Index

B

basepairmodels.cli.bigwigutils module, [1] basepairmodels.cli.losses module, [1] basepairmodels.common.model_archs module, [1]

basepairmodels.common.stats module, [1] BPNet() (in module basepairmodels.common.model_archs), [1] BPNet1000d8() (in module basepairmodels.common.model_archs), [1] BPNet500d7() (in module basepairmodels.common.model_archs), [1] BPNetSumAll() (in module basepairmodels.common.model_archs), [1]

G

get_recommended_counts_loss_weight() (in module basepairmodels.common.stats), [1]

M

module basepairmodels.cli.bigwigutils, [1] basepairmodels.cli.losses, [1] basepairmodels.common.model_archs, [1] basepairmodels.common.stats, [1]

MultichannelMultinomialNLL (class in basepairmodels.cli.losses), [1] multinomial_nll() (in module basepairmodels.cli.losses), [1]

P

prepare_BPNet_output_files() (in module basepairmodels.cli.bigwigutils), [1]

W

write_BPNet_predictions() (in module basepairmodels.cli.bigwigutils), [1]