INFO:2026-04-13 20:49:26,528:[predict.py:399 - predict() ] SEQGEN Class Name: MBPNetSequenceGenerator INFO:2026-04-13 20:49:28,725:[generators.py:483 - _pad_samples() ] mode 'test': Data size (after padding 99 samples) - 3328 INFO:2026-04-13 20:49:28,736:[predict.py:460 - predict() ] Writing predictions to predictions/REH_RUNX1_rep2_native/fold_4/model_split000_predictions.h5 DEBUG:2026-04-13 20:49:28,769:[generators.py:731 - _epoch_run() ] test spawning process 0, df size (1664, 3) sum(num_batches) 26 DEBUG:2026-04-13 20:49:28,849:[generators.py:731 - _epoch_run() ] test spawning process 1, df size (1664, 3) sum(num_batches) 52 DEBUG:2026-04-13 20:49:28,903:[generators.py:757 - _epoch_run() ] test num_batches list [26, 26] DEBUG:2026-04-13 20:49:28,904:[generators.py:770 - _epoch_run() ] test starting stealer thread 0 [26] DEBUG:2026-04-13 20:49:28,905:[generators.py:770 - _epoch_run() ] test starting stealer thread 1 [26] DEBUG:2026-04-13 20:49:33,002:[generators.py:652 - _proc_target() ] test process 0 put 26 batches into mpq DEBUG:2026-04-13 20:49:33,031:[generators.py:652 - _proc_target() ] test process 1 put 26 batches into mpq DEBUG:2026-04-13 20:49:33,156:[generators.py:676 - _stealer() ] test stealer thread 0 got 26 batches from mpq DEBUG:2026-04-13 20:49:33,164:[generators.py:676 - _stealer() ] test stealer thread 1 got 26 batches from mpq DEBUG:2026-04-13 20:49:49,995:[generators.py:814 - gen() ] test waiting to join process 0 DEBUG:2026-04-13 20:49:49,997:[generators.py:819 - gen() ] test waiting to join thread 0 DEBUG:2026-04-13 20:49:49,997:[generators.py:823 - gen() ] test join complete for process 0 DEBUG:2026-04-13 20:49:49,997:[generators.py:814 - gen() ] test waiting to join process 1 DEBUG:2026-04-13 20:49:49,997:[generators.py:819 - gen() ] test waiting to join thread 1 DEBUG:2026-04-13 20:49:49,998:[generators.py:823 - gen() ] test join complete for process 1 DEBUG:2026-04-13 20:49:49,998:[generators.py:826 - gen() ] test Finished join for epoch DEBUG:2026-04-13 20:49:49,998:[generators.py:828 - gen() ] test Ready for next epoch INFO:2026-04-13 20:49:49,998:[predict.py:731 - predict() ] Writing to h5 file ... INFO:2026-04-13 20:49:53,414:[predict.py:747 - predict() ] Elapsed Time: 24.672298192977905 secs INFO:2026-04-13 20:49:53,415:[predict.py:751 - predict() ] Generating predicted profile bigWigs ... INFO:2026-04-13 20:49:53,415:[predict.py:753 - predict() ] predictions shape - (3229, 1000, 2) INFO:2026-04-13 20:49:53,424:[predict.py:775 - predict() ] bigWig HEADER - [('chr1', 248956422), ('chr10', 133797422), ('chr11', 135086622), ('chr12', 133275309), ('chr13', 114364328), ('chr14', 107043718), ('chr15', 101991189), ('chr16', 90338345), ('chr17', 83257441), ('chr18', 80373285), ('chr19', 58617616), ('chr2', 242193529), ('chr20', 64444167), ('chr21', 46709983), ('chr22', 50818468), ('chr3', 198295559), ('chr4', 190214555), ('chr5', 181538259), ('chr6', 170805979), ('chr7', 159345973), ('chr8', 145138636), ('chr9', 138394717), ('chrM', 16569), ('chrX', 156040895), ('chrY', 57227415)] INFO:2026-04-13 20:50:01,891:[predict.py:801 - predict() ] min max median INFO:2026-04-13 20:50:01,892:[predict.py:806 - predict() ] mnll nan nan nan INFO:2026-04-13 20:50:01,893:[predict.py:811 - predict() ] cross_entropy 0.000 0.995 0.983 INFO:2026-04-13 20:50:01,894:[predict.py:816 - predict() ] jsd 0.000 0.868 0.719 INFO:2026-04-13 20:50:01,894:[predict.py:821 - predict() ] spearman -0.041 0.984 0.927 INFO:2026-04-13 20:50:01,895:[predict.py:826 - predict() ] pearson 0.075 0.991 0.940 INFO:2026-04-13 20:50:01,895:[predict.py:831 - predict() ] mse 0.000 0.458 0.001 INFO:2026-04-13 20:50:01,895:[predict.py:833 - predict() ] ============================================== INFO:2026-04-13 20:50:02,481:[predict.py:848 - predict() ] counts pearson: [0.88361779 0.88779512] INFO:2026-04-13 20:50:02,481:[predict.py:849 - predict() ] counts spearman: [0.88174288 0.8849402 ]