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| Name | Last modified | Size | Description |
|---|---|---|---|---|
| Parent Directory | - | ||
| MotifCompendium/ | 2026-02-11 06:34 | - | |
| affinity_distillation.ipynb | 2025-12-10 02:05 | 826K | |
| affinity_distillation/ | 2026-01-05 23:11 | - | |
| affinity_distillation_V2.ipynb | 2026-01-15 22:19 | 3.5M | |
| affinity_distillation_V3.ipynb | 2026-01-06 23:35 | 636K | |
| analyze_finemo_results.ipynb | 2026-02-11 07:29 | 648K | |
| atac_overlap/ | 2025-11-24 21:21 | - | |
| average_bpnet_outputs_across_folds.sh | 2025-11-19 01:53 | 2.4K | |
| bpnet/ | 2026-03-16 20:57 | - | |
| bpnet_contributions.sh | 2025-11-17 22:10 | 711 | |
| bpnet_finemo.sh | 2026-02-11 06:34 | 1.1K | |
| bpnet_modisco.sh | 2026-01-05 20:24 | 1.0K | |
| bpnet_pipeline.sh | 2025-12-30 04:33 | 504 | |
| bpnet_predict.sh | 2025-11-17 22:09 | 938 | |
| bpnet_preprocessing_pipeline.sh | 2025-12-30 02:51 | 2.5K | |
| bpnet_training.sh | 2025-11-17 22:36 | 1.0K | |
| chip_data_exploration.ipynb | 2025-12-01 21:19 | 267K | |
| chip_data_exploration.sh | 2025-11-12 03:15 | 6.8K | |
| chip_data_exploration_v2.ipynb | 2026-02-04 23:56 | 623K | |
| contributions/ | 2026-01-05 08:15 | - | |
| data/ | 2025-12-30 03:40 | - | |
| data_exploration/ | 2025-11-10 20:56 | - | |
| evaluate_bpnet.ipynb | 2025-11-18 21:11 | 513K | |
| evaluate_bpnet_V2.ipynb | 2026-01-05 23:34 | 384K | |
| finemo/ | 2026-02-11 06:32 | - | |
| fusion_deconvolution_V1/ | 2026-02-11 21:08 | - | |
| fusion_deconvolution_V2/ | 2026-03-17 21:30 | - | |
| generate_bpnet_models_counts_loss_weights.sh | 2025-12-30 04:25 | 230 | |
| models/ | 2026-01-05 08:02 | - | |
| modisco/ | 2026-01-05 20:04 | - | |
| outliers.log | 2026-01-05 07:40 | 52K | |
| predictions/ | 2026-01-05 08:12 | - | |
| run_bpnet_pipeline.sh | 2025-11-17 22:51 | 380 | |
| run_bpnet_preprocessing_pipeline.sh | 2026-01-05 07:24 | 4.8K | |
| run_finemo.sh | 2025-12-04 04:17 | 157 | |
| run_modisco.sh | 2025-11-19 15:21 | 259 | |
| sherlock_logs/ | 2026-01-05 20:04 | - | |
| utils/ | 2025-11-19 01:34 | - | |
| viz/ | 2026-01-07 00:39 | - | |