INFO:2026-07-10 00:09:04,428:[predict.py:399 - predict() ] SEQGEN Class Name: MBPNetSequenceGenerator INFO:2026-07-10 00:09:04,476:[generators.py:483 - _pad_samples() ] mode 'test': Data size (after padding 35 samples) - 13824 INFO:2026-07-10 00:09:04,484:[predict.py:460 - predict() ] Writing predictions to predictions/AML1-ETO/fold_3/model_split000_predictions.h5 DEBUG:2026-07-10 00:09:04,500:[generators.py:731 - _epoch_run() ] test spawning process 0, df size (6912, 3) sum(num_batches) 108 DEBUG:2026-07-10 00:09:04,537:[generators.py:731 - _epoch_run() ] test spawning process 1, df size (6912, 3) sum(num_batches) 216 DEBUG:2026-07-10 00:09:04,567:[generators.py:757 - _epoch_run() ] test num_batches list [108, 108] DEBUG:2026-07-10 00:09:04,567:[generators.py:770 - _epoch_run() ] test starting stealer thread 0 [108] DEBUG:2026-07-10 00:09:04,602:[generators.py:770 - _epoch_run() ] test starting stealer thread 1 [108] DEBUG:2026-07-10 00:09:35,008:[generators.py:652 - _proc_target() ] test process 0 put 108 batches into mpq DEBUG:2026-07-10 00:09:35,133:[generators.py:676 - _stealer() ] test stealer thread 0 got 108 batches from mpq DEBUG:2026-07-10 00:09:39,580:[generators.py:652 - _proc_target() ] test process 1 put 108 batches into mpq DEBUG:2026-07-10 00:09:39,616:[generators.py:676 - _stealer() ] test stealer thread 1 got 108 batches from mpq DEBUG:2026-07-10 00:11:41,156:[generators.py:814 - gen() ] test waiting to join process 0 DEBUG:2026-07-10 00:11:41,156:[generators.py:819 - gen() ] test waiting to join thread 0 DEBUG:2026-07-10 00:11:41,156:[generators.py:823 - gen() ] test join complete for process 0 DEBUG:2026-07-10 00:11:41,156:[generators.py:814 - gen() ] test waiting to join process 1 DEBUG:2026-07-10 00:11:41,156:[generators.py:819 - gen() ] test waiting to join thread 1 DEBUG:2026-07-10 00:11:41,157:[generators.py:823 - gen() ] test join complete for process 1 DEBUG:2026-07-10 00:11:41,157:[generators.py:826 - gen() ] test Finished join for epoch DEBUG:2026-07-10 00:11:41,157:[generators.py:828 - gen() ] test Ready for next epoch INFO:2026-07-10 00:11:41,157:[predict.py:731 - predict() ] Writing to h5 file ... INFO:2026-07-10 00:11:50,198:[predict.py:747 - predict() ] Elapsed Time: 165.7108006477356 secs INFO:2026-07-10 00:11:50,199:[predict.py:751 - predict() ] Generating predicted profile bigWigs ... INFO:2026-07-10 00:11:50,199:[predict.py:753 - predict() ] predictions shape - (13789, 1000, 2) INFO:2026-07-10 00:11:50,207:[predict.py:775 - predict() ] bigWig HEADER - [('chr1', 248956422), ('chr10', 133797422), ('chr11', 135086622), ('chr12', 133275309), ('chr13', 114364328), ('chr14', 107043718), ('chr15', 101991189), ('chr16', 90338345), ('chr17', 83257441), ('chr18', 80373285), ('chr19', 58617616), ('chr2', 242193529), ('chr20', 64444167), ('chr21', 46709983), ('chr22', 50818468), ('chr3', 198295559), ('chr4', 190214555), ('chr5', 181538259), ('chr6', 170805979), ('chr7', 159345973), ('chr8', 145138636), ('chr9', 138394717), ('chrM', 16569), ('chrX', 156040895), ('chrY', 57227415)] INFO:2026-07-10 00:12:39,380:[predict.py:801 - predict() ] min max median INFO:2026-07-10 00:12:39,381:[predict.py:806 - predict() ] mnll 0.000 0.774 0.235 INFO:2026-07-10 00:12:39,382:[predict.py:811 - predict() ] cross_entropy 0.000 0.774 0.235 INFO:2026-07-10 00:12:39,382:[predict.py:816 - predict() ] jsd 0.060 0.835 0.566 INFO:2026-07-10 00:12:39,383:[predict.py:821 - predict() ] spearman -0.377 0.987 0.777 INFO:2026-07-10 00:12:39,383:[predict.py:826 - predict() ] pearson -0.591 0.969 0.699 INFO:2026-07-10 00:12:39,384:[predict.py:831 - predict() ] mse 0.012 8.906 0.104 INFO:2026-07-10 00:12:39,384:[predict.py:833 - predict() ] ============================================== INFO:2026-07-10 00:12:39,409:[predict.py:848 - predict() ] counts pearson: [0.57113079 0.57146207] INFO:2026-07-10 00:12:39,409:[predict.py:849 - predict() ] counts spearman: [0.54542325 0.54497352] INFO:2026-07-10 16:31:18,889:[predict.py:399 - predict() ] SEQGEN Class Name: MBPNetSequenceGenerator INFO:2026-07-10 16:31:19,256:[generators.py:483 - _pad_samples() ] mode 'test': Data size (after padding 35 samples) - 13824 INFO:2026-07-10 16:31:19,282:[predict.py:460 - predict() ] Writing predictions to predictions/AML1-ETO/fold_3/model_split000_predictions.h5 DEBUG:2026-07-10 16:31:19,671:[generators.py:731 - _epoch_run() ] test spawning process 0, df size (6912, 3) sum(num_batches) 108 DEBUG:2026-07-10 16:31:19,720:[generators.py:731 - _epoch_run() ] test spawning process 1, df size (6912, 3) sum(num_batches) 216 DEBUG:2026-07-10 16:31:19,803:[generators.py:757 - _epoch_run() ] test num_batches list [108, 108] DEBUG:2026-07-10 16:31:19,803:[generators.py:770 - _epoch_run() ] test starting stealer thread 0 [108] DEBUG:2026-07-10 16:31:19,812:[generators.py:770 - _epoch_run() ] test starting stealer thread 1 [108] DEBUG:2026-07-10 16:32:04,029:[generators.py:652 - _proc_target() ] test process 0 put 108 batches into mpq DEBUG:2026-07-10 16:32:04,073:[generators.py:676 - _stealer() ] test stealer thread 0 got 108 batches from mpq DEBUG:2026-07-10 16:32:04,496:[generators.py:652 - _proc_target() ] test process 1 put 108 batches into mpq DEBUG:2026-07-10 16:32:04,532:[generators.py:676 - _stealer() ] test stealer thread 1 got 108 batches from mpq DEBUG:2026-07-10 16:42:28,361:[generators.py:814 - gen() ] test waiting to join process 0 DEBUG:2026-07-10 16:42:28,361:[generators.py:819 - gen() ] test waiting to join thread 0 DEBUG:2026-07-10 16:42:28,361:[generators.py:823 - gen() ] test join complete for process 0 DEBUG:2026-07-10 16:42:28,361:[generators.py:814 - gen() ] test waiting to join process 1 DEBUG:2026-07-10 16:42:28,361:[generators.py:819 - gen() ] test waiting to join thread 1 DEBUG:2026-07-10 16:42:28,361:[generators.py:823 - gen() ] test join complete for process 1 DEBUG:2026-07-10 16:42:28,361:[generators.py:826 - gen() ] test Finished join for epoch DEBUG:2026-07-10 16:42:28,361:[generators.py:828 - gen() ] test Ready for next epoch INFO:2026-07-10 16:42:28,361:[predict.py:731 - predict() ] Writing to h5 file ... INFO:2026-07-10 16:42:34,584:[predict.py:747 - predict() ] Elapsed Time: 675.3007276058197 secs INFO:2026-07-10 16:42:34,584:[predict.py:751 - predict() ] Generating predicted profile bigWigs ... INFO:2026-07-10 16:42:34,584:[predict.py:753 - predict() ] predictions shape - (13789, 1000, 2) INFO:2026-07-10 16:42:34,588:[predict.py:775 - predict() ] bigWig HEADER - [('chr1', 248956422), ('chr10', 133797422), ('chr11', 135086622), ('chr12', 133275309), ('chr13', 114364328), ('chr14', 107043718), ('chr15', 101991189), ('chr16', 90338345), ('chr17', 83257441), ('chr18', 80373285), ('chr19', 58617616), ('chr2', 242193529), ('chr20', 64444167), ('chr21', 46709983), ('chr22', 50818468), ('chr3', 198295559), ('chr4', 190214555), ('chr5', 181538259), ('chr6', 170805979), ('chr7', 159345973), ('chr8', 145138636), ('chr9', 138394717), ('chrM', 16569), ('chrX', 156040895), ('chrY', 57227415)] INFO:2026-07-10 16:43:05,824:[predict.py:801 - predict() ] min max median INFO:2026-07-10 16:43:05,825:[predict.py:806 - predict() ] mnll 0.000 0.776 0.238 INFO:2026-07-10 16:43:05,826:[predict.py:811 - predict() ] cross_entropy 0.000 0.776 0.238 INFO:2026-07-10 16:43:05,826:[predict.py:816 - predict() ] jsd 0.074 0.843 0.566 INFO:2026-07-10 16:43:05,826:[predict.py:821 - predict() ] spearman -0.390 0.983 0.781 INFO:2026-07-10 16:43:05,827:[predict.py:826 - predict() ] pearson -0.534 0.969 0.702 INFO:2026-07-10 16:43:05,827:[predict.py:831 - predict() ] mse 0.011 8.479 0.102 INFO:2026-07-10 16:43:05,827:[predict.py:833 - predict() ] ============================================== INFO:2026-07-10 16:43:06,704:[predict.py:848 - predict() ] counts pearson: [0.65104909 0.65139332] INFO:2026-07-10 16:43:06,705:[predict.py:849 - predict() ] counts spearman: [0.62664085 0.62740247]