{"batch_size": 64, "threads": 2, "input_seq_len": 2114, "output_len": 1000, "reference_genome": "../data/hg38.genome.fa", "chrom_sizes": "../data/hg38.chrom.sizes", "chroms": ["chr1", "chr2", "chrX", "chr3", "chr4", "chr5", "chr6", "chr7", "chr10", "chr8", "chr14", "chr9", "chr11", "chr13", "chr12", "chr15", "chr16", "chr17", "chrY", "chr18", "chr19", "chr20", "chr21", "chr22", "chrM"], "test_indices_file": null, "input_data": "input_data/REH_RUNX1_rep2_native/input_data_predict.json", "model": "models/REH_RUNX1_rep2_native/fold_2/model_split000", "sequence_generator_name": "BPNet", "reverse_complement_average": true, "output_window_size": 1000, "output_dir": "predictions/REH_RUNX1_rep2_native/fold_2", "time_zone": "US/Pacific", "automate_filenames": false, "generate_predicted_profile_bigWigs": true, "set_bias_as_zero": false, "orig_multi_loss": false}