INFO:2026-07-10 00:06:17,436:[predict.py:399 - predict() ] SEQGEN Class Name: MBPNetSequenceGenerator INFO:2026-07-10 00:06:17,448:[generators.py:483 - _pad_samples() ] mode 'test': Data size (after padding 34 samples) - 128 INFO:2026-07-10 00:06:17,451:[predict.py:460 - predict() ] Writing predictions to predictions/Kasumi-1_RUNX1/fold_1/model_split000_predictions.h5 DEBUG:2026-07-10 00:06:17,466:[generators.py:731 - _epoch_run() ] test spawning process 0, df size (64, 3) sum(num_batches) 1 DEBUG:2026-07-10 00:06:17,534:[generators.py:731 - _epoch_run() ] test spawning process 1, df size (64, 3) sum(num_batches) 2 DEBUG:2026-07-10 00:06:17,599:[generators.py:757 - _epoch_run() ] test num_batches list [1, 1] DEBUG:2026-07-10 00:06:17,599:[generators.py:770 - _epoch_run() ] test starting stealer thread 0 [1] DEBUG:2026-07-10 00:06:17,599:[generators.py:770 - _epoch_run() ] test starting stealer thread 1 [1] DEBUG:2026-07-10 00:06:18,062:[generators.py:652 - _proc_target() ] test process 1 put 1 batches into mpq DEBUG:2026-07-10 00:06:18,090:[generators.py:676 - _stealer() ] test stealer thread 1 got 1 batches from mpq DEBUG:2026-07-10 00:06:18,131:[generators.py:652 - _proc_target() ] test process 0 put 1 batches into mpq DEBUG:2026-07-10 00:06:18,167:[generators.py:676 - _stealer() ] test stealer thread 0 got 1 batches from mpq DEBUG:2026-07-10 00:10:19,714:[generators.py:814 - gen() ] test waiting to join process 0 DEBUG:2026-07-10 00:10:19,714:[generators.py:819 - gen() ] test waiting to join thread 0 DEBUG:2026-07-10 00:10:19,714:[generators.py:823 - gen() ] test join complete for process 0 DEBUG:2026-07-10 00:10:19,714:[generators.py:814 - gen() ] test waiting to join process 1 DEBUG:2026-07-10 00:10:19,714:[generators.py:819 - gen() ] test waiting to join thread 1 DEBUG:2026-07-10 00:10:19,714:[generators.py:823 - gen() ] test join complete for process 1 DEBUG:2026-07-10 00:10:19,714:[generators.py:826 - gen() ] test Finished join for epoch DEBUG:2026-07-10 00:10:19,714:[generators.py:828 - gen() ] test Ready for next epoch INFO:2026-07-10 00:10:19,714:[predict.py:731 - predict() ] Writing to h5 file ... INFO:2026-07-10 00:10:19,767:[predict.py:747 - predict() ] Elapsed Time: 242.3139090538025 secs INFO:2026-07-10 00:10:19,767:[predict.py:751 - predict() ] Generating predicted profile bigWigs ... INFO:2026-07-10 00:10:19,767:[predict.py:753 - predict() ] predictions shape - (94, 1000, 2) INFO:2026-07-10 00:10:19,771:[predict.py:775 - predict() ] bigWig HEADER - [('chr1', 248956422), ('chr10', 133797422), ('chr11', 135086622), ('chr12', 133275309), ('chr13', 114364328), ('chr14', 107043718), ('chr15', 101991189), ('chr16', 90338345), ('chr17', 83257441), ('chr18', 80373285), ('chr19', 58617616), ('chr2', 242193529), ('chr20', 64444167), ('chr21', 46709983), ('chr22', 50818468), ('chr3', 198295559), ('chr4', 190214555), ('chr5', 181538259), ('chr6', 170805979), ('chr7', 159345973), ('chr8', 145138636), ('chr9', 138394717), ('chrM', 16569), ('chrX', 156040895), ('chrY', 57227415)] INFO:2026-07-10 00:10:19,991:[predict.py:801 - predict() ] min max median INFO:2026-07-10 00:10:19,992:[predict.py:806 - predict() ] mnll 0.000 0.801 0.209 INFO:2026-07-10 00:10:19,992:[predict.py:811 - predict() ] cross_entropy 0.000 0.801 0.209 INFO:2026-07-10 00:10:19,992:[predict.py:816 - predict() ] jsd 0.000 0.579 0.361 INFO:2026-07-10 00:10:19,992:[predict.py:821 - predict() ] spearman -0.298 0.857 0.290 INFO:2026-07-10 00:10:19,992:[predict.py:826 - predict() ] pearson -0.454 0.847 0.421 INFO:2026-07-10 00:10:19,992:[predict.py:831 - predict() ] mse 0.014 16.399 0.070 INFO:2026-07-10 00:10:19,992:[predict.py:833 - predict() ] ============================================== INFO:2026-07-10 00:10:20,000:[predict.py:848 - predict() ] counts pearson: [0.32389871 0.38111265] INFO:2026-07-10 00:10:20,001:[predict.py:849 - predict() ] counts spearman: [0.05969621 0.08582413] INFO:2026-07-10 15:03:51,615:[predict.py:399 - predict() ] SEQGEN Class Name: MBPNetSequenceGenerator INFO:2026-07-10 15:03:51,631:[generators.py:483 - _pad_samples() ] mode 'test': Data size (after padding 34 samples) - 128 INFO:2026-07-10 15:03:51,651:[predict.py:460 - predict() ] Writing predictions to predictions/Kasumi-1_RUNX1/fold_1/model_split000_predictions.h5 DEBUG:2026-07-10 15:03:51,798:[generators.py:731 - _epoch_run() ] test spawning process 0, df size (64, 3) sum(num_batches) 1 DEBUG:2026-07-10 15:03:51,885:[generators.py:731 - _epoch_run() ] test spawning process 1, df size (64, 3) sum(num_batches) 2 DEBUG:2026-07-10 15:03:52,001:[generators.py:757 - _epoch_run() ] test num_batches list [1, 1] DEBUG:2026-07-10 15:03:52,001:[generators.py:770 - _epoch_run() ] test starting stealer thread 0 [1] DEBUG:2026-07-10 15:03:52,010:[generators.py:770 - _epoch_run() ] test starting stealer thread 1 [1] DEBUG:2026-07-10 15:03:52,293:[generators.py:652 - _proc_target() ] test process 0 put 1 batches into mpq DEBUG:2026-07-10 15:03:52,331:[generators.py:676 - _stealer() ] test stealer thread 0 got 1 batches from mpq DEBUG:2026-07-10 15:03:52,470:[generators.py:652 - _proc_target() ] test process 1 put 1 batches into mpq DEBUG:2026-07-10 15:03:52,513:[generators.py:676 - _stealer() ] test stealer thread 1 got 1 batches from mpq DEBUG:2026-07-10 15:12:07,452:[generators.py:814 - gen() ] test waiting to join process 0 DEBUG:2026-07-10 15:12:07,452:[generators.py:819 - gen() ] test waiting to join thread 0 DEBUG:2026-07-10 15:12:07,452:[generators.py:823 - gen() ] test join complete for process 0 DEBUG:2026-07-10 15:12:07,452:[generators.py:814 - gen() ] test waiting to join process 1 DEBUG:2026-07-10 15:12:07,452:[generators.py:819 - gen() ] test waiting to join thread 1 DEBUG:2026-07-10 15:12:07,452:[generators.py:823 - gen() ] test join complete for process 1 DEBUG:2026-07-10 15:12:07,452:[generators.py:826 - gen() ] test Finished join for epoch DEBUG:2026-07-10 15:12:07,452:[generators.py:828 - gen() ] test Ready for next epoch INFO:2026-07-10 15:12:07,452:[predict.py:731 - predict() ] Writing to h5 file ... INFO:2026-07-10 15:12:07,492:[predict.py:747 - predict() ] Elapsed Time: 495.8391649723053 secs INFO:2026-07-10 15:12:07,492:[predict.py:751 - predict() ] Generating predicted profile bigWigs ... INFO:2026-07-10 15:12:07,492:[predict.py:753 - predict() ] predictions shape - (94, 1000, 2) INFO:2026-07-10 15:12:07,495:[predict.py:775 - predict() ] bigWig HEADER - [('chr1', 248956422), ('chr10', 133797422), ('chr11', 135086622), ('chr12', 133275309), ('chr13', 114364328), ('chr14', 107043718), ('chr15', 101991189), ('chr16', 90338345), ('chr17', 83257441), ('chr18', 80373285), ('chr19', 58617616), ('chr2', 242193529), ('chr20', 64444167), ('chr21', 46709983), ('chr22', 50818468), ('chr3', 198295559), ('chr4', 190214555), ('chr5', 181538259), ('chr6', 170805979), ('chr7', 159345973), ('chr8', 145138636), ('chr9', 138394717), ('chrM', 16569), ('chrX', 156040895), ('chrY', 57227415)] INFO:2026-07-10 15:12:07,725:[predict.py:801 - predict() ] min max median INFO:2026-07-10 15:12:07,725:[predict.py:806 - predict() ] mnll 0.000 0.808 0.207 INFO:2026-07-10 15:12:07,726:[predict.py:811 - predict() ] cross_entropy 0.000 0.808 0.207 INFO:2026-07-10 15:12:07,726:[predict.py:816 - predict() ] jsd 0.000 0.607 0.382 INFO:2026-07-10 15:12:07,726:[predict.py:821 - predict() ] spearman -0.348 0.872 0.336 INFO:2026-07-10 15:12:07,726:[predict.py:826 - predict() ] pearson -0.523 0.857 0.455 INFO:2026-07-10 15:12:07,726:[predict.py:831 - predict() ] mse 0.015 16.310 0.069 INFO:2026-07-10 15:12:07,726:[predict.py:833 - predict() ] ============================================== INFO:2026-07-10 15:12:07,733:[predict.py:848 - predict() ] counts pearson: [0.4052956 0.4234669] INFO:2026-07-10 15:12:07,733:[predict.py:849 - predict() ] counts spearman: [0.15467829 0.14992485]