mode 'test': Data size (after padding 10 samples) - 896 INFO:2026-07-10 00:07:14,626:[predict.py:460 - predict() ] Writing predictions to predictions/RUNX1ETO_control_ChIPSeq/fold_3/model_split000_predictions.h5 DEBUG:2026-07-10 00:07:14,643:[generators.py:731 - _epoch_run() ] test spawning process 0, df size (448, 3) sum(num_batches) 7 DEBUG:2026-07-10 00:07:14,665:[generators.py:731 - _epoch_run() ] test spawning process 1, df size (448, 3) sum(num_batches) 14 DEBUG:2026-07-10 00:07:14,682:[generators.py:757 - _epoch_run() ] test num_batches list [7, 7] DEBUG:2026-07-10 00:07:14,683:[generators.py:770 - _epoch_run() ] test starting stealer thread 0 [7] DEBUG:2026-07-10 00:07:14,683:[generators.py:770 - _epoch_run() ] test starting stealer thread 1 [7] DEBUG:2026-07-10 00:07:17,861:[generators.py:676 - _stealer() ] test stealer thread 0 got 7 batches from mpq DEBUG:2026-07-10 00:07:17,840:[generators.py:652 - _proc_target() ] test process 0 put 7 batches into mpq DEBUG:2026-07-10 00:07:17,917:[generators.py:652 - _proc_target() ] test process 1 put 7 batches into mpq DEBUG:2026-07-10 00:07:17,946:[generators.py:676 - _stealer() ] test stealer thread 1 got 7 batches from mpq DEBUG:2026-07-10 00:07:30,666:[generators.py:814 - gen() ] test waiting to join process 0 DEBUG:2026-07-10 00:07:30,667:[generators.py:819 - gen() ] test waiting to join thread 0 DEBUG:2026-07-10 00:07:30,667:[generators.py:823 - gen() ] test join complete for process 0 DEBUG:2026-07-10 00:07:30,667:[generators.py:814 - gen() ] test waiting to join process 1 DEBUG:2026-07-10 00:07:30,667:[generators.py:819 - gen() ] test waiting to join thread 1 DEBUG:2026-07-10 00:07:30,667:[generators.py:823 - gen() ] test join complete for process 1 DEBUG:2026-07-10 00:07:30,667:[generators.py:826 - gen() ] test Finished join for epoch DEBUG:2026-07-10 00:07:30,667:[generators.py:828 - gen() ] test Ready for next epoch INFO:2026-07-10 00:07:30,667:[predict.py:731 - predict() ] Writing to h5 file ... INFO:2026-07-10 00:07:31,268:[predict.py:747 - predict() ] Elapsed Time: 16.63727378845215 secs INFO:2026-07-10 00:07:31,268:[predict.py:751 - predict() ] Generating predicted profile bigWigs ... INFO:2026-07-10 00:07:31,268:[predict.py:753 - predict() ] predictions shape - (886, 1000, 2) INFO:2026-07-10 00:07:31,277:[predict.py:775 - predict() ] bigWig HEADER - [('chr1', 248956422), ('chr10', 133797422), ('chr11', 135086622), ('chr12', 133275309), ('chr13', 114364328), ('chr14', 107043718), ('chr15', 101991189), ('chr16', 90338345), ('chr17', 83257441), ('chr18', 80373285), ('chr19', 58617616), ('chr2', 242193529), ('chr20', 64444167), ('chr21', 46709983), ('chr22', 50818468), ('chr3', 198295559), ('chr4', 190214555), ('chr5', 181538259), ('chr6', 170805979), ('chr7', 159345973), ('chr8', 145138636), ('chr9', 138394717), ('chrM', 16569), ('chrX', 156040895), ('chrY', 57227415)] INFO:2026-07-10 00:07:35,876:[predict.py:801 - predict() ] min max median INFO:2026-07-10 00:07:35,877:[predict.py:806 - predict() ] mnll 0.000 0.533 0.111 INFO:2026-07-10 00:07:35,877:[predict.py:811 - predict() ] cross_entropy 0.000 0.533 0.111 INFO:2026-07-10 00:07:35,878:[predict.py:816 - predict() ] jsd 0.082 0.752 0.406 INFO:2026-07-10 00:07:35,878:[predict.py:821 - predict() ] spearman -0.602 0.943 0.497 INFO:2026-07-10 00:07:35,878:[predict.py:826 - predict() ] pearson -0.741 0.917 0.529 INFO:2026-07-10 00:07:35,878:[predict.py:831 - predict() ] mse 0.011 10.250 0.056 INFO:2026-07-10 00:07:35,879:[predict.py:833 - predict() ] ============================================== INFO:2026-07-10 00:07:36,206:[predict.py:848 - predict() ] counts pearson: [0.60016997 0.62003267] INFO:2026-07-10 00:07:36,207:[predict.py:849 - predict() ] counts spearman: [0.54156152 0.5628028 ] INFO:2026-07-10 15:03:39,385:[predict.py:399 - predict() ] SEQGEN Class Name: MBPNetSequenceGenerator INFO:2026-07-10 15:03:39,415:[generators.py:483 - _pad_samples() ] mode 'test': Data size (after padding 10 samples) - 896 INFO:2026-07-10 15:03:39,468:[predict.py:460 - predict() ] Writing predictions to predictions/RUNX1ETO_control_ChIPSeq/fold_3/model_split000_predictions.h5 DEBUG:2026-07-10 15:03:39,486:[generators.py:731 - _epoch_run() ] test spawning process 0, df size (448, 3) sum(num_batches) 7 DEBUG:2026-07-10 15:03:39,530:[generators.py:731 - _epoch_run() ] test spawning process 1, df size (448, 3) sum(num_batches) 14 DEBUG:2026-07-10 15:03:39,606:[generators.py:757 - _epoch_run() ] test num_batches list [7, 7] DEBUG:2026-07-10 15:03:39,607:[generators.py:770 - _epoch_run() ] test starting stealer thread 0 [7] DEBUG:2026-07-10 15:03:39,607:[generators.py:770 - _epoch_run() ] test starting stealer thread 1 [7] DEBUG:2026-07-10 15:03:42,564:[generators.py:652 - _proc_target() ] test process 0 put 7 batches into mpq DEBUG:2026-07-10 15:03:42,603:[generators.py:676 - _stealer() ] test stealer thread 0 got 7 batches from mpq DEBUG:2026-07-10 15:03:42,791:[generators.py:652 - _proc_target() ] test process 1 put 7 batches into mpq DEBUG:2026-07-10 15:03:42,817:[generators.py:676 - _stealer() ] test stealer thread 1 got 7 batches from mpq DEBUG:2026-07-10 15:11:51,362:[generators.py:814 - gen() ] test waiting to join process 0 DEBUG:2026-07-10 15:11:51,362:[generators.py:819 - gen() ] test waiting to join thread 0 DEBUG:2026-07-10 15:11:51,362:[generators.py:823 - gen() ] test join complete for process 0 DEBUG:2026-07-10 15:11:51,362:[generators.py:814 - gen() ] test waiting to join process 1 DEBUG:2026-07-10 15:11:51,362:[generators.py:819 - gen() ] test waiting to join thread 1 DEBUG:2026-07-10 15:11:51,362:[generators.py:823 - gen() ] test join complete for process 1 DEBUG:2026-07-10 15:11:51,362:[generators.py:826 - gen() ] test Finished join for epoch DEBUG:2026-07-10 15:11:51,362:[generators.py:828 - gen() ] test Ready for next epoch INFO:2026-07-10 15:11:51,363:[predict.py:731 - predict() ] Writing to h5 file ... INFO:2026-07-10 15:11:51,801:[predict.py:747 - predict() ] Elapsed Time: 492.3322288990021 secs INFO:2026-07-10 15:11:51,802:[predict.py:751 - predict() ] Generating predicted profile bigWigs ... INFO:2026-07-10 15:11:51,802:[predict.py:753 - predict() ] predictions shape - (886, 1000, 2) INFO:2026-07-10 15:11:51,805:[predict.py:775 - predict() ] bigWig HEADER - [('chr1', 248956422), ('chr10', 133797422), ('chr11', 135086622), ('chr12', 133275309), ('chr13', 114364328), ('chr14', 107043718), ('chr15', 101991189), ('chr16', 90338345), ('chr17', 83257441), ('chr18', 80373285), ('chr19', 58617616), ('chr2', 242193529), ('chr20', 64444167), ('chr21', 46709983), ('chr22', 50818468), ('chr3', 198295559), ('chr4', 190214555), ('chr5', 181538259), ('chr6', 170805979), ('chr7', 159345973), ('chr8', 145138636), ('chr9', 138394717), ('chrM', 16569), ('chrX', 156040895), ('chrY', 57227415)] INFO:2026-07-10 15:11:55,421:[predict.py:801 - predict() ] min max median INFO:2026-07-10 15:11:55,421:[predict.py:806 - predict() ] mnll 0.000 0.551 0.133 INFO:2026-07-10 15:11:55,421:[predict.py:811 - predict() ] cross_entropy 0.000 0.551 0.133 INFO:2026-07-10 15:11:55,421:[predict.py:816 - predict() ] jsd 0.102 0.742 0.432 INFO:2026-07-10 15:11:55,422:[predict.py:821 - predict() ] spearman -0.453 0.941 0.559 INFO:2026-07-10 15:11:55,422:[predict.py:826 - predict() ] pearson -0.588 0.918 0.561 INFO:2026-07-10 15:11:55,422:[predict.py:831 - predict() ] mse 0.011 10.239 0.055 INFO:2026-07-10 15:11:55,422:[predict.py:833 - predict() ] ============================================== INFO:2026-07-10 15:11:55,471:[predict.py:848 - predict() ] counts pearson: [0.59809112 0.62683688] INFO:2026-07-10 15:11:55,472:[predict.py:849 - predict() ] counts spearman: [0.53882096 0.5680467 ]