INFO:2026-07-10 00:24:18,362:[predict.py:399 - predict() ] SEQGEN Class Name: MBPNetSequenceGenerator INFO:2026-07-10 00:24:18,802:[generators.py:483 - _pad_samples() ] mode 'test': Data size (after padding 35 samples) - 13824 INFO:2026-07-10 00:24:18,822:[predict.py:460 - predict() ] Writing predictions to predictions/AML1-ETO/fold_0/model_split000_predictions.h5 DEBUG:2026-07-10 00:24:18,840:[generators.py:731 - _epoch_run() ] test spawning process 0, df size (6912, 3) sum(num_batches) 108 DEBUG:2026-07-10 00:24:18,911:[generators.py:731 - _epoch_run() ] test spawning process 1, df size (6912, 3) sum(num_batches) 216 DEBUG:2026-07-10 00:24:18,976:[generators.py:757 - _epoch_run() ] test num_batches list [108, 108] DEBUG:2026-07-10 00:24:18,977:[generators.py:770 - _epoch_run() ] test starting stealer thread 0 [108] DEBUG:2026-07-10 00:24:18,978:[generators.py:770 - _epoch_run() ] test starting stealer thread 1 [108] DEBUG:2026-07-10 00:24:38,402:[generators.py:652 - _proc_target() ] test process 0 put 108 batches into mpq DEBUG:2026-07-10 00:24:38,435:[generators.py:676 - _stealer() ] test stealer thread 0 got 108 batches from mpq DEBUG:2026-07-10 00:24:40,687:[generators.py:652 - _proc_target() ] test process 1 put 108 batches into mpq DEBUG:2026-07-10 00:24:40,711:[generators.py:676 - _stealer() ] test stealer thread 1 got 108 batches from mpq DEBUG:2026-07-10 00:34:29,475:[generators.py:814 - gen() ] test waiting to join process 0 DEBUG:2026-07-10 00:34:29,477:[generators.py:819 - gen() ] test waiting to join thread 0 DEBUG:2026-07-10 00:34:29,477:[generators.py:823 - gen() ] test join complete for process 0 DEBUG:2026-07-10 00:34:29,477:[generators.py:814 - gen() ] test waiting to join process 1 DEBUG:2026-07-10 00:34:29,477:[generators.py:819 - gen() ] test waiting to join thread 1 DEBUG:2026-07-10 00:34:29,477:[generators.py:823 - gen() ] test join complete for process 1 DEBUG:2026-07-10 00:34:29,477:[generators.py:826 - gen() ] test Finished join for epoch DEBUG:2026-07-10 00:34:29,477:[generators.py:828 - gen() ] test Ready for next epoch INFO:2026-07-10 00:34:29,477:[predict.py:731 - predict() ] Writing to h5 file ... INFO:2026-07-10 00:34:35,734:[predict.py:747 - predict() ] Elapsed Time: 616.9099102020264 secs INFO:2026-07-10 00:34:35,734:[predict.py:751 - predict() ] Generating predicted profile bigWigs ... INFO:2026-07-10 00:34:35,734:[predict.py:753 - predict() ] predictions shape - (13789, 1000, 2) INFO:2026-07-10 00:34:35,737:[predict.py:775 - predict() ] bigWig HEADER - [('chr1', 248956422), ('chr10', 133797422), ('chr11', 135086622), ('chr12', 133275309), ('chr13', 114364328), ('chr14', 107043718), ('chr15', 101991189), ('chr16', 90338345), ('chr17', 83257441), ('chr18', 80373285), ('chr19', 58617616), ('chr2', 242193529), ('chr20', 64444167), ('chr21', 46709983), ('chr22', 50818468), ('chr3', 198295559), ('chr4', 190214555), ('chr5', 181538259), ('chr6', 170805979), ('chr7', 159345973), ('chr8', 145138636), ('chr9', 138394717), ('chrM', 16569), ('chrX', 156040895), ('chrY', 57227415)] INFO:2026-07-10 00:35:08,014:[predict.py:801 - predict() ] min max median INFO:2026-07-10 00:35:08,015:[predict.py:806 - predict() ] mnll 0.000 0.771 0.236 INFO:2026-07-10 00:35:08,015:[predict.py:811 - predict() ] cross_entropy 0.000 0.771 0.236 INFO:2026-07-10 00:35:08,015:[predict.py:816 - predict() ] jsd 0.086 0.845 0.566 INFO:2026-07-10 00:35:08,016:[predict.py:821 - predict() ] spearman -0.449 0.983 0.779 INFO:2026-07-10 00:35:08,016:[predict.py:826 - predict() ] pearson -0.614 0.971 0.702 INFO:2026-07-10 00:35:08,016:[predict.py:831 - predict() ] mse 0.011 9.718 0.101 INFO:2026-07-10 00:35:08,017:[predict.py:833 - predict() ] ============================================== INFO:2026-07-10 00:35:08,386:[predict.py:848 - predict() ] counts pearson: [0.59788925 0.59728565] INFO:2026-07-10 00:35:08,386:[predict.py:849 - predict() ] counts spearman: [0.57755561 0.57616556] INFO:2026-07-10 13:44:53,871:[predict.py:399 - predict() ] SEQGEN Class Name: MBPNetSequenceGenerator INFO:2026-07-10 13:44:53,932:[generators.py:483 - _pad_samples() ] mode 'test': Data size (after padding 35 samples) - 13824 INFO:2026-07-10 13:44:54,020:[predict.py:460 - predict() ] Writing predictions to predictions/AML1-ETO/fold_0/model_split000_predictions.h5 DEBUG:2026-07-10 13:44:54,042:[generators.py:731 - _epoch_run() ] test spawning process 0, df size (6912, 3) sum(num_batches) 108 DEBUG:2026-07-10 13:44:54,081:[generators.py:731 - _epoch_run() ] test spawning process 1, df size (6912, 3) sum(num_batches) 216 DEBUG:2026-07-10 13:44:54,109:[generators.py:757 - _epoch_run() ] test num_batches list [108, 108] DEBUG:2026-07-10 13:44:54,110:[generators.py:770 - _epoch_run() ] test starting stealer thread 0 [108] DEBUG:2026-07-10 13:44:54,110:[generators.py:770 - _epoch_run() ] test starting stealer thread 1 [108] DEBUG:2026-07-10 13:45:28,271:[generators.py:652 - _proc_target() ] test process 1 put 108 batches into mpq DEBUG:2026-07-10 13:45:28,288:[generators.py:676 - _stealer() ] test stealer thread 1 got 108 batches from mpq DEBUG:2026-07-10 13:45:28,719:[generators.py:652 - _proc_target() ] test process 0 put 108 batches into mpq DEBUG:2026-07-10 13:45:28,741:[generators.py:676 - _stealer() ] test stealer thread 0 got 108 batches from mpq DEBUG:2026-07-10 13:46:58,612:[generators.py:814 - gen() ] test waiting to join process 0 DEBUG:2026-07-10 13:46:58,612:[generators.py:819 - gen() ] test waiting to join thread 0 DEBUG:2026-07-10 13:46:58,612:[generators.py:823 - gen() ] test join complete for process 0 DEBUG:2026-07-10 13:46:58,612:[generators.py:814 - gen() ] test waiting to join process 1 DEBUG:2026-07-10 13:46:58,612:[generators.py:819 - gen() ] test waiting to join thread 1 DEBUG:2026-07-10 13:46:58,613:[generators.py:823 - gen() ] test join complete for process 1 DEBUG:2026-07-10 13:46:58,613:[generators.py:826 - gen() ] test Finished join for epoch DEBUG:2026-07-10 13:46:58,613:[generators.py:828 - gen() ] test Ready for next epoch INFO:2026-07-10 13:46:58,613:[predict.py:731 - predict() ] Writing to h5 file ... INFO:2026-07-10 13:47:06,814:[predict.py:747 - predict() ] Elapsed Time: 132.78734850883484 secs INFO:2026-07-10 13:47:06,817:[predict.py:751 - predict() ] Generating predicted profile bigWigs ... INFO:2026-07-10 13:47:06,817:[predict.py:753 - predict() ] predictions shape - (13789, 1000, 2) INFO:2026-07-10 13:47:06,824:[predict.py:775 - predict() ] bigWig HEADER - [('chr1', 248956422), ('chr10', 133797422), ('chr11', 135086622), ('chr12', 133275309), ('chr13', 114364328), ('chr14', 107043718), ('chr15', 101991189), ('chr16', 90338345), ('chr17', 83257441), ('chr18', 80373285), ('chr19', 58617616), ('chr2', 242193529), ('chr20', 64444167), ('chr21', 46709983), ('chr22', 50818468), ('chr3', 198295559), ('chr4', 190214555), ('chr5', 181538259), ('chr6', 170805979), ('chr7', 159345973), ('chr8', 145138636), ('chr9', 138394717), ('chrM', 16569), ('chrX', 156040895), ('chrY', 57227415)] INFO:2026-07-10 13:47:51,925:[predict.py:801 - predict() ] min max median INFO:2026-07-10 13:47:51,926:[predict.py:806 - predict() ] mnll 0.000 0.766 0.236 INFO:2026-07-10 13:47:51,927:[predict.py:811 - predict() ] cross_entropy 0.000 0.766 0.236 INFO:2026-07-10 13:47:51,927:[predict.py:816 - predict() ] jsd 0.069 0.840 0.563 INFO:2026-07-10 13:47:51,928:[predict.py:821 - predict() ] spearman -0.355 0.985 0.779 INFO:2026-07-10 13:47:51,928:[predict.py:826 - predict() ] pearson -0.549 0.972 0.701 INFO:2026-07-10 13:47:51,929:[predict.py:831 - predict() ] mse 0.011 9.213 0.101 INFO:2026-07-10 13:47:51,929:[predict.py:833 - predict() ] ============================================== INFO:2026-07-10 13:47:54,578:[predict.py:848 - predict() ] counts pearson: [0.60340838 0.60326448] INFO:2026-07-10 13:47:54,579:[predict.py:849 - predict() ] counts spearman: [0.58020709 0.58035612] INFO:2026-07-10 16:10:54,819:[predict.py:399 - predict() ] SEQGEN Class Name: MBPNetSequenceGenerator INFO:2026-07-10 16:10:54,882:[generators.py:483 - _pad_samples() ] mode 'test': Data size (after padding 35 samples) - 13824 INFO:2026-07-10 16:10:54,894:[predict.py:460 - predict() ] Writing predictions to predictions/AML1-ETO/fold_0/model_split000_predictions.h5 DEBUG:2026-07-10 16:10:54,905:[generators.py:731 - _epoch_run() ] test spawning process 0, df size (6912, 3) sum(num_batches) 108 DEBUG:2026-07-10 16:10:54,932:[generators.py:731 - _epoch_run() ] test spawning process 1, df size (6912, 3) sum(num_batches) 216 DEBUG:2026-07-10 16:10:54,969:[generators.py:757 - _epoch_run() ] test num_batches list [108, 108] DEBUG:2026-07-10 16:10:54,969:[generators.py:770 - _epoch_run() ] test starting stealer thread 0 [108] DEBUG:2026-07-10 16:10:54,982:[generators.py:770 - _epoch_run() ] test starting stealer thread 1 [108] DEBUG:2026-07-10 16:11:39,190:[generators.py:676 - _stealer() ] test stealer thread 0 got 108 batches from mpq DEBUG:2026-07-10 16:11:39,174:[generators.py:652 - _proc_target() ] test process 0 put 108 batches into mpq DEBUG:2026-07-10 16:11:39,356:[generators.py:652 - _proc_target() ] test process 1 put 108 batches into mpq DEBUG:2026-07-10 16:11:39,409:[generators.py:676 - _stealer() ] test stealer thread 1 got 108 batches from mpq DEBUG:2026-07-10 16:12:43,605:[generators.py:814 - gen() ] test waiting to join process 0 DEBUG:2026-07-10 16:12:43,605:[generators.py:819 - gen() ] test waiting to join thread 0 DEBUG:2026-07-10 16:12:43,605:[generators.py:823 - gen() ] test join complete for process 0 DEBUG:2026-07-10 16:12:43,605:[generators.py:814 - gen() ] test waiting to join process 1 DEBUG:2026-07-10 16:12:43,605:[generators.py:819 - gen() ] test waiting to join thread 1 DEBUG:2026-07-10 16:12:43,605:[generators.py:823 - gen() ] test join complete for process 1 DEBUG:2026-07-10 16:12:43,605:[generators.py:826 - gen() ] test Finished join for epoch DEBUG:2026-07-10 16:12:43,605:[generators.py:828 - gen() ] test Ready for next epoch INFO:2026-07-10 16:12:43,605:[predict.py:731 - predict() ] Writing to h5 file ... INFO:2026-07-10 16:12:50,278:[predict.py:747 - predict() ] Elapsed Time: 115.38223624229431 secs INFO:2026-07-10 16:12:50,278:[predict.py:751 - predict() ] Generating predicted profile bigWigs ... INFO:2026-07-10 16:12:50,278:[predict.py:753 - predict() ] predictions shape - (13789, 1000, 2) INFO:2026-07-10 16:12:50,281:[predict.py:775 - predict() ] bigWig HEADER - [('chr1', 248956422), ('chr10', 133797422), ('chr11', 135086622), ('chr12', 133275309), ('chr13', 114364328), ('chr14', 107043718), ('chr15', 101991189), ('chr16', 90338345), ('chr17', 83257441), ('chr18', 80373285), ('chr19', 58617616), ('chr2', 242193529), ('chr20', 64444167), ('chr21', 46709983), ('chr22', 50818468), ('chr3', 198295559), ('chr4', 190214555), ('chr5', 181538259), ('chr6', 170805979), ('chr7', 159345973), ('chr8', 145138636), ('chr9', 138394717), ('chrM', 16569), ('chrX', 156040895), ('chrY', 57227415)] INFO:2026-07-10 16:13:24,848:[predict.py:801 - predict() ] min max median INFO:2026-07-10 16:13:24,849:[predict.py:806 - predict() ] mnll 0.000 0.777 0.236 INFO:2026-07-10 16:13:24,849:[predict.py:811 - predict() ] cross_entropy 0.000 0.777 0.237 INFO:2026-07-10 16:13:24,849:[predict.py:816 - predict() ] jsd 0.059 0.831 0.567 INFO:2026-07-10 16:13:24,850:[predict.py:821 - predict() ] spearman -0.396 0.985 0.780 INFO:2026-07-10 16:13:24,850:[predict.py:826 - predict() ] pearson -0.578 0.971 0.701 INFO:2026-07-10 16:13:24,851:[predict.py:831 - predict() ] mse 0.011 9.216 0.101 INFO:2026-07-10 16:13:24,851:[predict.py:833 - predict() ] ============================================== INFO:2026-07-10 16:13:27,812:[predict.py:848 - predict() ] counts pearson: [0.60189271 0.60196069] INFO:2026-07-10 16:13:27,812:[predict.py:849 - predict() ] counts spearman: [0.57736513 0.57776913]