INFO:2026-05-26 11:00:21,295:[predict.py:399 - predict() ] SEQGEN Class Name: MBPNetSequenceGenerator INFO:2026-05-26 11:00:21,314:[generators.py:483 - _pad_samples() ] mode 'test': Data size (after padding 29 samples) - 5120 INFO:2026-05-26 11:00:21,344:[predict.py:460 - predict() ] Writing predictions to predictions/Kasumi_AML1_C19/fold_0/model_split000_predictions.h5 DEBUG:2026-05-26 11:00:21,360:[generators.py:731 - _epoch_run() ] test spawning process 0, df size (2560, 3) sum(num_batches) 40 DEBUG:2026-05-26 11:00:21,390:[generators.py:731 - _epoch_run() ] test spawning process 1, df size (2560, 3) sum(num_batches) 80 DEBUG:2026-05-26 11:00:21,415:[generators.py:757 - _epoch_run() ] test num_batches list [40, 40] DEBUG:2026-05-26 11:00:21,415:[generators.py:770 - _epoch_run() ] test starting stealer thread 0 [40] DEBUG:2026-05-26 11:00:21,430:[generators.py:770 - _epoch_run() ] test starting stealer thread 1 [40] DEBUG:2026-05-26 11:00:29,013:[generators.py:652 - _proc_target() ] test process 0 put 40 batches into mpq DEBUG:2026-05-26 11:00:29,025:[generators.py:652 - _proc_target() ] test process 1 put 40 batches into mpq DEBUG:2026-05-26 11:00:29,069:[generators.py:676 - _stealer() ] test stealer thread 0 got 40 batches from mpq DEBUG:2026-05-26 11:00:29,074:[generators.py:676 - _stealer() ] test stealer thread 1 got 40 batches from mpq DEBUG:2026-05-26 11:01:06,730:[generators.py:814 - gen() ] test waiting to join process 0 DEBUG:2026-05-26 11:01:06,730:[generators.py:819 - gen() ] test waiting to join thread 0 DEBUG:2026-05-26 11:01:06,730:[generators.py:823 - gen() ] test join complete for process 0 DEBUG:2026-05-26 11:01:06,730:[generators.py:814 - gen() ] test waiting to join process 1 DEBUG:2026-05-26 11:01:06,730:[generators.py:819 - gen() ] test waiting to join thread 1 DEBUG:2026-05-26 11:01:06,730:[generators.py:823 - gen() ] test join complete for process 1 DEBUG:2026-05-26 11:01:06,730:[generators.py:826 - gen() ] test Finished join for epoch DEBUG:2026-05-26 11:01:06,730:[generators.py:828 - gen() ] test Ready for next epoch INFO:2026-05-26 11:01:06,731:[predict.py:731 - predict() ] Writing to h5 file ... INFO:2026-05-26 11:01:09,591:[predict.py:747 - predict() ] Elapsed Time: 48.244359493255615 secs INFO:2026-05-26 11:01:09,592:[predict.py:751 - predict() ] Generating predicted profile bigWigs ... INFO:2026-05-26 11:01:09,592:[predict.py:753 - predict() ] predictions shape - (5091, 1000, 2) INFO:2026-05-26 11:01:09,595:[predict.py:775 - predict() ] bigWig HEADER - [('chr1', 248956422), ('chr10', 133797422), ('chr11', 135086622), ('chr12', 133275309), ('chr13', 114364328), ('chr14', 107043718), ('chr15', 101991189), ('chr16', 90338345), ('chr17', 83257441), ('chr18', 80373285), ('chr19', 58617616), ('chr2', 242193529), ('chr20', 64444167), ('chr21', 46709983), ('chr22', 50818468), ('chr3', 198295559), ('chr4', 190214555), ('chr5', 181538259), ('chr6', 170805979), ('chr7', 159345973), ('chr8', 145138636), ('chr9', 138394717), ('chrM', 16569), ('chrX', 156040895), ('chrY', 57227415)] INFO:2026-05-26 11:01:23,963:[predict.py:801 - predict() ] min max median INFO:2026-05-26 11:01:23,964:[predict.py:806 - predict() ] mnll 0.000 0.564 0.198 INFO:2026-05-26 11:01:23,965:[predict.py:811 - predict() ] cross_entropy 0.000 0.564 0.198 INFO:2026-05-26 11:01:23,965:[predict.py:816 - predict() ] jsd 0.171 0.757 0.538 INFO:2026-05-26 11:01:23,966:[predict.py:821 - predict() ] spearman -0.231 0.957 0.739 INFO:2026-05-26 11:01:23,967:[predict.py:826 - predict() ] pearson -0.311 0.947 0.641 INFO:2026-05-26 11:01:23,967:[predict.py:831 - predict() ] mse 0.008 1.107 0.042 INFO:2026-05-26 11:01:23,967:[predict.py:833 - predict() ] ============================================== INFO:2026-05-26 11:01:23,998:[predict.py:848 - predict() ] counts pearson: [0.49727418 0.49821837] INFO:2026-05-26 11:01:23,999:[predict.py:849 - predict() ] counts spearman: [0.49674603 0.4948526 ] INFO:2026-05-28 11:50:04,356:[predict.py:399 - predict() ] SEQGEN Class Name: MBPNetSequenceGenerator INFO:2026-05-28 11:50:04,395:[generators.py:483 - _pad_samples() ] mode 'test': Data size (after padding 29 samples) - 5120 INFO:2026-05-28 11:50:04,431:[predict.py:460 - predict() ] Writing predictions to predictions/Kasumi_AML1_C19/fold_0/model_split000_predictions.h5 DEBUG:2026-05-28 11:50:04,443:[generators.py:731 - _epoch_run() ] test spawning process 0, df size (2560, 3) sum(num_batches) 40 DEBUG:2026-05-28 11:50:04,473:[generators.py:731 - _epoch_run() ] test spawning process 1, df size (2560, 3) sum(num_batches) 80 DEBUG:2026-05-28 11:50:04,498:[generators.py:757 - _epoch_run() ] test num_batches list [40, 40] DEBUG:2026-05-28 11:50:04,498:[generators.py:770 - _epoch_run() ] test starting stealer thread 0 [40] DEBUG:2026-05-28 11:50:04,499:[generators.py:770 - _epoch_run() ] test starting stealer thread 1 [40] DEBUG:2026-05-28 11:50:10,974:[generators.py:652 - _proc_target() ] test process 0 put 40 batches into mpq DEBUG:2026-05-28 11:50:10,990:[generators.py:676 - _stealer() ] test stealer thread 0 got 40 batches from mpq DEBUG:2026-05-28 11:50:11,612:[generators.py:652 - _proc_target() ] test process 1 put 40 batches into mpq DEBUG:2026-05-28 11:50:11,701:[generators.py:676 - _stealer() ] test stealer thread 1 got 40 batches from mpq DEBUG:2026-05-28 11:50:56,443:[generators.py:814 - gen() ] test waiting to join process 0 DEBUG:2026-05-28 11:50:56,443:[generators.py:819 - gen() ] test waiting to join thread 0 DEBUG:2026-05-28 11:50:56,444:[generators.py:823 - gen() ] test join complete for process 0 DEBUG:2026-05-28 11:50:56,444:[generators.py:814 - gen() ] test waiting to join process 1 DEBUG:2026-05-28 11:50:56,444:[generators.py:819 - gen() ] test waiting to join thread 1 DEBUG:2026-05-28 11:50:56,444:[generators.py:823 - gen() ] test join complete for process 1 DEBUG:2026-05-28 11:50:56,444:[generators.py:826 - gen() ] test Finished join for epoch DEBUG:2026-05-28 11:50:56,444:[generators.py:828 - gen() ] test Ready for next epoch INFO:2026-05-28 11:50:56,444:[predict.py:731 - predict() ] Writing to h5 file ... INFO:2026-05-28 11:50:58,955:[predict.py:747 - predict() ] Elapsed Time: 54.52125954627991 secs INFO:2026-05-28 11:50:58,955:[predict.py:751 - predict() ] Generating predicted profile bigWigs ... INFO:2026-05-28 11:50:58,955:[predict.py:753 - predict() ] predictions shape - (5091, 1000, 2) INFO:2026-05-28 11:50:58,958:[predict.py:775 - predict() ] bigWig HEADER - [('chr1', 248956422), ('chr10', 133797422), ('chr11', 135086622), ('chr12', 133275309), ('chr13', 114364328), ('chr14', 107043718), ('chr15', 101991189), ('chr16', 90338345), ('chr17', 83257441), ('chr18', 80373285), ('chr19', 58617616), ('chr2', 242193529), ('chr20', 64444167), ('chr21', 46709983), ('chr22', 50818468), ('chr3', 198295559), ('chr4', 190214555), ('chr5', 181538259), ('chr6', 170805979), ('chr7', 159345973), ('chr8', 145138636), ('chr9', 138394717), ('chrM', 16569), ('chrX', 156040895), ('chrY', 57227415)] INFO:2026-05-28 11:51:12,432:[predict.py:801 - predict() ] min max median INFO:2026-05-28 11:51:12,433:[predict.py:806 - predict() ] mnll 0.000 0.566 0.197 INFO:2026-05-28 11:51:12,433:[predict.py:811 - predict() ] cross_entropy 0.000 0.566 0.197 INFO:2026-05-28 11:51:12,433:[predict.py:816 - predict() ] jsd 0.167 0.767 0.539 INFO:2026-05-28 11:51:12,434:[predict.py:821 - predict() ] spearman -0.238 0.948 0.739 INFO:2026-05-28 11:51:12,434:[predict.py:826 - predict() ] pearson -0.347 0.948 0.638 INFO:2026-05-28 11:51:12,434:[predict.py:831 - predict() ] mse 0.008 35.758 0.042 INFO:2026-05-28 11:51:12,434:[predict.py:833 - predict() ] ============================================== INFO:2026-05-28 11:51:12,547:[predict.py:848 - predict() ] counts pearson: [0.49526124 0.49508191] INFO:2026-05-28 11:51:12,547:[predict.py:849 - predict() ] counts spearman: [0.49254048 0.48910091]