INFO:2026-07-09 23:03:56,870:[predict.py:399 - predict() ] SEQGEN Class Name: MBPNetSequenceGenerator INFO:2026-07-09 23:03:56,884:[generators.py:483 - _pad_samples() ] mode 'test': Data size (after padding 34 samples) - 128 INFO:2026-07-09 23:03:56,889:[predict.py:460 - predict() ] Writing predictions to predictions/Kasumi-1_RUNX1/fold_0/model_split000_predictions.h5 DEBUG:2026-07-09 23:03:56,907:[generators.py:731 - _epoch_run() ] test spawning process 0, df size (64, 3) sum(num_batches) 1 DEBUG:2026-07-09 23:03:56,947:[generators.py:731 - _epoch_run() ] test spawning process 1, df size (64, 3) sum(num_batches) 2 DEBUG:2026-07-09 23:03:56,978:[generators.py:757 - _epoch_run() ] test num_batches list [1, 1] DEBUG:2026-07-09 23:03:56,978:[generators.py:770 - _epoch_run() ] test starting stealer thread 0 [1] DEBUG:2026-07-09 23:03:56,978:[generators.py:770 - _epoch_run() ] test starting stealer thread 1 [1] DEBUG:2026-07-09 23:03:57,426:[generators.py:652 - _proc_target() ] test process 1 put 1 batches into mpq DEBUG:2026-07-09 23:03:57,447:[generators.py:676 - _stealer() ] test stealer thread 1 got 1 batches from mpq DEBUG:2026-07-09 23:03:57,616:[generators.py:652 - _proc_target() ] test process 0 put 1 batches into mpq DEBUG:2026-07-09 23:03:57,635:[generators.py:676 - _stealer() ] test stealer thread 0 got 1 batches from mpq DEBUG:2026-07-09 23:04:23,252:[generators.py:814 - gen() ] test waiting to join process 0 DEBUG:2026-07-09 23:04:23,252:[generators.py:819 - gen() ] test waiting to join thread 0 DEBUG:2026-07-09 23:04:23,253:[generators.py:823 - gen() ] test join complete for process 0 DEBUG:2026-07-09 23:04:23,253:[generators.py:814 - gen() ] test waiting to join process 1 DEBUG:2026-07-09 23:04:23,253:[generators.py:819 - gen() ] test waiting to join thread 1 DEBUG:2026-07-09 23:04:23,253:[generators.py:823 - gen() ] test join complete for process 1 DEBUG:2026-07-09 23:04:23,253:[generators.py:826 - gen() ] test Finished join for epoch DEBUG:2026-07-09 23:04:23,253:[generators.py:828 - gen() ] test Ready for next epoch INFO:2026-07-09 23:04:23,253:[predict.py:731 - predict() ] Writing to h5 file ... INFO:2026-07-09 23:04:23,346:[predict.py:747 - predict() ] Elapsed Time: 26.455666542053223 secs INFO:2026-07-09 23:04:23,346:[predict.py:751 - predict() ] Generating predicted profile bigWigs ... INFO:2026-07-09 23:04:23,346:[predict.py:753 - predict() ] predictions shape - (94, 1000, 2) INFO:2026-07-09 23:04:23,350:[predict.py:775 - predict() ] bigWig HEADER - [('chr1', 248956422), ('chr10', 133797422), ('chr11', 135086622), ('chr12', 133275309), ('chr13', 114364328), ('chr14', 107043718), ('chr15', 101991189), ('chr16', 90338345), ('chr17', 83257441), ('chr18', 80373285), ('chr19', 58617616), ('chr2', 242193529), ('chr20', 64444167), ('chr21', 46709983), ('chr22', 50818468), ('chr3', 198295559), ('chr4', 190214555), ('chr5', 181538259), ('chr6', 170805979), ('chr7', 159345973), ('chr8', 145138636), ('chr9', 138394717), ('chrM', 16569), ('chrX', 156040895), ('chrY', 57227415)] INFO:2026-07-09 23:04:23,934:[predict.py:801 - predict() ] min max median INFO:2026-07-09 23:04:23,934:[predict.py:806 - predict() ] mnll 0.000 0.950 0.384 INFO:2026-07-09 23:04:23,934:[predict.py:811 - predict() ] cross_entropy 0.000 0.951 0.388 INFO:2026-07-09 23:04:23,934:[predict.py:816 - predict() ] jsd 0.154 0.710 0.468 INFO:2026-07-09 23:04:23,934:[predict.py:821 - predict() ] spearman -0.126 0.895 0.581 INFO:2026-07-09 23:04:23,934:[predict.py:826 - predict() ] pearson -0.262 0.926 0.539 INFO:2026-07-09 23:04:23,935:[predict.py:831 - predict() ] mse 0.017 5.393 0.063 INFO:2026-07-09 23:04:23,935:[predict.py:833 - predict() ] ============================================== INFO:2026-07-09 23:04:23,947:[predict.py:848 - predict() ] counts pearson: [0.70118225 0.69834597] INFO:2026-07-09 23:04:23,947:[predict.py:849 - predict() ] counts spearman: [0.6350084 0.6288663] INFO:2026-07-10 15:27:44,367:[predict.py:399 - predict() ] SEQGEN Class Name: MBPNetSequenceGenerator INFO:2026-07-10 15:27:44,389:[generators.py:483 - _pad_samples() ] mode 'test': Data size (after padding 34 samples) - 128 INFO:2026-07-10 15:27:44,395:[predict.py:460 - predict() ] Writing predictions to predictions/Kasumi-1_RUNX1/fold_0/model_split000_predictions.h5 DEBUG:2026-07-10 15:27:44,415:[generators.py:731 - _epoch_run() ] test spawning process 0, df size (64, 3) sum(num_batches) 1 DEBUG:2026-07-10 15:27:44,441:[generators.py:731 - _epoch_run() ] test spawning process 1, df size (64, 3) sum(num_batches) 2 DEBUG:2026-07-10 15:27:44,470:[generators.py:757 - _epoch_run() ] test num_batches list [1, 1] DEBUG:2026-07-10 15:27:44,470:[generators.py:770 - _epoch_run() ] test starting stealer thread 0 [1] DEBUG:2026-07-10 15:27:44,478:[generators.py:770 - _epoch_run() ] test starting stealer thread 1 [1] DEBUG:2026-07-10 15:27:44,887:[generators.py:652 - _proc_target() ] test process 1 put 1 batches into mpq DEBUG:2026-07-10 15:27:44,915:[generators.py:676 - _stealer() ] test stealer thread 1 got 1 batches from mpq DEBUG:2026-07-10 15:27:45,092:[generators.py:652 - _proc_target() ] test process 0 put 1 batches into mpq DEBUG:2026-07-10 15:27:45,145:[generators.py:676 - _stealer() ] test stealer thread 0 got 1 batches from mpq DEBUG:2026-07-10 15:28:03,751:[generators.py:814 - gen() ] test waiting to join process 0 DEBUG:2026-07-10 15:28:03,751:[generators.py:819 - gen() ] test waiting to join thread 0 DEBUG:2026-07-10 15:28:03,752:[generators.py:823 - gen() ] test join complete for process 0 DEBUG:2026-07-10 15:28:03,752:[generators.py:814 - gen() ] test waiting to join process 1 DEBUG:2026-07-10 15:28:03,752:[generators.py:819 - gen() ] test waiting to join thread 1 DEBUG:2026-07-10 15:28:03,752:[generators.py:823 - gen() ] test join complete for process 1 DEBUG:2026-07-10 15:28:03,752:[generators.py:826 - gen() ] test Finished join for epoch DEBUG:2026-07-10 15:28:03,752:[generators.py:828 - gen() ] test Ready for next epoch INFO:2026-07-10 15:28:03,752:[predict.py:731 - predict() ] Writing to h5 file ... INFO:2026-07-10 15:28:03,820:[predict.py:747 - predict() ] Elapsed Time: 19.422807693481445 secs INFO:2026-07-10 15:28:03,820:[predict.py:751 - predict() ] Generating predicted profile bigWigs ... INFO:2026-07-10 15:28:03,820:[predict.py:753 - predict() ] predictions shape - (94, 1000, 2) INFO:2026-07-10 15:28:03,824:[predict.py:775 - predict() ] bigWig HEADER - [('chr1', 248956422), ('chr10', 133797422), ('chr11', 135086622), ('chr12', 133275309), ('chr13', 114364328), ('chr14', 107043718), ('chr15', 101991189), ('chr16', 90338345), ('chr17', 83257441), ('chr18', 80373285), ('chr19', 58617616), ('chr2', 242193529), ('chr20', 64444167), ('chr21', 46709983), ('chr22', 50818468), ('chr3', 198295559), ('chr4', 190214555), ('chr5', 181538259), ('chr6', 170805979), ('chr7', 159345973), ('chr8', 145138636), ('chr9', 138394717), ('chrM', 16569), ('chrX', 156040895), ('chrY', 57227415)] INFO:2026-07-10 15:28:04,123:[predict.py:801 - predict() ] min max median INFO:2026-07-10 15:28:04,123:[predict.py:806 - predict() ] mnll 0.000 0.944 0.367 INFO:2026-07-10 15:28:04,123:[predict.py:811 - predict() ] cross_entropy 0.000 0.944 0.367 INFO:2026-07-10 15:28:04,123:[predict.py:816 - predict() ] jsd 0.146 0.704 0.463 INFO:2026-07-10 15:28:04,123:[predict.py:821 - predict() ] spearman -0.108 0.867 0.578 INFO:2026-07-10 15:28:04,123:[predict.py:826 - predict() ] pearson -0.183 0.920 0.497 INFO:2026-07-10 15:28:04,124:[predict.py:831 - predict() ] mse 0.013 7.420 0.064 INFO:2026-07-10 15:28:04,124:[predict.py:833 - predict() ] ============================================== INFO:2026-07-10 15:28:06,474:[predict.py:848 - predict() ] counts pearson: [0.70185551 0.69394485] INFO:2026-07-10 15:28:06,475:[predict.py:849 - predict() ] counts spearman: [0.60900106 0.58297684]