INFO:2026-08-05 14:56:06,573:[predict.py:399 - predict() ] SEQGEN Class Name: MBPNetSequenceGenerator INFO:2026-08-05 14:56:06,591:[generators.py:483 - _pad_samples() ] mode 'test': Data size (after padding 112 samples) - 3968 INFO:2026-08-05 14:56:06,603:[predict.py:460 - predict() ] Writing predictions to predictions/HA-RUNX1-ETO_5Dox/fold_0/model_split000_predictions.h5 DEBUG:2026-08-05 14:56:06,614:[generators.py:731 - _epoch_run() ] test spawning process 0, df size (1984, 3) sum(num_batches) 31 DEBUG:2026-08-05 14:56:06,640:[generators.py:731 - _epoch_run() ] test spawning process 1, df size (1984, 3) sum(num_batches) 62 DEBUG:2026-08-05 14:56:06,662:[generators.py:757 - _epoch_run() ] test num_batches list [31, 31] DEBUG:2026-08-05 14:56:06,662:[generators.py:770 - _epoch_run() ] test starting stealer thread 0 [31] DEBUG:2026-08-05 14:56:06,662:[generators.py:770 - _epoch_run() ] test starting stealer thread 1 [31] DEBUG:2026-08-05 14:56:13,366:[generators.py:676 - _stealer() ] test stealer thread 0 got 31 batches from mpq DEBUG:2026-08-05 14:56:13,345:[generators.py:652 - _proc_target() ] test process 0 put 31 batches into mpq DEBUG:2026-08-05 14:56:14,071:[generators.py:652 - _proc_target() ] test process 1 put 31 batches into mpq DEBUG:2026-08-05 14:56:14,123:[generators.py:676 - _stealer() ] test stealer thread 1 got 31 batches from mpq DEBUG:2026-08-05 14:56:45,832:[generators.py:814 - gen() ] test waiting to join process 0 DEBUG:2026-08-05 14:56:45,833:[generators.py:819 - gen() ] test waiting to join thread 0 DEBUG:2026-08-05 14:56:45,833:[generators.py:823 - gen() ] test join complete for process 0 DEBUG:2026-08-05 14:56:45,833:[generators.py:814 - gen() ] test waiting to join process 1 DEBUG:2026-08-05 14:56:45,833:[generators.py:819 - gen() ] test waiting to join thread 1 DEBUG:2026-08-05 14:56:45,833:[generators.py:823 - gen() ] test join complete for process 1 DEBUG:2026-08-05 14:56:45,833:[generators.py:826 - gen() ] test Finished join for epoch DEBUG:2026-08-05 14:56:45,833:[generators.py:828 - gen() ] test Ready for next epoch INFO:2026-08-05 14:56:45,833:[predict.py:731 - predict() ] Writing to h5 file ... INFO:2026-08-05 14:56:47,551:[predict.py:747 - predict() ] Elapsed Time: 40.946444034576416 secs INFO:2026-08-05 14:56:47,551:[predict.py:751 - predict() ] Generating predicted profile bigWigs ... INFO:2026-08-05 14:56:47,551:[predict.py:753 - predict() ] predictions shape - (3856, 1000, 2) INFO:2026-08-05 14:56:47,553:[predict.py:775 - predict() ] bigWig HEADER - [('chr1', 248956422), ('chr10', 133797422), ('chr11', 135086622), ('chr12', 133275309), ('chr13', 114364328), ('chr14', 107043718), ('chr15', 101991189), ('chr16', 90338345), ('chr17', 83257441), ('chr18', 80373285), ('chr19', 58617616), ('chr2', 242193529), ('chr20', 64444167), ('chr21', 46709983), ('chr22', 50818468), ('chr3', 198295559), ('chr4', 190214555), ('chr5', 181538259), ('chr6', 170805979), ('chr7', 159345973), ('chr8', 145138636), ('chr9', 138394717), ('chrM', 16569), ('chrX', 156040895), ('chrY', 57227415)] INFO:2026-08-05 14:56:56,871:[predict.py:801 - predict() ] min max median INFO:2026-08-05 14:56:56,871:[predict.py:806 - predict() ] mnll 0.000 0.924 0.112 INFO:2026-08-05 14:56:56,872:[predict.py:811 - predict() ] cross_entropy 0.000 0.924 0.113 INFO:2026-08-05 14:56:56,872:[predict.py:816 - predict() ] jsd 0.076 0.782 0.559 INFO:2026-08-05 14:56:56,872:[predict.py:821 - predict() ] spearman -0.498 0.947 0.596 INFO:2026-08-05 14:56:56,872:[predict.py:826 - predict() ] pearson -0.746 0.952 0.637 INFO:2026-08-05 14:56:56,872:[predict.py:831 - predict() ] mse 0.008 17.876 0.097 INFO:2026-08-05 14:56:56,872:[predict.py:833 - predict() ] ============================================== INFO:2026-08-05 14:56:56,937:[predict.py:848 - predict() ] counts pearson: [0.6376593 0.63623606] INFO:2026-08-05 14:56:56,937:[predict.py:849 - predict() ] counts spearman: [0.61383543 0.60986635] INFO:2026-08-06 14:32:43,408:[predict.py:399 - predict() ] SEQGEN Class Name: MBPNetSequenceGenerator INFO:2026-08-06 14:32:43,447:[generators.py:483 - _pad_samples() ] mode 'test': Data size (after padding 88 samples) - 12032 INFO:2026-08-06 14:32:43,461:[predict.py:460 - predict() ] Writing predictions to predictions/HA-RUNX1-ETO_5Dox/fold_0/model_split000_predictions.h5 DEBUG:2026-08-06 14:32:43,473:[generators.py:731 - _epoch_run() ] test spawning process 0, df size (6016, 3) sum(num_batches) 94 DEBUG:2026-08-06 14:32:43,499:[generators.py:731 - _epoch_run() ] test spawning process 1, df size (6016, 3) sum(num_batches) 188 DEBUG:2026-08-06 14:32:43,523:[generators.py:757 - _epoch_run() ] test num_batches list [94, 94] DEBUG:2026-08-06 14:32:43,523:[generators.py:770 - _epoch_run() ] test starting stealer thread 0 [94] DEBUG:2026-08-06 14:32:43,523:[generators.py:770 - _epoch_run() ] test starting stealer thread 1 [94] DEBUG:2026-08-06 14:33:00,323:[generators.py:652 - _proc_target() ] test process 0 put 94 batches into mpq DEBUG:2026-08-06 14:33:00,395:[generators.py:676 - _stealer() ] test stealer thread 0 got 94 batches from mpq DEBUG:2026-08-06 14:33:01,119:[generators.py:652 - _proc_target() ] test process 1 put 94 batches into mpq DEBUG:2026-08-06 14:33:01,136:[generators.py:676 - _stealer() ] test stealer thread 1 got 94 batches from mpq DEBUG:2026-08-06 14:34:03,343:[generators.py:814 - gen() ] test waiting to join process 0 DEBUG:2026-08-06 14:34:03,343:[generators.py:819 - gen() ] test waiting to join thread 0 DEBUG:2026-08-06 14:34:03,343:[generators.py:823 - gen() ] test join complete for process 0 DEBUG:2026-08-06 14:34:03,343:[generators.py:814 - gen() ] test waiting to join process 1 DEBUG:2026-08-06 14:34:03,343:[generators.py:819 - gen() ] test waiting to join thread 1 DEBUG:2026-08-06 14:34:03,343:[generators.py:823 - gen() ] test join complete for process 1 DEBUG:2026-08-06 14:34:03,343:[generators.py:826 - gen() ] test Finished join for epoch DEBUG:2026-08-06 14:34:03,343:[generators.py:828 - gen() ] test Ready for next epoch INFO:2026-08-06 14:34:03,343:[predict.py:731 - predict() ] Writing to h5 file ... INFO:2026-08-06 14:34:08,912:[predict.py:747 - predict() ] Elapsed Time: 85.45003271102905 secs INFO:2026-08-06 14:34:08,913:[predict.py:751 - predict() ] Generating predicted profile bigWigs ... INFO:2026-08-06 14:34:08,913:[predict.py:753 - predict() ] predictions shape - (11944, 1000, 2) INFO:2026-08-06 14:34:08,916:[predict.py:775 - predict() ] bigWig HEADER - [('chr1', 248956422), ('chr10', 133797422), ('chr11', 135086622), ('chr12', 133275309), ('chr13', 114364328), ('chr14', 107043718), ('chr15', 101991189), ('chr16', 90338345), ('chr17', 83257441), ('chr18', 80373285), ('chr19', 58617616), ('chr2', 242193529), ('chr20', 64444167), ('chr21', 46709983), ('chr22', 50818468), ('chr3', 198295559), ('chr4', 190214555), ('chr5', 181538259), ('chr6', 170805979), ('chr7', 159345973), ('chr8', 145138636), ('chr9', 138394717), ('chrM', 16569), ('chrX', 156040895), ('chrY', 57227415)] INFO:2026-08-06 14:34:38,326:[predict.py:801 - predict() ] min max median INFO:2026-08-06 14:34:38,327:[predict.py:806 - predict() ] mnll 0.000 0.804 0.055 INFO:2026-08-06 14:34:38,328:[predict.py:811 - predict() ] cross_entropy 0.000 0.804 0.055 INFO:2026-08-06 14:34:38,328:[predict.py:816 - predict() ] jsd 0.000 0.749 0.462 INFO:2026-08-06 14:34:38,328:[predict.py:821 - predict() ] spearman -0.584 0.954 0.407 INFO:2026-08-06 14:34:38,329:[predict.py:826 - predict() ] pearson -0.663 0.940 0.487 INFO:2026-08-06 14:34:38,329:[predict.py:831 - predict() ] mse 0.004 5726818.005 0.057 INFO:2026-08-06 14:34:38,329:[predict.py:833 - predict() ] ============================================== INFO:2026-08-06 14:34:38,457:[predict.py:848 - predict() ] counts pearson: [0.59806976 0.59051469] INFO:2026-08-06 14:34:38,457:[predict.py:849 - predict() ] counts spearman: [0.58967963 0.59173826]