INFO:2026-07-09 23:03:00,595:[predict.py:399 - predict() ] SEQGEN Class Name: MBPNetSequenceGenerator INFO:2026-07-09 23:03:00,608:[generators.py:483 - _pad_samples() ] mode 'test': Data size (after padding 10 samples) - 896 INFO:2026-07-09 23:03:00,611:[predict.py:460 - predict() ] Writing predictions to predictions/RUNX1ETO_control_ChIPSeq/fold_1/model_split000_predictions.h5 DEBUG:2026-07-09 23:03:00,648:[generators.py:731 - _epoch_run() ] test spawning process 0, df size (448, 3) sum(num_batches) 7 DEBUG:2026-07-09 23:03:00,674:[generators.py:731 - _epoch_run() ] test spawning process 1, df size (448, 3) sum(num_batches) 14 DEBUG:2026-07-09 23:03:00,690:[generators.py:757 - _epoch_run() ] test num_batches list [7, 7] DEBUG:2026-07-09 23:03:00,691:[generators.py:770 - _epoch_run() ] test starting stealer thread 0 [7] DEBUG:2026-07-09 23:03:00,691:[generators.py:770 - _epoch_run() ] test starting stealer thread 1 [7] DEBUG:2026-07-09 23:03:02,471:[generators.py:652 - _proc_target() ] test process 0 put 7 batches into mpq DEBUG:2026-07-09 23:03:02,502:[generators.py:676 - _stealer() ] test stealer thread 0 got 7 batches from mpq DEBUG:2026-07-09 23:03:03,191:[generators.py:652 - _proc_target() ] test process 1 put 7 batches into mpq DEBUG:2026-07-09 23:03:03,217:[generators.py:676 - _stealer() ] test stealer thread 1 got 7 batches from mpq DEBUG:2026-07-09 23:03:29,758:[generators.py:814 - gen() ] test waiting to join process 0 DEBUG:2026-07-09 23:03:29,758:[generators.py:819 - gen() ] test waiting to join thread 0 DEBUG:2026-07-09 23:03:29,759:[generators.py:823 - gen() ] test join complete for process 0 DEBUG:2026-07-09 23:03:29,759:[generators.py:814 - gen() ] test waiting to join process 1 DEBUG:2026-07-09 23:03:29,759:[generators.py:819 - gen() ] test waiting to join thread 1 DEBUG:2026-07-09 23:03:29,759:[generators.py:823 - gen() ] test join complete for process 1 DEBUG:2026-07-09 23:03:29,759:[generators.py:826 - gen() ] test Finished join for epoch DEBUG:2026-07-09 23:03:29,759:[generators.py:828 - gen() ] test Ready for next epoch INFO:2026-07-09 23:03:29,759:[predict.py:731 - predict() ] Writing to h5 file ... INFO:2026-07-09 23:03:30,162:[predict.py:747 - predict() ] Elapsed Time: 29.548378944396973 secs INFO:2026-07-09 23:03:30,162:[predict.py:751 - predict() ] Generating predicted profile bigWigs ... INFO:2026-07-09 23:03:30,162:[predict.py:753 - predict() ] predictions shape - (886, 1000, 2) INFO:2026-07-09 23:03:30,165:[predict.py:775 - predict() ] bigWig HEADER - [('chr1', 248956422), ('chr10', 133797422), ('chr11', 135086622), ('chr12', 133275309), ('chr13', 114364328), ('chr14', 107043718), ('chr15', 101991189), ('chr16', 90338345), ('chr17', 83257441), ('chr18', 80373285), ('chr19', 58617616), ('chr2', 242193529), ('chr20', 64444167), ('chr21', 46709983), ('chr22', 50818468), ('chr3', 198295559), ('chr4', 190214555), ('chr5', 181538259), ('chr6', 170805979), ('chr7', 159345973), ('chr8', 145138636), ('chr9', 138394717), ('chrM', 16569), ('chrX', 156040895), ('chrY', 57227415)] INFO:2026-07-09 23:03:32,315:[predict.py:801 - predict() ] min max median INFO:2026-07-09 23:03:32,315:[predict.py:806 - predict() ] mnll 0.000 0.519 0.097 INFO:2026-07-09 23:03:32,315:[predict.py:811 - predict() ] cross_entropy 0.000 0.519 0.097 INFO:2026-07-09 23:03:32,315:[predict.py:816 - predict() ] jsd 0.084 0.727 0.392 INFO:2026-07-09 23:03:32,315:[predict.py:821 - predict() ] spearman -0.632 0.951 0.448 INFO:2026-07-09 23:03:32,315:[predict.py:826 - predict() ] pearson -0.788 0.908 0.498 INFO:2026-07-09 23:03:32,316:[predict.py:831 - predict() ] mse 0.011 10.253 0.056 INFO:2026-07-09 23:03:32,316:[predict.py:833 - predict() ] ============================================== INFO:2026-07-09 23:03:32,324:[predict.py:848 - predict() ] counts pearson: [0.59507791 0.61106435] INFO:2026-07-09 23:03:32,324:[predict.py:849 - predict() ] counts spearman: [0.53442524 0.5536823 ] INFO:2026-07-10 15:12:14,480:[predict.py:399 - predict() ] SEQGEN Class Name: MBPNetSequenceGenerator INFO:2026-07-10 15:12:14,510:[generators.py:483 - _pad_samples() ] mode 'test': Data size (after padding 10 samples) - 896 INFO:2026-07-10 15:12:14,526:[predict.py:460 - predict() ] Writing predictions to predictions/RUNX1ETO_control_ChIPSeq/fold_1/model_split000_predictions.h5 DEBUG:2026-07-10 15:12:14,612:[generators.py:731 - _epoch_run() ] test spawning process 0, df size (448, 3) sum(num_batches) 7 DEBUG:2026-07-10 15:12:14,656:[generators.py:731 - _epoch_run() ] test spawning process 1, df size (448, 3) sum(num_batches) 14 DEBUG:2026-07-10 15:12:14,679:[generators.py:757 - _epoch_run() ] test num_batches list [7, 7] DEBUG:2026-07-10 15:12:14,680:[generators.py:770 - _epoch_run() ] test starting stealer thread 0 [7] DEBUG:2026-07-10 15:12:14,690:[generators.py:770 - _epoch_run() ] test starting stealer thread 1 [7] DEBUG:2026-07-10 15:12:16,802:[generators.py:676 - _stealer() ] test stealer thread 1 got 7 batches from mpq DEBUG:2026-07-10 15:12:16,781:[generators.py:652 - _proc_target() ] test process 1 put 7 batches into mpq DEBUG:2026-07-10 15:12:16,977:[generators.py:652 - _proc_target() ] test process 0 put 7 batches into mpq DEBUG:2026-07-10 15:12:17,013:[generators.py:676 - _stealer() ] test stealer thread 0 got 7 batches from mpq DEBUG:2026-07-10 15:12:47,702:[generators.py:814 - gen() ] test waiting to join process 0 DEBUG:2026-07-10 15:12:47,702:[generators.py:819 - gen() ] test waiting to join thread 0 DEBUG:2026-07-10 15:12:47,702:[generators.py:823 - gen() ] test join complete for process 0 DEBUG:2026-07-10 15:12:47,703:[generators.py:814 - gen() ] test waiting to join process 1 DEBUG:2026-07-10 15:12:47,703:[generators.py:819 - gen() ] test waiting to join thread 1 DEBUG:2026-07-10 15:12:47,703:[generators.py:823 - gen() ] test join complete for process 1 DEBUG:2026-07-10 15:12:47,703:[generators.py:826 - gen() ] test Finished join for epoch DEBUG:2026-07-10 15:12:47,703:[generators.py:828 - gen() ] test Ready for next epoch INFO:2026-07-10 15:12:47,703:[predict.py:731 - predict() ] Writing to h5 file ... INFO:2026-07-10 15:12:48,375:[predict.py:747 - predict() ] Elapsed Time: 33.84349846839905 secs INFO:2026-07-10 15:12:48,375:[predict.py:751 - predict() ] Generating predicted profile bigWigs ... INFO:2026-07-10 15:12:48,375:[predict.py:753 - predict() ] predictions shape - (886, 1000, 2) INFO:2026-07-10 15:12:48,381:[predict.py:775 - predict() ] bigWig HEADER - [('chr1', 248956422), ('chr10', 133797422), ('chr11', 135086622), ('chr12', 133275309), ('chr13', 114364328), ('chr14', 107043718), ('chr15', 101991189), ('chr16', 90338345), ('chr17', 83257441), ('chr18', 80373285), ('chr19', 58617616), ('chr2', 242193529), ('chr20', 64444167), ('chr21', 46709983), ('chr22', 50818468), ('chr3', 198295559), ('chr4', 190214555), ('chr5', 181538259), ('chr6', 170805979), ('chr7', 159345973), ('chr8', 145138636), ('chr9', 138394717), ('chrM', 16569), ('chrX', 156040895), ('chrY', 57227415)] INFO:2026-07-10 15:12:51,475:[predict.py:801 - predict() ] min max median INFO:2026-07-10 15:12:51,476:[predict.py:806 - predict() ] mnll 0.000 0.537 0.148 INFO:2026-07-10 15:12:51,476:[predict.py:811 - predict() ] cross_entropy 0.000 0.537 0.148 INFO:2026-07-10 15:12:51,477:[predict.py:816 - predict() ] jsd 0.084 0.730 0.452 INFO:2026-07-10 15:12:51,477:[predict.py:821 - predict() ] spearman -0.455 0.940 0.601 INFO:2026-07-10 15:12:51,477:[predict.py:826 - predict() ] pearson -0.623 0.921 0.594 INFO:2026-07-10 15:12:51,478:[predict.py:831 - predict() ] mse 0.011 10.247 0.055 INFO:2026-07-10 15:12:51,478:[predict.py:833 - predict() ] ============================================== INFO:2026-07-10 15:12:51,608:[predict.py:848 - predict() ] counts pearson: [0.6022115 0.62513921] INFO:2026-07-10 15:12:51,608:[predict.py:849 - predict() ] counts spearman: [0.53814763 0.56565033]