INFO:2026-07-09 23:05:55,148:[predict.py:399 - predict() ] SEQGEN Class Name: MBPNetSequenceGenerator INFO:2026-07-09 23:05:55,159:[generators.py:483 - _pad_samples() ] mode 'test': Data size (after padding 34 samples) - 256 INFO:2026-07-09 23:05:55,163:[predict.py:460 - predict() ] Writing predictions to predictions/Kasumi-1_AE/fold_1/model_split000_predictions.h5 DEBUG:2026-07-09 23:05:55,180:[generators.py:731 - _epoch_run() ] test spawning process 0, df size (128, 3) sum(num_batches) 2 DEBUG:2026-07-09 23:05:55,249:[generators.py:731 - _epoch_run() ] test spawning process 1, df size (128, 3) sum(num_batches) 4 DEBUG:2026-07-09 23:05:55,314:[generators.py:757 - _epoch_run() ] test num_batches list [2, 2] DEBUG:2026-07-09 23:05:55,314:[generators.py:770 - _epoch_run() ] test starting stealer thread 0 [2] DEBUG:2026-07-09 23:05:55,315:[generators.py:770 - _epoch_run() ] test starting stealer thread 1 [2] DEBUG:2026-07-09 23:05:55,973:[generators.py:652 - _proc_target() ] test process 0 put 2 batches into mpq DEBUG:2026-07-09 23:05:55,997:[generators.py:676 - _stealer() ] test stealer thread 0 got 2 batches from mpq DEBUG:2026-07-09 23:05:56,312:[generators.py:652 - _proc_target() ] test process 1 put 2 batches into mpq DEBUG:2026-07-09 23:05:56,337:[generators.py:676 - _stealer() ] test stealer thread 1 got 2 batches from mpq DEBUG:2026-07-09 23:15:02,424:[generators.py:814 - gen() ] test waiting to join process 0 DEBUG:2026-07-09 23:15:02,425:[generators.py:819 - gen() ] test waiting to join thread 0 DEBUG:2026-07-09 23:15:02,425:[generators.py:823 - gen() ] test join complete for process 0 DEBUG:2026-07-09 23:15:02,425:[generators.py:814 - gen() ] test waiting to join process 1 DEBUG:2026-07-09 23:15:02,425:[generators.py:819 - gen() ] test waiting to join thread 1 DEBUG:2026-07-09 23:15:02,425:[generators.py:823 - gen() ] test join complete for process 1 DEBUG:2026-07-09 23:15:02,425:[generators.py:826 - gen() ] test Finished join for epoch DEBUG:2026-07-09 23:15:02,425:[generators.py:828 - gen() ] test Ready for next epoch INFO:2026-07-09 23:15:02,425:[predict.py:731 - predict() ] Writing to h5 file ... INFO:2026-07-09 23:15:02,503:[predict.py:747 - predict() ] Elapsed Time: 547.3375015258789 secs INFO:2026-07-09 23:15:02,503:[predict.py:751 - predict() ] Generating predicted profile bigWigs ... INFO:2026-07-09 23:15:02,503:[predict.py:753 - predict() ] predictions shape - (222, 1000, 2) INFO:2026-07-09 23:15:02,506:[predict.py:775 - predict() ] bigWig HEADER - [('chr1', 248956422), ('chr10', 133797422), ('chr11', 135086622), ('chr12', 133275309), ('chr13', 114364328), ('chr14', 107043718), ('chr15', 101991189), ('chr16', 90338345), ('chr17', 83257441), ('chr18', 80373285), ('chr19', 58617616), ('chr2', 242193529), ('chr20', 64444167), ('chr21', 46709983), ('chr22', 50818468), ('chr3', 198295559), ('chr4', 190214555), ('chr5', 181538259), ('chr6', 170805979), ('chr7', 159345973), ('chr8', 145138636), ('chr9', 138394717), ('chrM', 16569), ('chrX', 156040895), ('chrY', 57227415)] INFO:2026-07-09 23:15:03,314:[predict.py:801 - predict() ] min max median INFO:2026-07-09 23:15:03,314:[predict.py:806 - predict() ] mnll 0.000 0.130 0.021 INFO:2026-07-09 23:15:03,314:[predict.py:811 - predict() ] cross_entropy 0.000 0.130 0.021 INFO:2026-07-09 23:15:03,315:[predict.py:816 - predict() ] jsd 0.112 0.444 0.261 INFO:2026-07-09 23:15:03,315:[predict.py:821 - predict() ] spearman -0.505 0.689 0.191 INFO:2026-07-09 23:15:03,315:[predict.py:826 - predict() ] pearson -0.650 0.833 0.263 INFO:2026-07-09 23:15:03,315:[predict.py:831 - predict() ] mse 0.013 1.372 0.034 INFO:2026-07-09 23:15:03,315:[predict.py:833 - predict() ] ============================================== INFO:2026-07-09 23:15:03,322:[predict.py:848 - predict() ] counts pearson: [0.57833515 0.56024677] INFO:2026-07-09 23:15:03,322:[predict.py:849 - predict() ] counts spearman: [0.46400733 0.43730301] INFO:2026-07-10 15:21:26,086:[predict.py:399 - predict() ] SEQGEN Class Name: MBPNetSequenceGenerator INFO:2026-07-10 15:21:26,114:[generators.py:483 - _pad_samples() ] mode 'test': Data size (after padding 34 samples) - 256 INFO:2026-07-10 15:21:26,147:[predict.py:460 - predict() ] Writing predictions to predictions/Kasumi-1_AE/fold_1/model_split000_predictions.h5 DEBUG:2026-07-10 15:21:26,186:[generators.py:731 - _epoch_run() ] test spawning process 0, df size (128, 3) sum(num_batches) 2 DEBUG:2026-07-10 15:21:26,220:[generators.py:731 - _epoch_run() ] test spawning process 1, df size (128, 3) sum(num_batches) 4 DEBUG:2026-07-10 15:21:26,251:[generators.py:757 - _epoch_run() ] test num_batches list [2, 2] DEBUG:2026-07-10 15:21:26,252:[generators.py:770 - _epoch_run() ] test starting stealer thread 0 [2] DEBUG:2026-07-10 15:21:26,260:[generators.py:770 - _epoch_run() ] test starting stealer thread 1 [2] DEBUG:2026-07-10 15:21:27,189:[generators.py:676 - _stealer() ] test stealer thread 0 got 2 batches from mpq DEBUG:2026-07-10 15:21:27,179:[generators.py:652 - _proc_target() ] test process 0 put 2 batches into mpq DEBUG:2026-07-10 15:21:27,759:[generators.py:652 - _proc_target() ] test process 1 put 2 batches into mpq DEBUG:2026-07-10 15:21:27,775:[generators.py:676 - _stealer() ] test stealer thread 1 got 2 batches from mpq DEBUG:2026-07-10 15:21:59,367:[generators.py:814 - gen() ] test waiting to join process 0 DEBUG:2026-07-10 15:21:59,367:[generators.py:819 - gen() ] test waiting to join thread 0 DEBUG:2026-07-10 15:21:59,368:[generators.py:823 - gen() ] test join complete for process 0 DEBUG:2026-07-10 15:21:59,368:[generators.py:814 - gen() ] test waiting to join process 1 DEBUG:2026-07-10 15:21:59,368:[generators.py:819 - gen() ] test waiting to join thread 1 DEBUG:2026-07-10 15:21:59,368:[generators.py:823 - gen() ] test join complete for process 1 DEBUG:2026-07-10 15:21:59,368:[generators.py:826 - gen() ] test Finished join for epoch DEBUG:2026-07-10 15:21:59,368:[generators.py:828 - gen() ] test Ready for next epoch INFO:2026-07-10 15:21:59,368:[predict.py:731 - predict() ] Writing to h5 file ... INFO:2026-07-10 15:21:59,461:[predict.py:747 - predict() ] Elapsed Time: 33.310049533843994 secs INFO:2026-07-10 15:21:59,461:[predict.py:751 - predict() ] Generating predicted profile bigWigs ... INFO:2026-07-10 15:21:59,461:[predict.py:753 - predict() ] predictions shape - (222, 1000, 2) INFO:2026-07-10 15:21:59,465:[predict.py:775 - predict() ] bigWig HEADER - [('chr1', 248956422), ('chr10', 133797422), ('chr11', 135086622), ('chr12', 133275309), ('chr13', 114364328), ('chr14', 107043718), ('chr15', 101991189), ('chr16', 90338345), ('chr17', 83257441), ('chr18', 80373285), ('chr19', 58617616), ('chr2', 242193529), ('chr20', 64444167), ('chr21', 46709983), ('chr22', 50818468), ('chr3', 198295559), ('chr4', 190214555), ('chr5', 181538259), ('chr6', 170805979), ('chr7', 159345973), ('chr8', 145138636), ('chr9', 138394717), ('chrM', 16569), ('chrX', 156040895), ('chrY', 57227415)] INFO:2026-07-10 15:22:00,521:[predict.py:801 - predict() ] min max median INFO:2026-07-10 15:22:00,521:[predict.py:806 - predict() ] mnll 0.000 0.215 0.043 INFO:2026-07-10 15:22:00,521:[predict.py:811 - predict() ] cross_entropy 0.000 0.215 0.043 INFO:2026-07-10 15:22:00,521:[predict.py:816 - predict() ] jsd 0.100 0.479 0.287 INFO:2026-07-10 15:22:00,522:[predict.py:821 - predict() ] spearman -0.556 0.765 0.267 INFO:2026-07-10 15:22:00,522:[predict.py:826 - predict() ] pearson -0.787 0.856 0.373 INFO:2026-07-10 15:22:00,522:[predict.py:831 - predict() ] mse 0.013 1.411 0.034 INFO:2026-07-10 15:22:00,522:[predict.py:833 - predict() ] ============================================== INFO:2026-07-10 15:22:00,622:[predict.py:848 - predict() ] counts pearson: [0.51504953 0.50299082] INFO:2026-07-10 15:22:00,622:[predict.py:849 - predict() ] counts spearman: [0.4400982 0.40764162]