{ "cells": [ { "cell_type": "code", "execution_count": 1, "id": "1c11020f", "metadata": { "ExecuteTime": { "end_time": "2026-04-15T15:20:12.249156Z", "start_time": "2026-04-15T15:19:57.086991Z" }, "execution": { "iopub.execute_input": "2025-11-24T21:53:40.442790Z", "iopub.status.busy": "2025-11-24T21:53:40.442104Z", "iopub.status.idle": "2025-11-24T21:53:43.654085Z", "shell.execute_reply": "2025-11-24T21:53:43.651607Z", "shell.execute_reply.started": "2025-11-24T21:53:40.442728Z" } }, "outputs": [], "source": [ "import pandas as pd\n", "pd.set_option('display.max_rows', None)\n", "import MotifCompendium\n", "MotifCompendium.set_compute_options(max_cpus=16, use_gpu=True, progress_bar=True)\n", "import MotifCompendium.utils.analysis as utils_analysis\n", "import MotifCompendium.utils.plotting as utils_plotting" ] }, { "cell_type": "code", "execution_count": 2, "id": "7a886d64-b253-423a-ac9b-e615a8bd55e7", "metadata": { "ExecuteTime": { "end_time": "2026-04-15T15:20:12.307196Z", "start_time": "2026-04-15T15:20:12.302115Z" }, "execution": { "iopub.execute_input": "2025-11-24T21:51:32.864333Z", "iopub.status.busy": "2025-11-24T21:51:32.863683Z", "iopub.status.idle": "2025-11-24T21:51:32.871344Z", "shell.execute_reply": "2025-11-24T21:51:32.869339Z", "shell.execute_reply.started": "2025-11-24T21:51:32.864277Z" } }, "outputs": [], "source": [ "fusion_er_models = ['Reh_DMSO_HPA', 'Reh_HPA', 'Reh_PAS', 'REH_ETV6-RUNX1_rep2', \n", " 'Reh_ETV6_Atlas', 'Nalm6_ETV6-RUNX1_V5_B']\n", "native_runx1_models = ['Reh_DMSO_RUNX1_native', 'Reh_RUNX1_B_native', \n", " 'REH_RUNX1_rep2_native', 'Nalm6_RUNX1_native']" ] }, { "cell_type": "code", "execution_count": 4, "id": "562f638d", "metadata": { "ExecuteTime": { "end_time": "2026-04-15T15:21:30.412280Z", "start_time": "2026-04-15T15:21:25.509077Z" }, "execution": { "iopub.execute_input": "2025-11-24T21:51:33.616463Z", "iopub.status.busy": "2025-11-24T21:51:33.615802Z", "iopub.status.idle": "2025-11-24T21:51:34.524425Z", "shell.execute_reply": "2025-11-24T21:51:34.522922Z", "shell.execute_reply.started": "2025-11-24T21:51:33.616406Z" }, "scrolled": true }, "outputs": [ { "name": "stderr", "output_type": "stream", "text": [ "computing similarities on GPU...: 100%|██████████| 1/1 [00:04<00:00, 4.68s/it]\n" ] }, { "data": { "text/html": [ "

MotifCompendium with 375 motifs

Motifs = (375, 30, 8)

Metadata

\n", "\n", "\n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", "
namenum_seqletsmodelposnegavg_contribavg_dist_from_summit
0Reh_DMSO_HPA-pos.pattern_0-subpattern_01177Reh_DMSO_HPApos0.42820651.011895
1Reh_DMSO_HPA-pos.pattern_0-subpattern_1778Reh_DMSO_HPApos0.40746545.449871
2Reh_DMSO_HPA-pos.pattern_0-subpattern_10187Reh_DMSO_HPApos0.48541444.919786
3Reh_DMSO_HPA-pos.pattern_0-subpattern_11155Reh_DMSO_HPApos0.47029647.529032
4Reh_DMSO_HPA-pos.pattern_0-subpattern_12135Reh_DMSO_HPApos0.50328638.362963
5Reh_DMSO_HPA-pos.pattern_0-subpattern_13107Reh_DMSO_HPApos0.56422639.785047
6Reh_DMSO_HPA-pos.pattern_0-subpattern_14100Reh_DMSO_HPApos0.56592135.560000
7Reh_DMSO_HPA-pos.pattern_0-subpattern_1585Reh_DMSO_HPApos0.52167440.317647
8Reh_DMSO_HPA-pos.pattern_0-subpattern_1673Reh_DMSO_HPApos0.49934848.657534
9Reh_DMSO_HPA-pos.pattern_0-subpattern_1752Reh_DMSO_HPApos0.64790336.269231
10Reh_DMSO_HPA-pos.pattern_0-subpattern_1850Reh_DMSO_HPApos0.42357843.200000
11Reh_DMSO_HPA-pos.pattern_0-subpattern_2563Reh_DMSO_HPApos0.45674644.687389
12Reh_DMSO_HPA-pos.pattern_0-subpattern_3464Reh_DMSO_HPApos0.40984045.237069
13Reh_DMSO_HPA-pos.pattern_0-subpattern_4285Reh_DMSO_HPApos0.51439240.761404
14Reh_DMSO_HPA-pos.pattern_0-subpattern_5281Reh_DMSO_HPApos0.48921942.177936
15Reh_DMSO_HPA-pos.pattern_0-subpattern_6209Reh_DMSO_HPApos0.53324839.167464
16Reh_DMSO_HPA-pos.pattern_0-subpattern_7205Reh_DMSO_HPApos0.45130245.019512
17Reh_DMSO_HPA-pos.pattern_0-subpattern_8189Reh_DMSO_HPApos0.50471236.761905
18Reh_DMSO_HPA-pos.pattern_0-subpattern_9188Reh_DMSO_HPApos0.52783538.622340
19Reh_DMSO_HPA-pos.pattern_1-subpattern_0182Reh_DMSO_HPApos0.29684848.500000
20Reh_DMSO_HPA-pos.pattern_1-subpattern_1181Reh_DMSO_HPApos0.32829154.281768
21Reh_DMSO_HPA-pos.pattern_1-subpattern_2100Reh_DMSO_HPApos0.28700545.560000
22Reh_DMSO_HPA-pos.pattern_1-subpattern_393Reh_DMSO_HPApos0.40050939.225806
23Reh_DMSO_HPA-pos.pattern_1-subpattern_481Reh_DMSO_HPApos0.37980052.111111
24Reh_DMSO_HPA-pos.pattern_1-subpattern_548Reh_DMSO_HPApos0.40925838.208333
25Reh_DMSO_HPA-pos.pattern_1-subpattern_632Reh_DMSO_HPApos0.31772352.968750
26Reh_DMSO_HPA-pos.pattern_1-subpattern_724Reh_DMSO_HPApos0.41365132.291667
27Reh_DMSO_HPA-pos.pattern_1-subpattern_819Reh_DMSO_HPApos0.51189453.263158
28Reh_DMSO_HPA-pos.pattern_1-subpattern_98Reh_DMSO_HPApos0.59628942.875000
29Reh_DMSO_HPA-pos.pattern_2-subpattern_089Reh_DMSO_HPApos0.40241745.179775
30Reh_DMSO_HPA-pos.pattern_2-subpattern_165Reh_DMSO_HPApos0.48813135.446154
31Reh_DMSO_HPA-pos.pattern_2-subpattern_265Reh_DMSO_HPApos0.39856644.800000
32Reh_DMSO_HPA-pos.pattern_2-subpattern_322Reh_DMSO_HPApos0.49610439.318182
33Reh_DMSO_HPA-pos.pattern_2-subpattern_414Reh_DMSO_HPApos0.62014033.142857
34Reh_DMSO_HPA-pos.pattern_2-subpattern_56Reh_DMSO_HPApos0.59760442.666667
35Reh_DMSO_HPA-pos.pattern_2-subpattern_66Reh_DMSO_HPApos0.95384928.333333
36Reh_DMSO_HPA-pos.pattern_3-subpattern_070Reh_DMSO_HPApos0.57963331.271429
37Reh_DMSO_HPA-pos.pattern_3-subpattern_156Reh_DMSO_HPApos0.58531738.339286
38Reh_DMSO_HPA-pos.pattern_3-subpattern_232Reh_DMSO_HPApos0.44853036.031250
39Reh_DMSO_HPA-pos.pattern_3-subpattern_330Reh_DMSO_HPApos0.76747329.066667
40Reh_DMSO_HPA-pos.pattern_3-subpattern_414Reh_DMSO_HPApos0.77275143.142857
41Reh_DMSO_HPA-pos.pattern_4-subpattern_040Reh_DMSO_HPApos0.86081826.950000
42Reh_DMSO_HPA-pos.pattern_4-subpattern_133Reh_DMSO_HPApos0.69291037.878788
43Reh_DMSO_HPA-pos.pattern_4-subpattern_233Reh_DMSO_HPApos0.66314938.181818
44Reh_DMSO_HPA-pos.pattern_4-subpattern_317Reh_DMSO_HPApos0.52921138.411765
45Reh_DMSO_HPA-pos.pattern_4-subpattern_412Reh_DMSO_HPApos0.76285216.583333
46Reh_DMSO_HPA-pos.pattern_4-subpattern_54Reh_DMSO_HPApos0.80696916.750000
47Reh_DMSO_HPA-pos.pattern_4-subpattern_63Reh_DMSO_HPApos0.6734256.666667
48Reh_DMSO_HPA-pos.pattern_5-subpattern_035Reh_DMSO_HPApos0.35778442.942857
49Reh_HPA-pos.pattern_0-subpattern_0281Reh_HPApos0.12564946.270463
50Reh_HPA-pos.pattern_0-subpattern_1196Reh_HPApos0.12496443.765306
51Reh_HPA-pos.pattern_0-subpattern_1060Reh_HPApos0.12152148.983333
52Reh_HPA-pos.pattern_0-subpattern_1136Reh_HPApos0.11803747.305556
53Reh_HPA-pos.pattern_0-subpattern_128Reh_HPApos0.11616859.750000
54Reh_HPA-pos.pattern_0-subpattern_2179Reh_HPApos0.12838934.340782
55Reh_HPA-pos.pattern_0-subpattern_3159Reh_HPApos0.12011839.484277
56Reh_HPA-pos.pattern_0-subpattern_4156Reh_HPApos0.13813439.878205
57Reh_HPA-pos.pattern_0-subpattern_5129Reh_HPApos0.13162338.310078
58Reh_HPA-pos.pattern_0-subpattern_6119Reh_HPApos0.15563339.798319
59Reh_HPA-pos.pattern_0-subpattern_7116Reh_HPApos0.14952937.862069
60Reh_HPA-pos.pattern_0-subpattern_893Reh_HPApos0.13435336.548387
61Reh_HPA-pos.pattern_0-subpattern_967Reh_HPApos0.13463245.208955
62Reh_HPA-pos.pattern_1-subpattern_046Reh_HPApos0.15117932.739130
63Reh_HPA-pos.pattern_2-subpattern_045Reh_HPApos0.10525639.088889
64Reh_HPA-pos.pattern_3-subpattern_022Reh_HPApos0.10275334.545455
65Reh_HPA-pos.pattern_4-subpattern_021Reh_HPApos0.18533732.952381
66Reh_PAS-pos.pattern_0-subpattern_0315Reh_PASpos0.07533545.155556
67Reh_PAS-pos.pattern_0-subpattern_1199Reh_PASpos0.07875145.316583
68Reh_PAS-pos.pattern_0-subpattern_2166Reh_PASpos0.08263241.271084
69Reh_PAS-pos.pattern_0-subpattern_3162Reh_PASpos0.08674041.407407
70Reh_PAS-pos.pattern_0-subpattern_4155Reh_PASpos0.08356840.696774
71Reh_PAS-pos.pattern_0-subpattern_5144Reh_PASpos0.09041340.451389
72Reh_PAS-pos.pattern_0-subpattern_6104Reh_PASpos0.08574341.990385
73Reh_PAS-pos.pattern_0-subpattern_7104Reh_PASpos0.08581747.682692
74Reh_PAS-pos.pattern_0-subpattern_898Reh_PASpos0.08050943.673469
75Reh_PAS-pos.pattern_0-subpattern_985Reh_PASpos0.08545540.094118
76Reh_PAS-pos.pattern_1-subpattern_045Reh_PASpos0.08922249.288889
77REH_ETV6-RUNX1_rep2-pos.pattern_0-subpattern_0791REH_ETV6-RUNX1_rep2pos0.61988449.704172
78REH_ETV6-RUNX1_rep2-pos.pattern_0-subpattern_1704REH_ETV6-RUNX1_rep2pos0.60463243.363636
79REH_ETV6-RUNX1_rep2-pos.pattern_0-subpattern_10127REH_ETV6-RUNX1_rep2pos0.66545147.417323
80REH_ETV6-RUNX1_rep2-pos.pattern_0-subpattern_11118REH_ETV6-RUNX1_rep2pos0.78123536.872881
81REH_ETV6-RUNX1_rep2-pos.pattern_0-subpattern_12116REH_ETV6-RUNX1_rep2pos0.67500048.663793
82REH_ETV6-RUNX1_rep2-pos.pattern_0-subpattern_1379REH_ETV6-RUNX1_rep2pos0.83974636.329114
83REH_ETV6-RUNX1_rep2-pos.pattern_0-subpattern_1476REH_ETV6-RUNX1_rep2pos0.75314737.065789
84REH_ETV6-RUNX1_rep2-pos.pattern_0-subpattern_1551REH_ETV6-RUNX1_rep2pos0.86334032.745098
85REH_ETV6-RUNX1_rep2-pos.pattern_0-subpattern_1641REH_ETV6-RUNX1_rep2pos0.82800339.853659
86REH_ETV6-RUNX1_rep2-pos.pattern_0-subpattern_1728REH_ETV6-RUNX1_rep2pos0.85104924.392857
87REH_ETV6-RUNX1_rep2-pos.pattern_0-subpattern_2619REH_ETV6-RUNX1_rep2pos0.60426640.515347
88REH_ETV6-RUNX1_rep2-pos.pattern_0-subpattern_3395REH_ETV6-RUNX1_rep2pos0.65334037.073418
89REH_ETV6-RUNX1_rep2-pos.pattern_0-subpattern_4323REH_ETV6-RUNX1_rep2pos0.63299641.959752
90REH_ETV6-RUNX1_rep2-pos.pattern_0-subpattern_5320REH_ETV6-RUNX1_rep2pos0.77464637.968750
91REH_ETV6-RUNX1_rep2-pos.pattern_0-subpattern_6309REH_ETV6-RUNX1_rep2pos0.59865844.436893
92REH_ETV6-RUNX1_rep2-pos.pattern_0-subpattern_7203REH_ETV6-RUNX1_rep2pos0.78067333.098522
93REH_ETV6-RUNX1_rep2-pos.pattern_0-subpattern_8168REH_ETV6-RUNX1_rep2pos0.78819733.988095
94REH_ETV6-RUNX1_rep2-pos.pattern_0-subpattern_9166REH_ETV6-RUNX1_rep2pos0.64140837.765060
95REH_ETV6-RUNX1_rep2-pos.pattern_1-subpattern_0132REH_ETV6-RUNX1_rep2pos0.61388742.757576
96REH_ETV6-RUNX1_rep2-pos.pattern_1-subpattern_1119REH_ETV6-RUNX1_rep2pos0.82913540.075630
97REH_ETV6-RUNX1_rep2-pos.pattern_1-subpattern_260REH_ETV6-RUNX1_rep2pos0.55163540.116667
98REH_ETV6-RUNX1_rep2-pos.pattern_1-subpattern_350REH_ETV6-RUNX1_rep2pos0.62290133.980000
99REH_ETV6-RUNX1_rep2-pos.pattern_1-subpattern_437REH_ETV6-RUNX1_rep2pos0.69326930.594595
100REH_ETV6-RUNX1_rep2-pos.pattern_1-subpattern_536REH_ETV6-RUNX1_rep2pos0.59141151.416667
101REH_ETV6-RUNX1_rep2-pos.pattern_1-subpattern_633REH_ETV6-RUNX1_rep2pos0.55218836.060606
102REH_ETV6-RUNX1_rep2-pos.pattern_1-subpattern_720REH_ETV6-RUNX1_rep2pos0.73854724.050000
103REH_ETV6-RUNX1_rep2-pos.pattern_1-subpattern_811REH_ETV6-RUNX1_rep2pos0.79651128.636364
104REH_ETV6-RUNX1_rep2-pos.pattern_2-subpattern_0123REH_ETV6-RUNX1_rep2pos0.43066148.837398
105REH_ETV6-RUNX1_rep2-pos.pattern_2-subpattern_1116REH_ETV6-RUNX1_rep2pos0.42989152.431034
106REH_ETV6-RUNX1_rep2-pos.pattern_2-subpattern_269REH_ETV6-RUNX1_rep2pos0.41158648.159420
107REH_ETV6-RUNX1_rep2-pos.pattern_2-subpattern_339REH_ETV6-RUNX1_rep2pos0.38918250.717949
108REH_ETV6-RUNX1_rep2-pos.pattern_2-subpattern_420REH_ETV6-RUNX1_rep2pos0.62626752.500000
109REH_ETV6-RUNX1_rep2-pos.pattern_3-subpattern_069REH_ETV6-RUNX1_rep2pos1.22505620.507246
110REH_ETV6-RUNX1_rep2-pos.pattern_3-subpattern_168REH_ETV6-RUNX1_rep2pos0.86634039.764706
111REH_ETV6-RUNX1_rep2-pos.pattern_3-subpattern_240REH_ETV6-RUNX1_rep2pos0.85313638.025000
112REH_ETV6-RUNX1_rep2-pos.pattern_3-subpattern_335REH_ETV6-RUNX1_rep2pos1.25393623.171429
113REH_ETV6-RUNX1_rep2-pos.pattern_3-subpattern_415REH_ETV6-RUNX1_rep2pos1.04523824.266667
114REH_ETV6-RUNX1_rep2-pos.pattern_3-subpattern_512REH_ETV6-RUNX1_rep2pos0.93876536.250000
115REH_ETV6-RUNX1_rep2-pos.pattern_3-subpattern_62REH_ETV6-RUNX1_rep2pos1.05493158.500000
116REH_ETV6-RUNX1_rep2-pos.pattern_4-subpattern_071REH_ETV6-RUNX1_rep2pos1.04747732.802817
117REH_ETV6-RUNX1_rep2-pos.pattern_4-subpattern_168REH_ETV6-RUNX1_rep2pos0.74361536.602941
118REH_ETV6-RUNX1_rep2-pos.pattern_4-subpattern_230REH_ETV6-RUNX1_rep2pos0.84715544.233333
119REH_ETV6-RUNX1_rep2-pos.pattern_4-subpattern_329REH_ETV6-RUNX1_rep2pos0.69798940.379310
120REH_ETV6-RUNX1_rep2-pos.pattern_4-subpattern_420REH_ETV6-RUNX1_rep2pos1.00755941.300000
121REH_ETV6-RUNX1_rep2-pos.pattern_4-subpattern_511REH_ETV6-RUNX1_rep2pos0.92600533.090909
122REH_ETV6-RUNX1_rep2-pos.pattern_4-subpattern_62REH_ETV6-RUNX1_rep2pos0.40122227.500000
123REH_ETV6-RUNX1_rep2-pos.pattern_5-subpattern_049REH_ETV6-RUNX1_rep2pos0.89545933.673469
124REH_ETV6-RUNX1_rep2-pos.pattern_5-subpattern_141REH_ETV6-RUNX1_rep2pos1.04646230.853659
125REH_ETV6-RUNX1_rep2-pos.pattern_5-subpattern_220REH_ETV6-RUNX1_rep2pos1.48714813.050000
126REH_ETV6-RUNX1_rep2-pos.pattern_5-subpattern_38REH_ETV6-RUNX1_rep2pos0.98944921.250000
127REH_ETV6-RUNX1_rep2-pos.pattern_5-subpattern_45REH_ETV6-RUNX1_rep2pos0.40424837.200000
128REH_ETV6-RUNX1_rep2-pos.pattern_5-subpattern_55REH_ETV6-RUNX1_rep2pos0.60694546.600000
129REH_ETV6-RUNX1_rep2-pos.pattern_5-subpattern_62REH_ETV6-RUNX1_rep2pos0.65768853.500000
130REH_ETV6-RUNX1_rep2-pos.pattern_6-subpattern_036REH_ETV6-RUNX1_rep2pos0.55075235.027778
131REH_ETV6-RUNX1_rep2-pos.pattern_6-subpattern_134REH_ETV6-RUNX1_rep2pos0.49807846.647059
132REH_ETV6-RUNX1_rep2-pos.pattern_6-subpattern_26REH_ETV6-RUNX1_rep2pos0.41054251.500000
133REH_ETV6-RUNX1_rep2-pos.pattern_7-subpattern_023REH_ETV6-RUNX1_rep2pos0.98194730.652174
134REH_ETV6-RUNX1_rep2-pos.pattern_7-subpattern_118REH_ETV6-RUNX1_rep2pos0.59920028.722222
135REH_ETV6-RUNX1_rep2-pos.pattern_7-subpattern_215REH_ETV6-RUNX1_rep2pos0.84403934.866667
136REH_ETV6-RUNX1_rep2-pos.pattern_7-subpattern_32REH_ETV6-RUNX1_rep2pos0.53828349.500000
137REH_ETV6-RUNX1_rep2-pos.pattern_8-subpattern_023REH_ETV6-RUNX1_rep2pos0.48647041.869565
138Reh_ETV6_Atlas-pos.pattern_0-subpattern_0128Reh_ETV6_Atlaspos0.02103454.687500
139Reh_ETV6_Atlas-pos.pattern_0-subpattern_1124Reh_ETV6_Atlaspos0.02169460.008065
140Reh_ETV6_Atlas-pos.pattern_0-subpattern_2115Reh_ETV6_Atlaspos0.02073957.608696
141Reh_ETV6_Atlas-pos.pattern_0-subpattern_3110Reh_ETV6_Atlaspos0.01992449.790909
142Reh_ETV6_Atlas-pos.pattern_0-subpattern_496Reh_ETV6_Atlaspos0.02203562.729167
143Reh_ETV6_Atlas-pos.pattern_0-subpattern_592Reh_ETV6_Atlaspos0.02105649.728261
144Reh_ETV6_Atlas-pos.pattern_0-subpattern_630Reh_ETV6_Atlaspos0.02071261.566667
145Reh_ETV6_Atlas-pos.pattern_0-subpattern_718Reh_ETV6_Atlaspos0.02201951.111111
146Reh_ETV6_Atlas-pos.pattern_1-subpattern_0101Reh_ETV6_Atlaspos0.02028466.920792
147Reh_ETV6_Atlas-pos.pattern_1-subpattern_198Reh_ETV6_Atlaspos0.02280862.377551
148Reh_ETV6_Atlas-pos.pattern_1-subpattern_289Reh_ETV6_Atlaspos0.02097066.404494
149Reh_ETV6_Atlas-pos.pattern_1-subpattern_377Reh_ETV6_Atlaspos0.02169569.792208
150Reh_ETV6_Atlas-pos.pattern_1-subpattern_467Reh_ETV6_Atlaspos0.01994858.567164
151Reh_ETV6_Atlas-pos.pattern_1-subpattern_555Reh_ETV6_Atlaspos0.02092461.654545
152Reh_ETV6_Atlas-pos.pattern_1-subpattern_644Reh_ETV6_Atlaspos0.02102047.522727
153Reh_ETV6_Atlas-pos.pattern_1-subpattern_74Reh_ETV6_Atlaspos0.01768655.500000
154Reh_ETV6_Atlas-pos.pattern_10-subpattern_018Reh_ETV6_Atlaspos0.01762888.666667
155Reh_ETV6_Atlas-pos.pattern_10-subpattern_118Reh_ETV6_Atlaspos0.02841468.666667
156Reh_ETV6_Atlas-pos.pattern_10-subpattern_216Reh_ETV6_Atlaspos0.02032570.625000
157Reh_ETV6_Atlas-pos.pattern_10-subpattern_38Reh_ETV6_Atlaspos0.01831878.625000
158Reh_ETV6_Atlas-pos.pattern_11-subpattern_024Reh_ETV6_Atlaspos0.02434778.291667
159Reh_ETV6_Atlas-pos.pattern_11-subpattern_118Reh_ETV6_Atlaspos0.01823563.777778
160Reh_ETV6_Atlas-pos.pattern_11-subpattern_215Reh_ETV6_Atlaspos0.02069251.800000
161Reh_ETV6_Atlas-pos.pattern_12-subpattern_028Reh_ETV6_Atlaspos0.02129159.464286
162Reh_ETV6_Atlas-pos.pattern_12-subpattern_127Reh_ETV6_Atlaspos0.02035257.185185
163Reh_ETV6_Atlas-pos.pattern_13-subpattern_025Reh_ETV6_Atlaspos0.02452060.400000
164Reh_ETV6_Atlas-pos.pattern_2-subpattern_099Reh_ETV6_Atlaspos0.02179654.191919
165Reh_ETV6_Atlas-pos.pattern_2-subpattern_184Reh_ETV6_Atlaspos0.02431871.607143
166Reh_ETV6_Atlas-pos.pattern_2-subpattern_279Reh_ETV6_Atlaspos0.02244467.911392
167Reh_ETV6_Atlas-pos.pattern_2-subpattern_371Reh_ETV6_Atlaspos0.02038557.028169
168Reh_ETV6_Atlas-pos.pattern_2-subpattern_467Reh_ETV6_Atlaspos0.02368470.552239
169Reh_ETV6_Atlas-pos.pattern_2-subpattern_546Reh_ETV6_Atlaspos0.02188644.195652
170Reh_ETV6_Atlas-pos.pattern_2-subpattern_67Reh_ETV6_Atlaspos0.01578470.571429
171Reh_ETV6_Atlas-pos.pattern_3-subpattern_043Reh_ETV6_Atlaspos0.01974853.255814
172Reh_ETV6_Atlas-pos.pattern_3-subpattern_140Reh_ETV6_Atlaspos0.02375050.125000
173Reh_ETV6_Atlas-pos.pattern_3-subpattern_227Reh_ETV6_Atlaspos0.02428849.370370
174Reh_ETV6_Atlas-pos.pattern_3-subpattern_326Reh_ETV6_Atlaspos0.02219462.730769
175Reh_ETV6_Atlas-pos.pattern_3-subpattern_418Reh_ETV6_Atlaspos0.02604269.888889
176Reh_ETV6_Atlas-pos.pattern_3-subpattern_513Reh_ETV6_Atlaspos0.02134040.307692
177Reh_ETV6_Atlas-pos.pattern_3-subpattern_63Reh_ETV6_Atlaspos0.03402430.333333
178Reh_ETV6_Atlas-pos.pattern_4-subpattern_037Reh_ETV6_Atlaspos0.03174959.135135
179Reh_ETV6_Atlas-pos.pattern_4-subpattern_134Reh_ETV6_Atlaspos0.02873580.294118
180Reh_ETV6_Atlas-pos.pattern_4-subpattern_223Reh_ETV6_Atlaspos0.02136360.869565
181Reh_ETV6_Atlas-pos.pattern_4-subpattern_322Reh_ETV6_Atlaspos0.02377877.409091
182Reh_ETV6_Atlas-pos.pattern_4-subpattern_418Reh_ETV6_Atlaspos0.02415683.444444
183Reh_ETV6_Atlas-pos.pattern_4-subpattern_57Reh_ETV6_Atlaspos0.02375272.285714
184Reh_ETV6_Atlas-pos.pattern_5-subpattern_026Reh_ETV6_Atlaspos0.02087561.115385
185Reh_ETV6_Atlas-pos.pattern_5-subpattern_125Reh_ETV6_Atlaspos0.02320869.760000
186Reh_ETV6_Atlas-pos.pattern_5-subpattern_225Reh_ETV6_Atlaspos0.02053252.240000
187Reh_ETV6_Atlas-pos.pattern_5-subpattern_325Reh_ETV6_Atlaspos0.02453068.200000
188Reh_ETV6_Atlas-pos.pattern_5-subpattern_416Reh_ETV6_Atlaspos0.02340157.312500
189Reh_ETV6_Atlas-pos.pattern_5-subpattern_56Reh_ETV6_Atlaspos0.02142954.500000
190Reh_ETV6_Atlas-pos.pattern_5-subpattern_63Reh_ETV6_Atlaspos0.01861816.333333
191Reh_ETV6_Atlas-pos.pattern_6-subpattern_028Reh_ETV6_Atlaspos0.01974070.500000
192Reh_ETV6_Atlas-pos.pattern_6-subpattern_125Reh_ETV6_Atlaspos0.02292354.760000
193Reh_ETV6_Atlas-pos.pattern_6-subpattern_224Reh_ETV6_Atlaspos0.02337968.541667
194Reh_ETV6_Atlas-pos.pattern_6-subpattern_318Reh_ETV6_Atlaspos0.02059967.166667
195Reh_ETV6_Atlas-pos.pattern_6-subpattern_47Reh_ETV6_Atlaspos0.01779983.857143
196Reh_ETV6_Atlas-pos.pattern_6-subpattern_55Reh_ETV6_Atlaspos0.01913061.600000
197Reh_ETV6_Atlas-pos.pattern_7-subpattern_015Reh_ETV6_Atlaspos0.01625862.000000
198Reh_ETV6_Atlas-pos.pattern_7-subpattern_114Reh_ETV6_Atlaspos0.02261156.642857
199Reh_ETV6_Atlas-pos.pattern_7-subpattern_213Reh_ETV6_Atlaspos0.02348463.461538
200Reh_ETV6_Atlas-pos.pattern_7-subpattern_312Reh_ETV6_Atlaspos0.02161359.416667
201Reh_ETV6_Atlas-pos.pattern_7-subpattern_49Reh_ETV6_Atlaspos0.02013871.000000
202Reh_ETV6_Atlas-pos.pattern_7-subpattern_59Reh_ETV6_Atlaspos0.02154272.333333
203Reh_ETV6_Atlas-pos.pattern_8-subpattern_026Reh_ETV6_Atlaspos0.02189955.346154
204Reh_ETV6_Atlas-pos.pattern_8-subpattern_123Reh_ETV6_Atlaspos0.02348171.304348
205Reh_ETV6_Atlas-pos.pattern_8-subpattern_217Reh_ETV6_Atlaspos0.02317577.647059
206Reh_ETV6_Atlas-pos.pattern_9-subpattern_018Reh_ETV6_Atlaspos0.02029954.833333
207Reh_ETV6_Atlas-pos.pattern_9-subpattern_116Reh_ETV6_Atlaspos0.01892965.562500
208Reh_ETV6_Atlas-pos.pattern_9-subpattern_215Reh_ETV6_Atlaspos0.02677362.000000
209Reh_ETV6_Atlas-pos.pattern_9-subpattern_311Reh_ETV6_Atlaspos0.03079849.636364
210Reh_ETV6_Atlas-pos.pattern_9-subpattern_42Reh_ETV6_Atlaspos0.01483227.000000
211Nalm6_ETV6-RUNX1_V5_B-pos.pattern_0-subpattern_0882Nalm6_ETV6-RUNX1_V5_Bpos0.50548447.507937
212Nalm6_ETV6-RUNX1_V5_B-pos.pattern_0-subpattern_1761Nalm6_ETV6-RUNX1_V5_Bpos0.50378339.771353
213Nalm6_ETV6-RUNX1_V5_B-pos.pattern_0-subpattern_10105Nalm6_ETV6-RUNX1_V5_Bpos0.58057136.076190
214Nalm6_ETV6-RUNX1_V5_B-pos.pattern_0-subpattern_1189Nalm6_ETV6-RUNX1_V5_Bpos0.61825837.550562
215Nalm6_ETV6-RUNX1_V5_B-pos.pattern_0-subpattern_1286Nalm6_ETV6-RUNX1_V5_Bpos0.64161030.534884
216Nalm6_ETV6-RUNX1_V5_B-pos.pattern_0-subpattern_1358Nalm6_ETV6-RUNX1_V5_Bpos0.59407740.396552
217Nalm6_ETV6-RUNX1_V5_B-pos.pattern_0-subpattern_1456Nalm6_ETV6-RUNX1_V5_Bpos0.58210028.678571
218Nalm6_ETV6-RUNX1_V5_B-pos.pattern_0-subpattern_2585Nalm6_ETV6-RUNX1_V5_Bpos0.50908844.979487
219Nalm6_ETV6-RUNX1_V5_B-pos.pattern_0-subpattern_3310Nalm6_ETV6-RUNX1_V5_Bpos0.56347236.674194
220Nalm6_ETV6-RUNX1_V5_B-pos.pattern_0-subpattern_4237Nalm6_ETV6-RUNX1_V5_Bpos0.56109735.742616
221Nalm6_ETV6-RUNX1_V5_B-pos.pattern_0-subpattern_5215Nalm6_ETV6-RUNX1_V5_Bpos0.51593638.693023
222Nalm6_ETV6-RUNX1_V5_B-pos.pattern_0-subpattern_6196Nalm6_ETV6-RUNX1_V5_Bpos0.58500234.137755
223Nalm6_ETV6-RUNX1_V5_B-pos.pattern_0-subpattern_7193Nalm6_ETV6-RUNX1_V5_Bpos0.53931240.388601
224Nalm6_ETV6-RUNX1_V5_B-pos.pattern_0-subpattern_8142Nalm6_ETV6-RUNX1_V5_Bpos0.58959836.415493
225Nalm6_ETV6-RUNX1_V5_B-pos.pattern_0-subpattern_9131Nalm6_ETV6-RUNX1_V5_Bpos0.54860243.893130
226Nalm6_ETV6-RUNX1_V5_B-pos.pattern_1-subpattern_049Nalm6_ETV6-RUNX1_V5_Bpos0.44856837.285714
227Nalm6_ETV6-RUNX1_V5_B-pos.pattern_1-subpattern_146Nalm6_ETV6-RUNX1_V5_Bpos0.50845339.065217
228Nalm6_ETV6-RUNX1_V5_B-pos.pattern_1-subpattern_236Nalm6_ETV6-RUNX1_V5_Bpos0.48064728.861111
229Nalm6_ETV6-RUNX1_V5_B-pos.pattern_1-subpattern_332Nalm6_ETV6-RUNX1_V5_Bpos0.48867026.593750
230Nalm6_ETV6-RUNX1_V5_B-pos.pattern_1-subpattern_428Nalm6_ETV6-RUNX1_V5_Bpos0.55805043.071429
231Nalm6_ETV6-RUNX1_V5_B-pos.pattern_1-subpattern_55Nalm6_ETV6-RUNX1_V5_Bpos0.4073067.400000
232Nalm6_ETV6-RUNX1_V5_B-pos.pattern_2-subpattern_029Nalm6_ETV6-RUNX1_V5_Bpos0.73758334.344828
233Nalm6_ETV6-RUNX1_V5_B-pos.pattern_2-subpattern_124Nalm6_ETV6-RUNX1_V5_Bpos0.66018434.458333
234Nalm6_ETV6-RUNX1_V5_B-pos.pattern_2-subpattern_218Nalm6_ETV6-RUNX1_V5_Bpos0.78910148.166667
235Nalm6_ETV6-RUNX1_V5_B-pos.pattern_2-subpattern_317Nalm6_ETV6-RUNX1_V5_Bpos0.59399726.705882
236Nalm6_ETV6-RUNX1_V5_B-pos.pattern_3-subpattern_030Nalm6_ETV6-RUNX1_V5_Bpos0.67607544.433333
237Nalm6_ETV6-RUNX1_V5_B-pos.pattern_3-subpattern_124Nalm6_ETV6-RUNX1_V5_Bpos0.60567439.333333
238Nalm6_ETV6-RUNX1_V5_B-pos.pattern_3-subpattern_210Nalm6_ETV6-RUNX1_V5_Bpos0.71855731.600000
239Nalm6_ETV6-RUNX1_V5_B-pos.pattern_3-subpattern_34Nalm6_ETV6-RUNX1_V5_Bpos0.56564460.000000
240Nalm6_ETV6-RUNX1_V5_B-pos.pattern_4-subpattern_024Nalm6_ETV6-RUNX1_V5_Bpos0.59709035.875000
241Reh_DMSO_RUNX1_native-pos.pattern_0-subpattern_0869Reh_DMSO_RUNX1_nativepos0.10729443.380898
242Reh_DMSO_RUNX1_native-pos.pattern_0-subpattern_1777Reh_DMSO_RUNX1_nativepos0.09359646.756757
243Reh_DMSO_RUNX1_native-pos.pattern_0-subpattern_2283Reh_DMSO_RUNX1_nativepos0.09645751.600707
244Reh_DMSO_RUNX1_native-pos.pattern_0-subpattern_3216Reh_DMSO_RUNX1_nativepos0.09803855.870370
245Reh_DMSO_RUNX1_native-pos.pattern_0-subpattern_4132Reh_DMSO_RUNX1_nativepos0.10371449.992424
246Reh_DMSO_RUNX1_native-pos.pattern_0-subpattern_586Reh_DMSO_RUNX1_nativepos0.11122544.500000
247Reh_DMSO_RUNX1_native-pos.pattern_0-subpattern_685Reh_DMSO_RUNX1_nativepos0.12649039.270588
248Reh_DMSO_RUNX1_native-pos.pattern_0-subpattern_726Reh_DMSO_RUNX1_nativepos0.11739644.923077
249Reh_DMSO_RUNX1_native-pos.pattern_0-subpattern_82Reh_DMSO_RUNX1_nativepos0.03549118.000000
250Reh_DMSO_RUNX1_native-pos.pattern_0-subpattern_92Reh_DMSO_RUNX1_nativepos0.18846128.500000
251Reh_RUNX1_B_native-pos.pattern_0-subpattern_0953Reh_RUNX1_B_nativepos0.21329230.804827
252Reh_RUNX1_B_native-pos.pattern_0-subpattern_1895Reh_RUNX1_B_nativepos0.14425631.491620
253Reh_RUNX1_B_native-pos.pattern_0-subpattern_2832Reh_RUNX1_B_nativepos0.11480033.182692
254Reh_RUNX1_B_native-pos.pattern_0-subpattern_3825Reh_RUNX1_B_nativepos0.14376735.166061
255Reh_RUNX1_B_native-pos.pattern_0-subpattern_435Reh_RUNX1_B_nativepos0.15308132.228571
256Reh_RUNX1_B_native-pos.pattern_0-subpattern_527Reh_RUNX1_B_nativepos0.19925937.000000
257Reh_RUNX1_B_native-pos.pattern_0-subpattern_619Reh_RUNX1_B_nativepos0.24319438.263158
258Reh_RUNX1_B_native-pos.pattern_0-subpattern_79Reh_RUNX1_B_nativepos0.13583155.222222
259Reh_RUNX1_B_native-pos.pattern_0-subpattern_87Reh_RUNX1_B_nativepos0.09265241.285714
260REH_RUNX1_rep2_native-pos.pattern_0-subpattern_0966REH_RUNX1_rep2_nativepos0.16241937.979296
261REH_RUNX1_rep2_native-pos.pattern_0-subpattern_1835REH_RUNX1_rep2_nativepos0.16991640.026347
262REH_RUNX1_rep2_native-pos.pattern_0-subpattern_10128REH_RUNX1_rep2_nativepos0.20181734.765625
263REH_RUNX1_rep2_native-pos.pattern_0-subpattern_11107REH_RUNX1_rep2_nativepos0.18711234.579439
264REH_RUNX1_rep2_native-pos.pattern_0-subpattern_12101REH_RUNX1_rep2_nativepos0.23632533.504950
265REH_RUNX1_rep2_native-pos.pattern_0-subpattern_1389REH_RUNX1_rep2_nativepos0.22848634.011236
266REH_RUNX1_rep2_native-pos.pattern_0-subpattern_1488REH_RUNX1_rep2_nativepos0.16069946.102273
267REH_RUNX1_rep2_native-pos.pattern_0-subpattern_1583REH_RUNX1_rep2_nativepos0.24315936.710843
268REH_RUNX1_rep2_native-pos.pattern_0-subpattern_1680REH_RUNX1_rep2_nativepos0.17438736.587500
269REH_RUNX1_rep2_native-pos.pattern_0-subpattern_1762REH_RUNX1_rep2_nativepos0.19509636.677419
270REH_RUNX1_rep2_native-pos.pattern_0-subpattern_1857REH_RUNX1_rep2_nativepos0.19805236.157895
271REH_RUNX1_rep2_native-pos.pattern_0-subpattern_2661REH_RUNX1_rep2_nativepos0.17021146.888048
272REH_RUNX1_rep2_native-pos.pattern_0-subpattern_3342REH_RUNX1_rep2_nativepos0.13653640.947368
273REH_RUNX1_rep2_native-pos.pattern_0-subpattern_4273REH_RUNX1_rep2_nativepos0.22259836.560440
274REH_RUNX1_rep2_native-pos.pattern_0-subpattern_5238REH_RUNX1_rep2_nativepos0.22289036.928571
275REH_RUNX1_rep2_native-pos.pattern_0-subpattern_6202REH_RUNX1_rep2_nativepos0.18671940.594059
276REH_RUNX1_rep2_native-pos.pattern_0-subpattern_7190REH_RUNX1_rep2_nativepos0.22990933.605263
277REH_RUNX1_rep2_native-pos.pattern_0-subpattern_8172REH_RUNX1_rep2_nativepos0.21585239.000000
278REH_RUNX1_rep2_native-pos.pattern_0-subpattern_9140REH_RUNX1_rep2_nativepos0.22271529.121429
279REH_RUNX1_rep2_native-pos.pattern_1-subpattern_089REH_RUNX1_rep2_nativepos0.25412930.640449
280REH_RUNX1_rep2_native-pos.pattern_1-subpattern_183REH_RUNX1_rep2_nativepos0.31403229.469880
281REH_RUNX1_rep2_native-pos.pattern_1-subpattern_233REH_RUNX1_rep2_nativepos0.18154859.060606
282REH_RUNX1_rep2_native-pos.pattern_1-subpattern_311REH_RUNX1_rep2_nativepos0.28368423.181818
283REH_RUNX1_rep2_native-pos.pattern_1-subpattern_42REH_RUNX1_rep2_nativepos0.24323233.500000
284REH_RUNX1_rep2_native-pos.pattern_2-subpattern_056REH_RUNX1_rep2_nativepos0.23850130.892857
285REH_RUNX1_rep2_native-pos.pattern_2-subpattern_139REH_RUNX1_rep2_nativepos0.35527631.948718
286REH_RUNX1_rep2_native-pos.pattern_2-subpattern_231REH_RUNX1_rep2_nativepos0.27706236.677419
287REH_RUNX1_rep2_native-pos.pattern_2-subpattern_329REH_RUNX1_rep2_nativepos0.46471417.896552
288REH_RUNX1_rep2_native-pos.pattern_2-subpattern_410REH_RUNX1_rep2_nativepos0.13195057.600000
289REH_RUNX1_rep2_native-pos.pattern_2-subpattern_54REH_RUNX1_rep2_nativepos0.08735641.250000
290REH_RUNX1_rep2_native-pos.pattern_2-subpattern_62REH_RUNX1_rep2_nativepos0.19163618.000000
291REH_RUNX1_rep2_native-pos.pattern_3-subpattern_033REH_RUNX1_rep2_nativepos0.23490134.727273
292REH_RUNX1_rep2_native-pos.pattern_3-subpattern_133REH_RUNX1_rep2_nativepos0.11845841.666667
293REH_RUNX1_rep2_native-pos.pattern_3-subpattern_220REH_RUNX1_rep2_nativepos0.12129547.400000
294REH_RUNX1_rep2_native-pos.pattern_3-subpattern_319REH_RUNX1_rep2_nativepos0.11484135.263158
295REH_RUNX1_rep2_native-pos.pattern_3-subpattern_413REH_RUNX1_rep2_nativepos0.12091667.692308
296REH_RUNX1_rep2_native-pos.pattern_3-subpattern_511REH_RUNX1_rep2_nativepos0.15703048.181818
297REH_RUNX1_rep2_native-pos.pattern_4-subpattern_022REH_RUNX1_rep2_nativepos0.29852624.227273
298REH_RUNX1_rep2_native-pos.pattern_4-subpattern_115REH_RUNX1_rep2_nativepos0.18347921.866667
299REH_RUNX1_rep2_native-pos.pattern_4-subpattern_212REH_RUNX1_rep2_nativepos0.30434225.750000
300REH_RUNX1_rep2_native-pos.pattern_4-subpattern_39REH_RUNX1_rep2_nativepos0.20724943.222222
301REH_RUNX1_rep2_native-pos.pattern_4-subpattern_47REH_RUNX1_rep2_nativepos0.17811328.571429
302REH_RUNX1_rep2_native-pos.pattern_5-subpattern_023REH_RUNX1_rep2_nativepos0.35530924.782609
303REH_RUNX1_rep2_native-pos.pattern_5-subpattern_115REH_RUNX1_rep2_nativepos0.22676135.533333
304REH_RUNX1_rep2_native-pos.pattern_5-subpattern_214REH_RUNX1_rep2_nativepos0.23225439.642857
305REH_RUNX1_rep2_native-pos.pattern_5-subpattern_311REH_RUNX1_rep2_nativepos0.16463142.727273
306REH_RUNX1_rep2_native-pos.pattern_6-subpattern_028REH_RUNX1_rep2_nativepos0.15055443.821429
307REH_RUNX1_rep2_native-pos.pattern_6-subpattern_121REH_RUNX1_rep2_nativepos0.17255978.904762
308REH_RUNX1_rep2_native-pos.pattern_6-subpattern_27REH_RUNX1_rep2_nativepos0.118361105.428571
309REH_RUNX1_rep2_native-pos.pattern_6-subpattern_32REH_RUNX1_rep2_nativepos0.10400341.500000
310REH_RUNX1_rep2_native-pos.pattern_7-subpattern_037REH_RUNX1_rep2_nativepos0.18902539.918919
311REH_RUNX1_rep2_native-pos.pattern_8-subpattern_022REH_RUNX1_rep2_nativepos0.22309533.590909
312REH_RUNX1_rep2_native-pos.pattern_9-subpattern_022REH_RUNX1_rep2_nativepos0.32706228.000000
313Nalm6_RUNX1_native-pos.pattern_0-subpattern_0604Nalm6_RUNX1_nativepos0.19120926.586093
314Nalm6_RUNX1_native-pos.pattern_0-subpattern_1558Nalm6_RUNX1_nativepos0.30802530.772401
315Nalm6_RUNX1_native-pos.pattern_0-subpattern_1049Nalm6_RUNX1_nativepos0.26729621.020408
316Nalm6_RUNX1_native-pos.pattern_0-subpattern_1143Nalm6_RUNX1_nativepos0.29235926.302326
317Nalm6_RUNX1_native-pos.pattern_0-subpattern_2554Nalm6_RUNX1_nativepos0.18021129.447653
318Nalm6_RUNX1_native-pos.pattern_0-subpattern_3190Nalm6_RUNX1_nativepos0.29042924.500000
319Nalm6_RUNX1_native-pos.pattern_0-subpattern_4121Nalm6_RUNX1_nativepos0.30989624.892562
320Nalm6_RUNX1_native-pos.pattern_0-subpattern_5117Nalm6_RUNX1_nativepos0.31058522.111111
321Nalm6_RUNX1_native-pos.pattern_0-subpattern_693Nalm6_RUNX1_nativepos0.29322821.397849
322Nalm6_RUNX1_native-pos.pattern_0-subpattern_791Nalm6_RUNX1_nativepos0.29497021.186813
323Nalm6_RUNX1_native-pos.pattern_0-subpattern_878Nalm6_RUNX1_nativepos0.30074226.692308
324Nalm6_RUNX1_native-pos.pattern_0-subpattern_969Nalm6_RUNX1_nativepos0.25393824.652174
325Nalm6_RUNX1_native-pos.pattern_1-subpattern_0551Nalm6_RUNX1_nativepos0.11698252.012704
326Nalm6_RUNX1_native-pos.pattern_1-subpattern_1451Nalm6_RUNX1_nativepos0.17508251.084257
327Nalm6_RUNX1_native-pos.pattern_1-subpattern_103Nalm6_RUNX1_nativepos0.11491347.333333
328Nalm6_RUNX1_native-pos.pattern_1-subpattern_2236Nalm6_RUNX1_nativepos0.12740151.088983
329Nalm6_RUNX1_native-pos.pattern_1-subpattern_3154Nalm6_RUNX1_nativepos0.20982142.149351
330Nalm6_RUNX1_native-pos.pattern_1-subpattern_4137Nalm6_RUNX1_nativepos0.23454839.985401
331Nalm6_RUNX1_native-pos.pattern_1-subpattern_577Nalm6_RUNX1_nativepos0.23274732.480519
332Nalm6_RUNX1_native-pos.pattern_1-subpattern_666Nalm6_RUNX1_nativepos0.22215943.636364
333Nalm6_RUNX1_native-pos.pattern_1-subpattern_756Nalm6_RUNX1_nativepos0.26305836.035714
334Nalm6_RUNX1_native-pos.pattern_1-subpattern_823Nalm6_RUNX1_nativepos0.24283033.565217
335Nalm6_RUNX1_native-pos.pattern_1-subpattern_916Nalm6_RUNX1_nativepos0.16385225.687500
336Nalm6_RUNX1_native-pos.pattern_2-subpattern_0169Nalm6_RUNX1_nativepos0.18147344.420118
337Nalm6_RUNX1_native-pos.pattern_2-subpattern_1140Nalm6_RUNX1_nativepos0.15431741.685714
338Nalm6_RUNX1_native-pos.pattern_2-subpattern_1014Nalm6_RUNX1_nativepos0.22794621.928571
339Nalm6_RUNX1_native-pos.pattern_2-subpattern_2133Nalm6_RUNX1_nativepos0.15119947.887218
340Nalm6_RUNX1_native-pos.pattern_2-subpattern_3131Nalm6_RUNX1_nativepos0.14337544.381679
341Nalm6_RUNX1_native-pos.pattern_2-subpattern_4122Nalm6_RUNX1_nativepos0.15025653.942623
342Nalm6_RUNX1_native-pos.pattern_2-subpattern_5107Nalm6_RUNX1_nativepos0.14696151.654206
343Nalm6_RUNX1_native-pos.pattern_2-subpattern_626Nalm6_RUNX1_nativepos0.26070329.000000
344Nalm6_RUNX1_native-pos.pattern_2-subpattern_722Nalm6_RUNX1_nativepos0.28840619.272727
345Nalm6_RUNX1_native-pos.pattern_2-subpattern_821Nalm6_RUNX1_nativepos0.32117322.809524
346Nalm6_RUNX1_native-pos.pattern_2-subpattern_916Nalm6_RUNX1_nativepos0.22057737.250000
347Nalm6_RUNX1_native-pos.pattern_3-subpattern_0140Nalm6_RUNX1_nativepos0.12586343.692857
348Nalm6_RUNX1_native-pos.pattern_3-subpattern_1123Nalm6_RUNX1_nativepos0.22446430.357724
349Nalm6_RUNX1_native-pos.pattern_3-subpattern_2107Nalm6_RUNX1_nativepos0.14218151.233645
350Nalm6_RUNX1_native-pos.pattern_3-subpattern_390Nalm6_RUNX1_nativepos0.19071152.388889
351Nalm6_RUNX1_native-pos.pattern_3-subpattern_484Nalm6_RUNX1_nativepos0.14881244.130952
352Nalm6_RUNX1_native-pos.pattern_3-subpattern_584Nalm6_RUNX1_nativepos0.19271250.261905
353Nalm6_RUNX1_native-pos.pattern_3-subpattern_684Nalm6_RUNX1_nativepos0.18122546.845238
354Nalm6_RUNX1_native-pos.pattern_3-subpattern_718Nalm6_RUNX1_nativepos0.19259938.500000
355Nalm6_RUNX1_native-pos.pattern_3-subpattern_82Nalm6_RUNX1_nativepos0.12204914.500000
356Nalm6_RUNX1_native-pos.pattern_4-subpattern_041Nalm6_RUNX1_nativepos0.09714353.756098
357Nalm6_RUNX1_native-neg.pattern_0-subpattern_0247Nalm6_RUNX1_nativeneg-0.13731538.518219
358Nalm6_RUNX1_native-neg.pattern_0-subpattern_1237Nalm6_RUNX1_nativeneg-0.11744142.801688
359Nalm6_RUNX1_native-neg.pattern_0-subpattern_1022Nalm6_RUNX1_nativeneg-0.13500853.409091
360Nalm6_RUNX1_native-neg.pattern_0-subpattern_1117Nalm6_RUNX1_nativeneg-0.14681755.529412
361Nalm6_RUNX1_native-neg.pattern_0-subpattern_1212Nalm6_RUNX1_nativeneg-0.15626847.083333
362Nalm6_RUNX1_native-neg.pattern_0-subpattern_137Nalm6_RUNX1_nativeneg-0.17823349.285714
363Nalm6_RUNX1_native-neg.pattern_0-subpattern_2158Nalm6_RUNX1_nativeneg-0.13957541.696203
364Nalm6_RUNX1_native-neg.pattern_0-subpattern_3132Nalm6_RUNX1_nativeneg-0.15552140.075758
365Nalm6_RUNX1_native-neg.pattern_0-subpattern_4128Nalm6_RUNX1_nativeneg-0.16866437.796875
366Nalm6_RUNX1_native-neg.pattern_0-subpattern_587Nalm6_RUNX1_nativeneg-0.16599738.931034
367Nalm6_RUNX1_native-neg.pattern_0-subpattern_661Nalm6_RUNX1_nativeneg-0.16330240.836066
368Nalm6_RUNX1_native-neg.pattern_0-subpattern_747Nalm6_RUNX1_nativeneg-0.15423546.489362
369Nalm6_RUNX1_native-neg.pattern_0-subpattern_830Nalm6_RUNX1_nativeneg-0.14361638.666667
370Nalm6_RUNX1_native-neg.pattern_0-subpattern_929Nalm6_RUNX1_nativeneg-0.18372236.034483
371Nalm6_RUNX1_native-neg.pattern_1-subpattern_024Nalm6_RUNX1_nativeneg-0.19323437.291667
372Nalm6_RUNX1_native-neg.pattern_1-subpattern_117Nalm6_RUNX1_nativeneg-0.14405233.705882
373Nalm6_RUNX1_native-neg.pattern_1-subpattern_211Nalm6_RUNX1_nativeneg-0.18670323.909091
374Nalm6_RUNX1_native-neg.pattern_2-subpattern_040Nalm6_RUNX1_nativeneg0.00409237.275000
\n", "

Images

No images available

" ], "text/plain": [ "" ] }, "execution_count": 4, "metadata": {}, "output_type": "execute_result" } ], "source": [ "modisco_dict = dict()\n", "for model in fusion_er_models:\n", " modisco_dict[model] = f'/users/shouvikm/BPNet/modisco/{model}/counts/counts_modisco_results.h5'\n", "for model in native_runx1_models:\n", " modisco_dict[model] = f'/users/shouvikm/BPNet/fusion_deconvolution_V3/modisco/{model}/counts/counts_modisco_results.h5'\n", " \n", "mc = MotifCompendium.build_from_modisco(modisco_dict, load_subpatterns=True)\n", "mc" ] }, { "cell_type": "code", "execution_count": null, "id": "8ed261f5-55bd-4d9d-ab09-1ad92e8e3797", "metadata": { "ExecuteTime": { "end_time": "2026-04-15T15:22:06.642242Z", "start_time": "2026-04-15T15:21:56.348138Z" }, "execution": { "iopub.execute_input": "2025-11-24T21:53:10.910907Z", "iopub.status.busy": "2025-11-24T21:53:10.910256Z", "iopub.status.idle": "2025-11-24T21:53:18.891334Z", "shell.execute_reply": "2025-11-24T21:53:18.888746Z", "shell.execute_reply.started": "2025-11-24T21:53:10.910843Z" } }, "outputs": [], "source": [ "mc.motif_collection_html(\"outputs/fusion_deconvolution_motif_collection.html\", 'model')" ] }, { "cell_type": "code", "execution_count": null, "id": "8553645f-eab7-4db8-be01-3af5cf4220a1", "metadata": { "ExecuteTime": { "end_time": "2026-04-15T15:22:09.254244Z", "start_time": "2026-04-15T15:22:06.647674Z" }, "execution": { "iopub.execute_input": "2025-11-24T21:53:53.627169Z", "iopub.status.busy": "2025-11-24T21:53:53.626524Z", "iopub.status.idle": "2025-11-24T21:53:56.404577Z", "shell.execute_reply": "2025-11-24T21:53:56.402135Z", "shell.execute_reply.started": "2025-11-24T21:53:53.627113Z" } }, "outputs": [], "source": [ "utils_analysis.plot_similarity_distribution(\n", " mc, \"outputs/fusion_deconvolution_similarity_distribution.html\"\n", ")" ] }, { "cell_type": "code", "execution_count": null, "id": "070fdc4c-b13d-40ce-a0ba-b89df45972cd", "metadata": { "ExecuteTime": { "end_time": "2026-04-15T15:22:09.313651Z", "start_time": "2026-04-15T15:22:09.257065Z" }, "execution": { "iopub.execute_input": "2025-11-24T21:56:10.876497Z", "iopub.status.busy": "2025-11-24T21:56:10.875819Z", "iopub.status.idle": "2025-11-24T21:56:11.073334Z", "shell.execute_reply": "2025-11-24T21:56:11.071403Z", "shell.execute_reply.started": "2025-11-24T21:56:10.876437Z" }, "scrolled": true }, "outputs": [], "source": [ "mc.cluster(similarity_threshold=0.95)\n", "mc" ] }, { "cell_type": "code", "execution_count": null, "id": "7bc2cd35-1f0d-4474-9bca-aa049ec6ce2a", "metadata": { "ExecuteTime": { "end_time": "2026-04-15T15:22:23.763001Z", "start_time": "2026-04-15T15:22:09.316275Z" }, "execution": { "iopub.execute_input": "2025-11-24T21:57:42.608278Z", "iopub.status.busy": "2025-11-24T21:57:42.607600Z", "iopub.status.idle": "2025-11-24T21:57:54.165091Z", "shell.execute_reply": "2025-11-24T21:57:54.162566Z", "shell.execute_reply.started": "2025-11-24T21:57:42.608222Z" } }, "outputs": [], "source": [ "mc.motif_collection_html(\"outputs/fusion_deconvolution_motif_clustered_collection.html\", \"cluster\")" ] }, { "cell_type": "code", "execution_count": null, "id": "147024ab-a935-47e0-a8a0-f29442b24111", "metadata": { "ExecuteTime": { "end_time": "2026-04-15T15:22:24.062658Z", "start_time": "2026-04-15T15:22:23.768359Z" }, "execution": { "iopub.execute_input": "2025-11-24T22:33:40.667488Z", "iopub.status.busy": "2025-11-24T22:33:40.666808Z", "iopub.status.idle": "2025-11-24T22:33:40.910737Z", "shell.execute_reply": "2025-11-24T22:33:40.909271Z", "shell.execute_reply.started": "2025-11-24T22:33:40.667430Z" }, "scrolled": true }, "outputs": [], "source": [ "mc_avg = mc.cluster_averages(\"cluster\", aggregations=[(\"name\", \"count\", \"num_constituents\"),\n", " (\"model\", \"concat_counted\", \"motifs_per_model\"),\n", " (\"num_seqlets\", \"sum\", \"total_seqlets\")])\n", "mc_avg" ] }, { "cell_type": "code", "execution_count": null, "id": "7c2838f5-aa08-424b-9f3e-7c423cd92569", "metadata": { "ExecuteTime": { "end_time": "2026-04-15T15:22:31.365459Z", "start_time": "2026-04-15T15:22:24.066165Z" }, "execution": { "iopub.execute_input": "2025-11-24T22:33:45.381409Z", "iopub.status.busy": "2025-11-24T22:33:45.380734Z", "iopub.status.idle": "2025-11-24T22:33:55.395713Z", "shell.execute_reply": "2025-11-24T22:33:55.393742Z", "shell.execute_reply.started": "2025-11-24T22:33:45.381351Z" } }, "outputs": [], "source": [ "mc_avg.summary_table_html(\"outputs/fusion_deconvolution_cluster_summary_table.html\")" ] }, { "cell_type": "code", "execution_count": 4, "id": "78f6cf78", "metadata": {}, "outputs": [ { "ename": "ImportError", "evalue": "Missing optional dependency 'lxml'. Use pip or conda to install lxml.", "output_type": "error", "traceback": [ "\u001b[0;31m---------------------------------------------------------------------------\u001b[0m", "\u001b[0;31mModuleNotFoundError\u001b[0m Traceback (most recent call last)", "File \u001b[0;32m/oak/stanford/groups/akundaje/shouvikm/miniconda3/envs/motifcompendium-gpu/lib/python3.10/site-packages/pandas/compat/_optional.py:135\u001b[0m, in \u001b[0;36mimport_optional_dependency\u001b[0;34m(name, extra, errors, min_version)\u001b[0m\n\u001b[1;32m 134\u001b[0m \u001b[38;5;28;01mtry\u001b[39;00m:\n\u001b[0;32m--> 135\u001b[0m module \u001b[38;5;241m=\u001b[39m \u001b[43mimportlib\u001b[49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43mimport_module\u001b[49m\u001b[43m(\u001b[49m\u001b[43mname\u001b[49m\u001b[43m)\u001b[49m\n\u001b[1;32m 136\u001b[0m \u001b[38;5;28;01mexcept\u001b[39;00m \u001b[38;5;167;01mImportError\u001b[39;00m:\n", "File \u001b[0;32m/oak/stanford/groups/akundaje/shouvikm/miniconda3/envs/motifcompendium-gpu/lib/python3.10/importlib/__init__.py:126\u001b[0m, in \u001b[0;36mimport_module\u001b[0;34m(name, package)\u001b[0m\n\u001b[1;32m 125\u001b[0m level \u001b[38;5;241m+\u001b[39m\u001b[38;5;241m=\u001b[39m \u001b[38;5;241m1\u001b[39m\n\u001b[0;32m--> 126\u001b[0m \u001b[38;5;28;01mreturn\u001b[39;00m \u001b[43m_bootstrap\u001b[49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43m_gcd_import\u001b[49m\u001b[43m(\u001b[49m\u001b[43mname\u001b[49m\u001b[43m[\u001b[49m\u001b[43mlevel\u001b[49m\u001b[43m:\u001b[49m\u001b[43m]\u001b[49m\u001b[43m,\u001b[49m\u001b[43m \u001b[49m\u001b[43mpackage\u001b[49m\u001b[43m,\u001b[49m\u001b[43m \u001b[49m\u001b[43mlevel\u001b[49m\u001b[43m)\u001b[49m\n", "File \u001b[0;32m:1050\u001b[0m, in \u001b[0;36m_gcd_import\u001b[0;34m(name, package, level)\u001b[0m\n", "File \u001b[0;32m:1027\u001b[0m, in \u001b[0;36m_find_and_load\u001b[0;34m(name, import_)\u001b[0m\n", "File \u001b[0;32m:992\u001b[0m, in \u001b[0;36m_find_and_load_unlocked\u001b[0;34m(name, import_)\u001b[0m\n", "File \u001b[0;32m:241\u001b[0m, in \u001b[0;36m_call_with_frames_removed\u001b[0;34m(f, *args, **kwds)\u001b[0m\n", "File \u001b[0;32m:1050\u001b[0m, in \u001b[0;36m_gcd_import\u001b[0;34m(name, package, level)\u001b[0m\n", "File \u001b[0;32m:1027\u001b[0m, in \u001b[0;36m_find_and_load\u001b[0;34m(name, import_)\u001b[0m\n", "File \u001b[0;32m:1004\u001b[0m, in \u001b[0;36m_find_and_load_unlocked\u001b[0;34m(name, import_)\u001b[0m\n", "\u001b[0;31mModuleNotFoundError\u001b[0m: No module named 'lxml'", "\nDuring handling of the above exception, another exception occurred:\n", "\u001b[0;31mImportError\u001b[0m Traceback (most recent call last)", "Cell \u001b[0;32mIn[4], line 1\u001b[0m\n\u001b[0;32m----> 1\u001b[0m summary_df \u001b[38;5;241m=\u001b[39m \u001b[43mpd\u001b[49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43mread_html\u001b[49m\u001b[43m(\u001b[49m\u001b[38;5;124;43m\"\u001b[39;49m\u001b[38;5;124;43moutputs/fusion_deconvolution_cluster_summary_table.html\u001b[39;49m\u001b[38;5;124;43m\"\u001b[39;49m\u001b[43m)\u001b[49m[\u001b[38;5;241m0\u001b[39m]\n\u001b[1;32m 2\u001b[0m summary_df\n", "File \u001b[0;32m/oak/stanford/groups/akundaje/shouvikm/miniconda3/envs/motifcompendium-gpu/lib/python3.10/site-packages/pandas/io/html.py:1240\u001b[0m, in \u001b[0;36mread_html\u001b[0;34m(io, match, flavor, header, index_col, skiprows, attrs, parse_dates, thousands, encoding, decimal, converters, na_values, keep_default_na, displayed_only, extract_links, dtype_backend, storage_options)\u001b[0m\n\u001b[1;32m 1224\u001b[0m \u001b[38;5;28;01mif\u001b[39;00m \u001b[38;5;28misinstance\u001b[39m(io, \u001b[38;5;28mstr\u001b[39m) \u001b[38;5;129;01mand\u001b[39;00m \u001b[38;5;129;01mnot\u001b[39;00m \u001b[38;5;28many\u001b[39m(\n\u001b[1;32m 1225\u001b[0m [\n\u001b[1;32m 1226\u001b[0m is_file_like(io),\n\u001b[0;32m (...)\u001b[0m\n\u001b[1;32m 1230\u001b[0m ]\n\u001b[1;32m 1231\u001b[0m ):\n\u001b[1;32m 1232\u001b[0m warnings\u001b[38;5;241m.\u001b[39mwarn(\n\u001b[1;32m 1233\u001b[0m \u001b[38;5;124m\"\u001b[39m\u001b[38;5;124mPassing literal html to \u001b[39m\u001b[38;5;124m'\u001b[39m\u001b[38;5;124mread_html\u001b[39m\u001b[38;5;124m'\u001b[39m\u001b[38;5;124m is deprecated and \u001b[39m\u001b[38;5;124m\"\u001b[39m\n\u001b[1;32m 1234\u001b[0m \u001b[38;5;124m\"\u001b[39m\u001b[38;5;124mwill be removed in a future version. To read from a \u001b[39m\u001b[38;5;124m\"\u001b[39m\n\u001b[0;32m (...)\u001b[0m\n\u001b[1;32m 1237\u001b[0m stacklevel\u001b[38;5;241m=\u001b[39mfind_stack_level(),\n\u001b[1;32m 1238\u001b[0m )\n\u001b[0;32m-> 1240\u001b[0m \u001b[38;5;28;01mreturn\u001b[39;00m \u001b[43m_parse\u001b[49m\u001b[43m(\u001b[49m\n\u001b[1;32m 1241\u001b[0m \u001b[43m \u001b[49m\u001b[43mflavor\u001b[49m\u001b[38;5;241;43m=\u001b[39;49m\u001b[43mflavor\u001b[49m\u001b[43m,\u001b[49m\n\u001b[1;32m 1242\u001b[0m \u001b[43m \u001b[49m\u001b[43mio\u001b[49m\u001b[38;5;241;43m=\u001b[39;49m\u001b[43mio\u001b[49m\u001b[43m,\u001b[49m\n\u001b[1;32m 1243\u001b[0m \u001b[43m \u001b[49m\u001b[43mmatch\u001b[49m\u001b[38;5;241;43m=\u001b[39;49m\u001b[43mmatch\u001b[49m\u001b[43m,\u001b[49m\n\u001b[1;32m 1244\u001b[0m \u001b[43m \u001b[49m\u001b[43mheader\u001b[49m\u001b[38;5;241;43m=\u001b[39;49m\u001b[43mheader\u001b[49m\u001b[43m,\u001b[49m\n\u001b[1;32m 1245\u001b[0m \u001b[43m \u001b[49m\u001b[43mindex_col\u001b[49m\u001b[38;5;241;43m=\u001b[39;49m\u001b[43mindex_col\u001b[49m\u001b[43m,\u001b[49m\n\u001b[1;32m 1246\u001b[0m \u001b[43m \u001b[49m\u001b[43mskiprows\u001b[49m\u001b[38;5;241;43m=\u001b[39;49m\u001b[43mskiprows\u001b[49m\u001b[43m,\u001b[49m\n\u001b[1;32m 1247\u001b[0m \u001b[43m \u001b[49m\u001b[43mparse_dates\u001b[49m\u001b[38;5;241;43m=\u001b[39;49m\u001b[43mparse_dates\u001b[49m\u001b[43m,\u001b[49m\n\u001b[1;32m 1248\u001b[0m \u001b[43m \u001b[49m\u001b[43mthousands\u001b[49m\u001b[38;5;241;43m=\u001b[39;49m\u001b[43mthousands\u001b[49m\u001b[43m,\u001b[49m\n\u001b[1;32m 1249\u001b[0m \u001b[43m \u001b[49m\u001b[43mattrs\u001b[49m\u001b[38;5;241;43m=\u001b[39;49m\u001b[43mattrs\u001b[49m\u001b[43m,\u001b[49m\n\u001b[1;32m 1250\u001b[0m \u001b[43m \u001b[49m\u001b[43mencoding\u001b[49m\u001b[38;5;241;43m=\u001b[39;49m\u001b[43mencoding\u001b[49m\u001b[43m,\u001b[49m\n\u001b[1;32m 1251\u001b[0m \u001b[43m \u001b[49m\u001b[43mdecimal\u001b[49m\u001b[38;5;241;43m=\u001b[39;49m\u001b[43mdecimal\u001b[49m\u001b[43m,\u001b[49m\n\u001b[1;32m 1252\u001b[0m \u001b[43m \u001b[49m\u001b[43mconverters\u001b[49m\u001b[38;5;241;43m=\u001b[39;49m\u001b[43mconverters\u001b[49m\u001b[43m,\u001b[49m\n\u001b[1;32m 1253\u001b[0m \u001b[43m \u001b[49m\u001b[43mna_values\u001b[49m\u001b[38;5;241;43m=\u001b[39;49m\u001b[43mna_values\u001b[49m\u001b[43m,\u001b[49m\n\u001b[1;32m 1254\u001b[0m \u001b[43m \u001b[49m\u001b[43mkeep_default_na\u001b[49m\u001b[38;5;241;43m=\u001b[39;49m\u001b[43mkeep_default_na\u001b[49m\u001b[43m,\u001b[49m\n\u001b[1;32m 1255\u001b[0m \u001b[43m \u001b[49m\u001b[43mdisplayed_only\u001b[49m\u001b[38;5;241;43m=\u001b[39;49m\u001b[43mdisplayed_only\u001b[49m\u001b[43m,\u001b[49m\n\u001b[1;32m 1256\u001b[0m \u001b[43m \u001b[49m\u001b[43mextract_links\u001b[49m\u001b[38;5;241;43m=\u001b[39;49m\u001b[43mextract_links\u001b[49m\u001b[43m,\u001b[49m\n\u001b[1;32m 1257\u001b[0m \u001b[43m \u001b[49m\u001b[43mdtype_backend\u001b[49m\u001b[38;5;241;43m=\u001b[39;49m\u001b[43mdtype_backend\u001b[49m\u001b[43m,\u001b[49m\n\u001b[1;32m 1258\u001b[0m \u001b[43m \u001b[49m\u001b[43mstorage_options\u001b[49m\u001b[38;5;241;43m=\u001b[39;49m\u001b[43mstorage_options\u001b[49m\u001b[43m,\u001b[49m\n\u001b[1;32m 1259\u001b[0m \u001b[43m\u001b[49m\u001b[43m)\u001b[49m\n", "File \u001b[0;32m/oak/stanford/groups/akundaje/shouvikm/miniconda3/envs/motifcompendium-gpu/lib/python3.10/site-packages/pandas/io/html.py:971\u001b[0m, in \u001b[0;36m_parse\u001b[0;34m(flavor, io, match, attrs, encoding, displayed_only, extract_links, storage_options, **kwargs)\u001b[0m\n\u001b[1;32m 969\u001b[0m retained \u001b[38;5;241m=\u001b[39m \u001b[38;5;28;01mNone\u001b[39;00m\n\u001b[1;32m 970\u001b[0m \u001b[38;5;28;01mfor\u001b[39;00m flav \u001b[38;5;129;01min\u001b[39;00m flavor:\n\u001b[0;32m--> 971\u001b[0m parser \u001b[38;5;241m=\u001b[39m \u001b[43m_parser_dispatch\u001b[49m\u001b[43m(\u001b[49m\u001b[43mflav\u001b[49m\u001b[43m)\u001b[49m\n\u001b[1;32m 972\u001b[0m p \u001b[38;5;241m=\u001b[39m parser(\n\u001b[1;32m 973\u001b[0m io,\n\u001b[1;32m 974\u001b[0m compiled_match,\n\u001b[0;32m (...)\u001b[0m\n\u001b[1;32m 979\u001b[0m storage_options,\n\u001b[1;32m 980\u001b[0m )\n\u001b[1;32m 982\u001b[0m \u001b[38;5;28;01mtry\u001b[39;00m:\n", "File \u001b[0;32m/oak/stanford/groups/akundaje/shouvikm/miniconda3/envs/motifcompendium-gpu/lib/python3.10/site-packages/pandas/io/html.py:918\u001b[0m, in \u001b[0;36m_parser_dispatch\u001b[0;34m(flavor)\u001b[0m\n\u001b[1;32m 916\u001b[0m import_optional_dependency(\u001b[38;5;124m\"\u001b[39m\u001b[38;5;124mbs4\u001b[39m\u001b[38;5;124m\"\u001b[39m)\n\u001b[1;32m 917\u001b[0m \u001b[38;5;28;01melse\u001b[39;00m:\n\u001b[0;32m--> 918\u001b[0m \u001b[43mimport_optional_dependency\u001b[49m\u001b[43m(\u001b[49m\u001b[38;5;124;43m\"\u001b[39;49m\u001b[38;5;124;43mlxml.etree\u001b[39;49m\u001b[38;5;124;43m\"\u001b[39;49m\u001b[43m)\u001b[49m\n\u001b[1;32m 919\u001b[0m \u001b[38;5;28;01mreturn\u001b[39;00m _valid_parsers[flavor]\n", "File \u001b[0;32m/oak/stanford/groups/akundaje/shouvikm/miniconda3/envs/motifcompendium-gpu/lib/python3.10/site-packages/pandas/compat/_optional.py:138\u001b[0m, in \u001b[0;36mimport_optional_dependency\u001b[0;34m(name, extra, errors, min_version)\u001b[0m\n\u001b[1;32m 136\u001b[0m \u001b[38;5;28;01mexcept\u001b[39;00m \u001b[38;5;167;01mImportError\u001b[39;00m:\n\u001b[1;32m 137\u001b[0m \u001b[38;5;28;01mif\u001b[39;00m errors \u001b[38;5;241m==\u001b[39m \u001b[38;5;124m\"\u001b[39m\u001b[38;5;124mraise\u001b[39m\u001b[38;5;124m\"\u001b[39m:\n\u001b[0;32m--> 138\u001b[0m \u001b[38;5;28;01mraise\u001b[39;00m \u001b[38;5;167;01mImportError\u001b[39;00m(msg)\n\u001b[1;32m 139\u001b[0m \u001b[38;5;28;01mreturn\u001b[39;00m \u001b[38;5;28;01mNone\u001b[39;00m\n\u001b[1;32m 141\u001b[0m \u001b[38;5;66;03m# Handle submodules: if we have submodule, grab parent module from sys.modules\u001b[39;00m\n", "\u001b[0;31mImportError\u001b[0m: Missing optional dependency 'lxml'. Use pip or conda to install lxml." ] } ], "source": [ "summary_df = pd.read_html(\"outputs/fusion_deconvolution_cluster_summary_table.html\")[0]\n", "summary_df" ] }, { "cell_type": "code", "execution_count": 9, "id": "9cb65c6e", "metadata": {}, "outputs": [ { "ename": "ImportError", "evalue": "Missing optional dependency 'lxml'. Use pip or conda to install lxml.", "output_type": "error", "traceback": [ "\u001b[0;31m---------------------------------------------------------------------------\u001b[0m", "\u001b[0;31mModuleNotFoundError\u001b[0m Traceback (most recent call last)", "File \u001b[0;32m/oak/stanford/groups/akundaje/shouvikm/miniconda3/envs/motifcompendium-gpu/lib/python3.10/site-packages/pandas/compat/_optional.py:135\u001b[0m, in \u001b[0;36mimport_optional_dependency\u001b[0;34m(name, extra, errors, min_version)\u001b[0m\n\u001b[1;32m 134\u001b[0m \u001b[38;5;28;01mtry\u001b[39;00m:\n\u001b[0;32m--> 135\u001b[0m module \u001b[38;5;241m=\u001b[39m \u001b[43mimportlib\u001b[49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43mimport_module\u001b[49m\u001b[43m(\u001b[49m\u001b[43mname\u001b[49m\u001b[43m)\u001b[49m\n\u001b[1;32m 136\u001b[0m \u001b[38;5;28;01mexcept\u001b[39;00m \u001b[38;5;167;01mImportError\u001b[39;00m:\n", "File \u001b[0;32m/oak/stanford/groups/akundaje/shouvikm/miniconda3/envs/motifcompendium-gpu/lib/python3.10/importlib/__init__.py:126\u001b[0m, in \u001b[0;36mimport_module\u001b[0;34m(name, package)\u001b[0m\n\u001b[1;32m 125\u001b[0m level \u001b[38;5;241m+\u001b[39m\u001b[38;5;241m=\u001b[39m \u001b[38;5;241m1\u001b[39m\n\u001b[0;32m--> 126\u001b[0m \u001b[38;5;28;01mreturn\u001b[39;00m \u001b[43m_bootstrap\u001b[49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43m_gcd_import\u001b[49m\u001b[43m(\u001b[49m\u001b[43mname\u001b[49m\u001b[43m[\u001b[49m\u001b[43mlevel\u001b[49m\u001b[43m:\u001b[49m\u001b[43m]\u001b[49m\u001b[43m,\u001b[49m\u001b[43m \u001b[49m\u001b[43mpackage\u001b[49m\u001b[43m,\u001b[49m\u001b[43m \u001b[49m\u001b[43mlevel\u001b[49m\u001b[43m)\u001b[49m\n", "File \u001b[0;32m:1050\u001b[0m, in \u001b[0;36m_gcd_import\u001b[0;34m(name, package, level)\u001b[0m\n", "File \u001b[0;32m:1027\u001b[0m, in \u001b[0;36m_find_and_load\u001b[0;34m(name, import_)\u001b[0m\n", "File \u001b[0;32m:992\u001b[0m, in \u001b[0;36m_find_and_load_unlocked\u001b[0;34m(name, import_)\u001b[0m\n", "File \u001b[0;32m:241\u001b[0m, in \u001b[0;36m_call_with_frames_removed\u001b[0;34m(f, *args, **kwds)\u001b[0m\n", "File \u001b[0;32m:1050\u001b[0m, in \u001b[0;36m_gcd_import\u001b[0;34m(name, package, level)\u001b[0m\n", "File \u001b[0;32m:1027\u001b[0m, in \u001b[0;36m_find_and_load\u001b[0;34m(name, import_)\u001b[0m\n", "File \u001b[0;32m:1004\u001b[0m, in \u001b[0;36m_find_and_load_unlocked\u001b[0;34m(name, import_)\u001b[0m\n", "\u001b[0;31mModuleNotFoundError\u001b[0m: No module named 'lxml'", "\nDuring handling of the above exception, another exception occurred:\n", "\u001b[0;31mImportError\u001b[0m Traceback (most recent call last)", "Cell \u001b[0;32mIn[9], line 4\u001b[0m\n\u001b[1;32m 1\u001b[0m \u001b[38;5;28;01mimport\u001b[39;00m\u001b[38;5;250m \u001b[39m\u001b[38;5;21;01mpandas\u001b[39;00m\u001b[38;5;250m \u001b[39m\u001b[38;5;28;01mas\u001b[39;00m\u001b[38;5;250m \u001b[39m\u001b[38;5;21;01mpd\u001b[39;00m\n\u001b[1;32m 3\u001b[0m \u001b[38;5;66;03m# Load the summary table HTML\u001b[39;00m\n\u001b[0;32m----> 4\u001b[0m summary_df \u001b[38;5;241m=\u001b[39m \u001b[43mpd\u001b[49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43mread_html\u001b[49m\u001b[43m(\u001b[49m\u001b[38;5;124;43m\"\u001b[39;49m\u001b[38;5;124;43moutputs/fusion_deconvolution_cluster_summary_table.html\u001b[39;49m\u001b[38;5;124;43m\"\u001b[39;49m\u001b[43m)\u001b[49m[\u001b[38;5;241m0\u001b[39m]\n\u001b[1;32m 6\u001b[0m \u001b[38;5;66;03m# # Sort by 'total_seqlets' in descending order and get the top 25 rows\u001b[39;00m\n\u001b[1;32m 7\u001b[0m \u001b[38;5;66;03m# top25_df = summary_df.sort_values(by=\"total_seqlets\", ascending=False).head(25)\u001b[39;00m\n\u001b[1;32m 8\u001b[0m \n\u001b[1;32m 9\u001b[0m \u001b[38;5;66;03m# # Display the result in the notebook\u001b[39;00m\n\u001b[1;32m 10\u001b[0m \u001b[38;5;66;03m# top25_df\u001b[39;00m\n", "File \u001b[0;32m/oak/stanford/groups/akundaje/shouvikm/miniconda3/envs/motifcompendium-gpu/lib/python3.10/site-packages/pandas/io/html.py:1240\u001b[0m, in \u001b[0;36mread_html\u001b[0;34m(io, match, flavor, header, index_col, skiprows, attrs, parse_dates, thousands, encoding, decimal, converters, na_values, keep_default_na, displayed_only, extract_links, dtype_backend, storage_options)\u001b[0m\n\u001b[1;32m 1224\u001b[0m \u001b[38;5;28;01mif\u001b[39;00m \u001b[38;5;28misinstance\u001b[39m(io, \u001b[38;5;28mstr\u001b[39m) \u001b[38;5;129;01mand\u001b[39;00m \u001b[38;5;129;01mnot\u001b[39;00m \u001b[38;5;28many\u001b[39m(\n\u001b[1;32m 1225\u001b[0m [\n\u001b[1;32m 1226\u001b[0m is_file_like(io),\n\u001b[0;32m (...)\u001b[0m\n\u001b[1;32m 1230\u001b[0m ]\n\u001b[1;32m 1231\u001b[0m ):\n\u001b[1;32m 1232\u001b[0m warnings\u001b[38;5;241m.\u001b[39mwarn(\n\u001b[1;32m 1233\u001b[0m \u001b[38;5;124m\"\u001b[39m\u001b[38;5;124mPassing literal html to \u001b[39m\u001b[38;5;124m'\u001b[39m\u001b[38;5;124mread_html\u001b[39m\u001b[38;5;124m'\u001b[39m\u001b[38;5;124m is deprecated and \u001b[39m\u001b[38;5;124m\"\u001b[39m\n\u001b[1;32m 1234\u001b[0m \u001b[38;5;124m\"\u001b[39m\u001b[38;5;124mwill be removed in a future version. To read from a \u001b[39m\u001b[38;5;124m\"\u001b[39m\n\u001b[0;32m (...)\u001b[0m\n\u001b[1;32m 1237\u001b[0m stacklevel\u001b[38;5;241m=\u001b[39mfind_stack_level(),\n\u001b[1;32m 1238\u001b[0m )\n\u001b[0;32m-> 1240\u001b[0m \u001b[38;5;28;01mreturn\u001b[39;00m \u001b[43m_parse\u001b[49m\u001b[43m(\u001b[49m\n\u001b[1;32m 1241\u001b[0m \u001b[43m \u001b[49m\u001b[43mflavor\u001b[49m\u001b[38;5;241;43m=\u001b[39;49m\u001b[43mflavor\u001b[49m\u001b[43m,\u001b[49m\n\u001b[1;32m 1242\u001b[0m \u001b[43m \u001b[49m\u001b[43mio\u001b[49m\u001b[38;5;241;43m=\u001b[39;49m\u001b[43mio\u001b[49m\u001b[43m,\u001b[49m\n\u001b[1;32m 1243\u001b[0m \u001b[43m \u001b[49m\u001b[43mmatch\u001b[49m\u001b[38;5;241;43m=\u001b[39;49m\u001b[43mmatch\u001b[49m\u001b[43m,\u001b[49m\n\u001b[1;32m 1244\u001b[0m \u001b[43m \u001b[49m\u001b[43mheader\u001b[49m\u001b[38;5;241;43m=\u001b[39;49m\u001b[43mheader\u001b[49m\u001b[43m,\u001b[49m\n\u001b[1;32m 1245\u001b[0m \u001b[43m \u001b[49m\u001b[43mindex_col\u001b[49m\u001b[38;5;241;43m=\u001b[39;49m\u001b[43mindex_col\u001b[49m\u001b[43m,\u001b[49m\n\u001b[1;32m 1246\u001b[0m \u001b[43m \u001b[49m\u001b[43mskiprows\u001b[49m\u001b[38;5;241;43m=\u001b[39;49m\u001b[43mskiprows\u001b[49m\u001b[43m,\u001b[49m\n\u001b[1;32m 1247\u001b[0m \u001b[43m \u001b[49m\u001b[43mparse_dates\u001b[49m\u001b[38;5;241;43m=\u001b[39;49m\u001b[43mparse_dates\u001b[49m\u001b[43m,\u001b[49m\n\u001b[1;32m 1248\u001b[0m \u001b[43m \u001b[49m\u001b[43mthousands\u001b[49m\u001b[38;5;241;43m=\u001b[39;49m\u001b[43mthousands\u001b[49m\u001b[43m,\u001b[49m\n\u001b[1;32m 1249\u001b[0m \u001b[43m \u001b[49m\u001b[43mattrs\u001b[49m\u001b[38;5;241;43m=\u001b[39;49m\u001b[43mattrs\u001b[49m\u001b[43m,\u001b[49m\n\u001b[1;32m 1250\u001b[0m \u001b[43m \u001b[49m\u001b[43mencoding\u001b[49m\u001b[38;5;241;43m=\u001b[39;49m\u001b[43mencoding\u001b[49m\u001b[43m,\u001b[49m\n\u001b[1;32m 1251\u001b[0m \u001b[43m \u001b[49m\u001b[43mdecimal\u001b[49m\u001b[38;5;241;43m=\u001b[39;49m\u001b[43mdecimal\u001b[49m\u001b[43m,\u001b[49m\n\u001b[1;32m 1252\u001b[0m \u001b[43m \u001b[49m\u001b[43mconverters\u001b[49m\u001b[38;5;241;43m=\u001b[39;49m\u001b[43mconverters\u001b[49m\u001b[43m,\u001b[49m\n\u001b[1;32m 1253\u001b[0m \u001b[43m \u001b[49m\u001b[43mna_values\u001b[49m\u001b[38;5;241;43m=\u001b[39;49m\u001b[43mna_values\u001b[49m\u001b[43m,\u001b[49m\n\u001b[1;32m 1254\u001b[0m \u001b[43m \u001b[49m\u001b[43mkeep_default_na\u001b[49m\u001b[38;5;241;43m=\u001b[39;49m\u001b[43mkeep_default_na\u001b[49m\u001b[43m,\u001b[49m\n\u001b[1;32m 1255\u001b[0m \u001b[43m \u001b[49m\u001b[43mdisplayed_only\u001b[49m\u001b[38;5;241;43m=\u001b[39;49m\u001b[43mdisplayed_only\u001b[49m\u001b[43m,\u001b[49m\n\u001b[1;32m 1256\u001b[0m \u001b[43m \u001b[49m\u001b[43mextract_links\u001b[49m\u001b[38;5;241;43m=\u001b[39;49m\u001b[43mextract_links\u001b[49m\u001b[43m,\u001b[49m\n\u001b[1;32m 1257\u001b[0m \u001b[43m \u001b[49m\u001b[43mdtype_backend\u001b[49m\u001b[38;5;241;43m=\u001b[39;49m\u001b[43mdtype_backend\u001b[49m\u001b[43m,\u001b[49m\n\u001b[1;32m 1258\u001b[0m \u001b[43m \u001b[49m\u001b[43mstorage_options\u001b[49m\u001b[38;5;241;43m=\u001b[39;49m\u001b[43mstorage_options\u001b[49m\u001b[43m,\u001b[49m\n\u001b[1;32m 1259\u001b[0m \u001b[43m\u001b[49m\u001b[43m)\u001b[49m\n", "File \u001b[0;32m/oak/stanford/groups/akundaje/shouvikm/miniconda3/envs/motifcompendium-gpu/lib/python3.10/site-packages/pandas/io/html.py:971\u001b[0m, in \u001b[0;36m_parse\u001b[0;34m(flavor, io, match, attrs, encoding, displayed_only, extract_links, storage_options, **kwargs)\u001b[0m\n\u001b[1;32m 969\u001b[0m retained \u001b[38;5;241m=\u001b[39m \u001b[38;5;28;01mNone\u001b[39;00m\n\u001b[1;32m 970\u001b[0m \u001b[38;5;28;01mfor\u001b[39;00m flav \u001b[38;5;129;01min\u001b[39;00m flavor:\n\u001b[0;32m--> 971\u001b[0m parser \u001b[38;5;241m=\u001b[39m \u001b[43m_parser_dispatch\u001b[49m\u001b[43m(\u001b[49m\u001b[43mflav\u001b[49m\u001b[43m)\u001b[49m\n\u001b[1;32m 972\u001b[0m p \u001b[38;5;241m=\u001b[39m parser(\n\u001b[1;32m 973\u001b[0m io,\n\u001b[1;32m 974\u001b[0m compiled_match,\n\u001b[0;32m (...)\u001b[0m\n\u001b[1;32m 979\u001b[0m storage_options,\n\u001b[1;32m 980\u001b[0m )\n\u001b[1;32m 982\u001b[0m \u001b[38;5;28;01mtry\u001b[39;00m:\n", "File \u001b[0;32m/oak/stanford/groups/akundaje/shouvikm/miniconda3/envs/motifcompendium-gpu/lib/python3.10/site-packages/pandas/io/html.py:918\u001b[0m, in \u001b[0;36m_parser_dispatch\u001b[0;34m(flavor)\u001b[0m\n\u001b[1;32m 916\u001b[0m import_optional_dependency(\u001b[38;5;124m\"\u001b[39m\u001b[38;5;124mbs4\u001b[39m\u001b[38;5;124m\"\u001b[39m)\n\u001b[1;32m 917\u001b[0m \u001b[38;5;28;01melse\u001b[39;00m:\n\u001b[0;32m--> 918\u001b[0m \u001b[43mimport_optional_dependency\u001b[49m\u001b[43m(\u001b[49m\u001b[38;5;124;43m\"\u001b[39;49m\u001b[38;5;124;43mlxml.etree\u001b[39;49m\u001b[38;5;124;43m\"\u001b[39;49m\u001b[43m)\u001b[49m\n\u001b[1;32m 919\u001b[0m \u001b[38;5;28;01mreturn\u001b[39;00m _valid_parsers[flavor]\n", "File \u001b[0;32m/oak/stanford/groups/akundaje/shouvikm/miniconda3/envs/motifcompendium-gpu/lib/python3.10/site-packages/pandas/compat/_optional.py:138\u001b[0m, in \u001b[0;36mimport_optional_dependency\u001b[0;34m(name, extra, errors, min_version)\u001b[0m\n\u001b[1;32m 136\u001b[0m \u001b[38;5;28;01mexcept\u001b[39;00m \u001b[38;5;167;01mImportError\u001b[39;00m:\n\u001b[1;32m 137\u001b[0m \u001b[38;5;28;01mif\u001b[39;00m errors \u001b[38;5;241m==\u001b[39m \u001b[38;5;124m\"\u001b[39m\u001b[38;5;124mraise\u001b[39m\u001b[38;5;124m\"\u001b[39m:\n\u001b[0;32m--> 138\u001b[0m \u001b[38;5;28;01mraise\u001b[39;00m \u001b[38;5;167;01mImportError\u001b[39;00m(msg)\n\u001b[1;32m 139\u001b[0m \u001b[38;5;28;01mreturn\u001b[39;00m \u001b[38;5;28;01mNone\u001b[39;00m\n\u001b[1;32m 141\u001b[0m \u001b[38;5;66;03m# Handle submodules: if we have submodule, grab parent module from sys.modules\u001b[39;00m\n", "\u001b[0;31mImportError\u001b[0m: Missing optional dependency 'lxml'. Use pip or conda to install lxml." ] } ], "source": [ "import pandas as pd\n", "\n", "# Load the summary table HTML\n", "\n", "\n", "# # Sort by 'total_seqlets' in descending order and get the top 25 rows\n", "# top25_df = summary_df.sort_values(by=\"total_seqlets\", ascending=False).head(25)\n", "\n", "# # Display the result in the notebook\n", "# top25_df" ] }, { "cell_type": "code", "execution_count": null, "id": "f49d5859", "metadata": { "ExecuteTime": { "end_time": "2026-04-15T15:30:00.596509Z", "start_time": "2026-04-15T15:30:00.575974Z" } }, "outputs": [], "source": [ "mc.metadata[mc.metadata['cluster'] == 11]" ] }, { "cell_type": "code", "execution_count": null, "id": "ca66dc24", "metadata": { "ExecuteTime": { "end_time": "2026-04-15T15:30:00.596509Z", "start_time": "2026-04-15T15:30:00.575974Z" } }, "outputs": [], "source": [ "mc.metadata[mc.metadata['cluster'] == 11]" ] }, { "cell_type": "code", "execution_count": null, "id": "b02ae9d0-0989-4f8f-8f33-423bbeed5818", "metadata": { "ExecuteTime": { "end_time": "2026-04-15T14:59:02.765558Z", "start_time": "2026-04-15T14:59:02.309792Z" }, "execution": { "iopub.execute_input": "2025-11-24T22:33:55.396989Z", "iopub.status.busy": "2025-11-24T22:33:55.396766Z", "iopub.status.idle": "2025-11-24T22:33:55.541875Z", "shell.execute_reply": "2025-11-24T22:33:55.539527Z", "shell.execute_reply.started": "2025-11-24T22:33:55.396967Z" } }, "outputs": [], "source": [ "mc_avg[\"annotation\"] = \"\"\n", "mc_avg.summary_table_html(\"outputs/fusion_deconvolution_editable_cluster_summary_table.html\", editable=True)" ] }, { "cell_type": "code", "execution_count": null, "id": "84fc0bca-315b-4eb4-b121-755191faac0d", "metadata": { "ExecuteTime": { "end_time": "2026-02-11T05:54:48.484605Z", "start_time": "2026-02-11T05:54:48.205558Z" }, "execution": { "iopub.execute_input": "2025-11-24T22:52:21.784027Z", "iopub.status.busy": "2025-11-24T22:52:21.783329Z", "iopub.status.idle": "2025-11-24T22:52:22.087817Z", "shell.execute_reply": "2025-11-24T22:52:22.086254Z", "shell.execute_reply.started": "2025-11-24T22:52:21.783969Z" }, "scrolled": true }, "outputs": [], "source": [ "mc_avg.update_from_summary_table(\"outputs/fusion_bias_correction_edited_cluster_summary_table.html\")\n", "mc_avg" ] }, { "cell_type": "code", "execution_count": null, "id": "0a629182-1e56-47bd-81b5-08a791376f58", "metadata": { "ExecuteTime": { "end_time": "2026-02-11T05:55:00.589145Z", "start_time": "2026-02-11T05:55:00.567679Z" }, "execution": { "iopub.execute_input": "2025-11-24T22:57:38.442057Z", "iopub.status.busy": "2025-11-24T22:57:38.441379Z", "iopub.status.idle": "2025-11-24T22:57:38.465019Z", "shell.execute_reply": "2025-11-24T22:57:38.463574Z", "shell.execute_reply.started": "2025-11-24T22:57:38.441999Z" } }, "outputs": [], "source": [ "mc_avg_edited = mc_avg[mc_avg.metadata['annotation'] != '']\n", "mc_avg_edited = mc_avg_edited.sort('total_seqlets', ascending=False)\n", "mc_avg_edited['cluster_annotation'] = mc_avg_edited['name'] + ' ' + mc_avg_edited['annotation']\n", "mc_avg_edited" ] }, { "cell_type": "code", "execution_count": null, "id": "cb172ac7-b81c-4c5b-be7f-86cebd455240", "metadata": { "ExecuteTime": { "end_time": "2026-02-11T05:55:51.087534Z", "start_time": "2026-02-11T05:55:50.977730Z" }, "execution": { "iopub.execute_input": "2025-11-25T00:13:05.421249Z", "iopub.status.busy": "2025-11-25T00:13:05.419606Z", "iopub.status.idle": "2025-11-25T00:13:05.467369Z", "shell.execute_reply": "2025-11-25T00:13:05.466056Z", "shell.execute_reply.started": "2025-11-25T00:13:05.421137Z" } }, "outputs": [], "source": [ "utils_analysis.export_compendium_modisco(mc_avg_edited, \"source_cluster\", \"outputs/fusion_motifs_compendium_modisco.h5\")" ] }, { "cell_type": "code", "execution_count": null, "id": "1675a1d1-e4d7-4c83-9807-e49320aa31bd", "metadata": { "ExecuteTime": { "end_time": "2025-12-31T08:06:06.081149Z", "start_time": "2025-12-31T08:06:01.264763Z" } }, "outputs": [], "source": [ "mc_avg_edited.save(\"outputs/motif_compendium.mc\")" ] }, { "cell_type": "code", "execution_count": null, "id": "5cdd563e", "metadata": { "ExecuteTime": { "end_time": "2025-12-31T08:06:06.498020Z", "start_time": "2025-12-31T08:06:06.084659Z" } }, "outputs": [], "source": [ "mc_avg_edited.metadata.to_csv(\"outputs/motif_compendium_metadata.csv\", index=False)" ] }, { "cell_type": "code", "execution_count": null, "id": "824cdf61", "metadata": { "ExecuteTime": { "end_time": "2025-12-31T08:06:27.847624Z", "start_time": "2025-12-31T08:06:14.242001Z" } }, "outputs": [], "source": [ "for i in range(mc_avg_edited.metadata.shape[0]):\n", " cluster = mc_avg_edited.metadata.iloc[i]['source_cluster']\n", " utils_plotting.plot_motif(mc_avg_edited.get_standard_motif_stack()[i], \n", " show=False, \n", " save_loc=f\"outputs/motif_logos/{cluster}.png\")" ] } ], "metadata": { "kernelspec": { "display_name": "motifcompendium-gpu", "language": "python", "name": "python3" }, "language_info": { "codemirror_mode": { "name": "ipython", "version": 3 }, "file_extension": ".py", "mimetype": "text/x-python", "name": "python", "nbconvert_exporter": "python", "pygments_lexer": "ipython3", "version": "3.10.19" } }, "nbformat": 4, "nbformat_minor": 5 }