**********************
Command Line Interface
**********************

bpnettrainer
=============

.. argparse::
    :module: basepairmodels.cli.argparsers
    :func: training_argsparser
    :prog: bpnettrainer

predict
=======

.. argparse::
    :module: basepairmodels.cli.argparsers
    :func: predict_argsparser
    :prog: predict

bounds
===========

.. argparse::
    :module: basepairmodels.cli.bounds
    :func: bounds_argsparser
    :prog: bounds

metrics
=======

.. argparse::
    :module: basepairmodels.cli.argparsers
    :func: metrics_argsparser
    :prog: metrics

shap_scores
=========

.. argparse::
    :module: basepairmodels.cli.argparsers
    :func: shap_scores_argsparser
    :prog: shap_scores

motif_discovery
===========

.. argparse::
    :module: basepairmodels.cli.argparsers
    :func: motif_discovery_argsparser
    :prog: motif_discovery

logits2profile
===========

.. argparse::
    :module: basepairmodels.cli.logits2profile
    :func: logits2profile_argsparser
    :prog: logits2profile


embeddings
===========

.. argparse::
    :module: basepairmodels.cli.embeddings
    :func: embeddings_argsparser
    :prog: embeddings