Documentation
===================================

Modules
*******

1. generators
-------------

This module contains classes for all the sequence data generators

**Classes**
    
*MSequenceGenerator* - The main base class for all generators.
     
Multi task batch data generation for training deep neural networks on 
high-throughput sequencing data of various geonmics assays
    

*MBPNetSequenceGenerator* - Derives from MSequenceGenerator.
    
Multi task batch data generation for training BPNet on high-throughput
sequencing data of various geonmics assays
         

1.1 MSequenceGenerator
~~~~~~~~~~~~~~~~~~~~~~

.. autoclass:: mseqgen.generators.MSequenceGenerator
    :members:
    :no-private-members:

1.2 MBPNetSequenceGenerator
~~~~~~~~~~~~~~~~~~~~~~~~~~~

.. autoclass:: mseqgen.generators.MBPNetSequenceGenerator
    :members:
    :no-private-members:
    :inherited-members:

2. sequtils
------------

.. autofunction:: mseqgen.sequtils.one_hot_encode

.. autofunction:: mseqgen.sequtils.reverse_complement_of_sequences

.. autofunction:: mseqgen.sequtils.reverse_complement_of_profiles

.. autofunction:: mseqgen.sequtils.getChromPositions

.. autofunction:: mseqgen.sequtils.getPeakPositions