INFO:2026-07-09 23:40:26,599:[predict.py:399 - predict() ] SEQGEN Class Name: MBPNetSequenceGenerator INFO:2026-07-09 23:40:26,615:[generators.py:483 - _pad_samples() ] mode 'test': Data size (after padding 10 samples) - 896 INFO:2026-07-09 23:40:26,619:[predict.py:460 - predict() ] Writing predictions to predictions/RUNX1ETO_control_ChIPSeq/fold_2/model_split000_predictions.h5 DEBUG:2026-07-09 23:40:26,635:[generators.py:731 - _epoch_run() ] test spawning process 0, df size (448, 3) sum(num_batches) 7 DEBUG:2026-07-09 23:40:26,667:[generators.py:731 - _epoch_run() ] test spawning process 1, df size (448, 3) sum(num_batches) 14 DEBUG:2026-07-09 23:40:26,694:[generators.py:757 - _epoch_run() ] test num_batches list [7, 7] DEBUG:2026-07-09 23:40:26,695:[generators.py:770 - _epoch_run() ] test starting stealer thread 0 [7] DEBUG:2026-07-09 23:40:26,695:[generators.py:770 - _epoch_run() ] test starting stealer thread 1 [7] DEBUG:2026-07-09 23:40:28,922:[generators.py:652 - _proc_target() ] test process 1 put 7 batches into mpq DEBUG:2026-07-09 23:40:28,938:[generators.py:676 - _stealer() ] test stealer thread 1 got 7 batches from mpq DEBUG:2026-07-09 23:40:29,498:[generators.py:652 - _proc_target() ] test process 0 put 7 batches into mpq DEBUG:2026-07-09 23:40:29,512:[generators.py:676 - _stealer() ] test stealer thread 0 got 7 batches from mpq DEBUG:2026-07-09 23:41:02,922:[generators.py:814 - gen() ] test waiting to join process 0 DEBUG:2026-07-09 23:41:02,922:[generators.py:819 - gen() ] test waiting to join thread 0 DEBUG:2026-07-09 23:41:02,922:[generators.py:823 - gen() ] test join complete for process 0 DEBUG:2026-07-09 23:41:02,922:[generators.py:814 - gen() ] test waiting to join process 1 DEBUG:2026-07-09 23:41:02,923:[generators.py:819 - gen() ] test waiting to join thread 1 DEBUG:2026-07-09 23:41:02,923:[generators.py:823 - gen() ] test join complete for process 1 DEBUG:2026-07-09 23:41:02,923:[generators.py:826 - gen() ] test Finished join for epoch DEBUG:2026-07-09 23:41:02,923:[generators.py:828 - gen() ] test Ready for next epoch INFO:2026-07-09 23:41:02,923:[predict.py:731 - predict() ] Writing to h5 file ... INFO:2026-07-09 23:41:03,415:[predict.py:747 - predict() ] Elapsed Time: 36.793874740600586 secs INFO:2026-07-09 23:41:03,416:[predict.py:751 - predict() ] Generating predicted profile bigWigs ... INFO:2026-07-09 23:41:03,416:[predict.py:753 - predict() ] predictions shape - (886, 1000, 2) INFO:2026-07-09 23:41:03,420:[predict.py:775 - predict() ] bigWig HEADER - [('chr1', 248956422), ('chr10', 133797422), ('chr11', 135086622), ('chr12', 133275309), ('chr13', 114364328), ('chr14', 107043718), ('chr15', 101991189), ('chr16', 90338345), ('chr17', 83257441), ('chr18', 80373285), ('chr19', 58617616), ('chr2', 242193529), ('chr20', 64444167), ('chr21', 46709983), ('chr22', 50818468), ('chr3', 198295559), ('chr4', 190214555), ('chr5', 181538259), ('chr6', 170805979), ('chr7', 159345973), ('chr8', 145138636), ('chr9', 138394717), ('chrM', 16569), ('chrX', 156040895), ('chrY', 57227415)] INFO:2026-07-09 23:41:06,071:[predict.py:801 - predict() ] min max median INFO:2026-07-09 23:41:06,071:[predict.py:806 - predict() ] mnll 0.000 0.548 0.143 INFO:2026-07-09 23:41:06,071:[predict.py:811 - predict() ] cross_entropy 0.000 0.548 0.143 INFO:2026-07-09 23:41:06,072:[predict.py:816 - predict() ] jsd 0.076 0.762 0.444 INFO:2026-07-09 23:41:06,072:[predict.py:821 - predict() ] spearman -0.416 0.943 0.587 INFO:2026-07-09 23:41:06,072:[predict.py:826 - predict() ] pearson -0.597 0.923 0.585 INFO:2026-07-09 23:41:06,072:[predict.py:831 - predict() ] mse 0.011 10.238 0.055 INFO:2026-07-09 23:41:06,072:[predict.py:833 - predict() ] ============================================== INFO:2026-07-09 23:41:06,086:[predict.py:848 - predict() ] counts pearson: [0.59440023 0.62867956] INFO:2026-07-09 23:41:06,086:[predict.py:849 - predict() ] counts spearman: [0.53738659 0.56960532] INFO:2026-07-10 15:21:16,409:[predict.py:399 - predict() ] SEQGEN Class Name: MBPNetSequenceGenerator INFO:2026-07-10 15:21:16,438:[generators.py:483 - _pad_samples() ] mode 'test': Data size (after padding 10 samples) - 896 INFO:2026-07-10 15:21:16,687:[predict.py:460 - predict() ] Writing predictions to predictions/RUNX1ETO_control_ChIPSeq/fold_2/model_split000_predictions.h5 DEBUG:2026-07-10 15:21:16,716:[generators.py:731 - _epoch_run() ] test spawning process 0, df size (448, 3) sum(num_batches) 7 DEBUG:2026-07-10 15:21:16,750:[generators.py:731 - _epoch_run() ] test spawning process 1, df size (448, 3) sum(num_batches) 14 DEBUG:2026-07-10 15:21:16,797:[generators.py:757 - _epoch_run() ] test num_batches list [7, 7] DEBUG:2026-07-10 15:21:16,797:[generators.py:770 - _epoch_run() ] test starting stealer thread 0 [7] DEBUG:2026-07-10 15:21:16,805:[generators.py:770 - _epoch_run() ] test starting stealer thread 1 [7] DEBUG:2026-07-10 15:21:19,818:[generators.py:676 - _stealer() ] test stealer thread 0 got 7 batches from mpq DEBUG:2026-07-10 15:21:19,806:[generators.py:652 - _proc_target() ] test process 0 put 7 batches into mpq DEBUG:2026-07-10 15:21:19,948:[generators.py:676 - _stealer() ] test stealer thread 1 got 7 batches from mpq DEBUG:2026-07-10 15:21:19,936:[generators.py:652 - _proc_target() ] test process 1 put 7 batches into mpq DEBUG:2026-07-10 15:21:45,827:[generators.py:814 - gen() ] test waiting to join process 0 DEBUG:2026-07-10 15:21:45,827:[generators.py:819 - gen() ] test waiting to join thread 0 DEBUG:2026-07-10 15:21:45,827:[generators.py:823 - gen() ] test join complete for process 0 DEBUG:2026-07-10 15:21:45,828:[generators.py:814 - gen() ] test waiting to join process 1 DEBUG:2026-07-10 15:21:45,828:[generators.py:819 - gen() ] test waiting to join thread 1 DEBUG:2026-07-10 15:21:45,828:[generators.py:823 - gen() ] test join complete for process 1 DEBUG:2026-07-10 15:21:45,828:[generators.py:826 - gen() ] test Finished join for epoch DEBUG:2026-07-10 15:21:45,828:[generators.py:828 - gen() ] test Ready for next epoch INFO:2026-07-10 15:21:45,828:[predict.py:731 - predict() ] Writing to h5 file ... INFO:2026-07-10 15:21:46,401:[predict.py:747 - predict() ] Elapsed Time: 29.71073269844055 secs INFO:2026-07-10 15:21:46,401:[predict.py:751 - predict() ] Generating predicted profile bigWigs ... INFO:2026-07-10 15:21:46,401:[predict.py:753 - predict() ] predictions shape - (886, 1000, 2) INFO:2026-07-10 15:21:46,405:[predict.py:775 - predict() ] bigWig HEADER - [('chr1', 248956422), ('chr10', 133797422), ('chr11', 135086622), ('chr12', 133275309), ('chr13', 114364328), ('chr14', 107043718), ('chr15', 101991189), ('chr16', 90338345), ('chr17', 83257441), ('chr18', 80373285), ('chr19', 58617616), ('chr2', 242193529), ('chr20', 64444167), ('chr21', 46709983), ('chr22', 50818468), ('chr3', 198295559), ('chr4', 190214555), ('chr5', 181538259), ('chr6', 170805979), ('chr7', 159345973), ('chr8', 145138636), ('chr9', 138394717), ('chrM', 16569), ('chrX', 156040895), ('chrY', 57227415)] INFO:2026-07-10 15:21:48,803:[predict.py:801 - predict() ] min max median INFO:2026-07-10 15:21:48,803:[predict.py:806 - predict() ] mnll 0.000 0.516 0.182 INFO:2026-07-10 15:21:48,803:[predict.py:811 - predict() ] cross_entropy 0.000 0.516 0.182 INFO:2026-07-10 15:21:48,803:[predict.py:816 - predict() ] jsd 0.073 0.773 0.499 INFO:2026-07-10 15:21:48,803:[predict.py:821 - predict() ] spearman -0.370 0.945 0.685 INFO:2026-07-10 15:21:48,804:[predict.py:826 - predict() ] pearson -0.626 0.932 0.655 INFO:2026-07-10 15:21:48,804:[predict.py:831 - predict() ] mse 0.011 10.224 0.055 INFO:2026-07-10 15:21:48,804:[predict.py:833 - predict() ] ============================================== INFO:2026-07-10 15:21:48,841:[predict.py:848 - predict() ] counts pearson: [0.62096298 0.64867683] INFO:2026-07-10 15:21:48,841:[predict.py:849 - predict() ] counts spearman: [0.55704434 0.59017325]