Index of /kundaje/shouvikm/BPNet

[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory  -  
[DIR]data_exploration/2025-11-10 20:56 -  
[TXT]chip_data_exploration.sh2025-11-12 03:15 6.8K 
[TXT]bpnet_predict.sh2025-11-17 22:09 938  
[TXT]bpnet_contributions.sh2025-11-17 22:10 711  
[TXT]bpnet_training.sh2025-11-17 22:36 1.0K 
[TXT]run_bpnet_pipeline.sh2025-11-17 22:51 380  
[ ]evaluate_bpnet.ipynb2025-11-18 21:11 513K 
[DIR]utils/2025-11-19 01:34 -  
[TXT]run_modisco.sh2025-11-19 15:21 259  
[DIR]atac_overlap/2025-11-24 21:21 -  
[ ]chip_data_exploration.ipynb2025-12-01 21:19 267K 
[TXT]run_finemo.sh2025-12-04 04:17 157  
[ ]affinity_distillation.ipynb2025-12-10 02:05 826K 
[DIR]data/2025-12-30 03:40 -  
[TXT]generate_bpnet_models_counts_loss_weights.sh2025-12-30 04:25 230  
[TXT]run_bpnet_preprocessing_pipeline.sh2026-01-05 07:24 4.8K 
[ ]evaluate_bpnet_V2.ipynb2026-01-05 23:34 384K 
[ ]affinity_distillation_V3.ipynb2026-01-06 23:35 636K 
[ ]chip_data_exploration_v2.ipynb2026-02-04 23:56 623K 
[DIR]finemo/2026-02-11 06:32 -  
[TXT]bpnet_finemo.sh2026-02-11 06:34 1.1K 
[ ]analyze_finemo_results.ipynb2026-02-11 07:29 648K 
[DIR]bpnet/2026-03-16 20:57 -  
[DIR]fusion_deconvolution_V1/2026-03-23 23:03 -  
[DIR]fusion_deconvolution_V2/2026-03-30 22:57 -  
[ ]chip_data_exploration_v3.ipynb2026-04-20 20:49 1.4M 
[ ]chip_data_exploration_v4.ipynb2026-04-27 22:24 142K 
[TXT]bpnet_pipeline.sh2026-05-11 09:23 503  
[TXT]average_bpnet_outputs_across_folds.sh2026-05-11 19:23 2.2K 
[TXT]bpnet_modisco.sh2026-05-11 19:34 1.0K 
[ ]evaluate_bpnet_V3.ipynb2026-05-11 23:23 22K 
[DIR]sherlock_logs/2026-05-26 16:43 -  
[TXT]bpnet_preprocessing_pipeline.sh2026-05-26 16:59 2.5K 
[ ]outliers.log2026-05-26 17:46 117K 
[DIR]models/2026-05-26 17:53 -  
[DIR]predictions/2026-05-26 18:04 -  
[DIR]contributions/2026-05-26 18:06 -  
[DIR]viz/2026-05-26 18:25 -  
[DIR]modisco/2026-05-26 18:37 -  
[ ]evaluate_bpnet_V4.ipynb2026-05-26 20:52 22K 
[ ]affinity_distillation_V2.ipynb2026-05-30 20:24 3.5M 
[DIR]fusion_deconvolution_V3/2026-05-30 20:33 -  
[DIR]MotifCompendium/2026-05-30 20:38 -  
[DIR]affinity_distillation/2026-05-31 00:39 -  
[ ]affinity_distillation_RUNX1_RUNX1T1.ipynb2026-06-01 23:57 5.7M 
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