Index of /kundaje/shouvikm/BPNet

[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory  -  
[DIR]MotifCompendium/2026-02-11 06:34 -  
[ ]affinity_distillation.ipynb2025-12-10 02:05 826K 
[DIR]affinity_distillation/2026-01-05 23:11 -  
[ ]affinity_distillation_V2.ipynb2026-01-15 22:19 3.5M 
[ ]affinity_distillation_V3.ipynb2026-01-06 23:35 636K 
[ ]analyze_finemo_results.ipynb2026-02-11 07:29 648K 
[DIR]atac_overlap/2025-11-24 21:21 -  
[TXT]average_bpnet_outputs_across_folds.sh2025-11-19 01:53 2.4K 
[TXT]bpnet_contributions.sh2025-11-17 22:10 711  
[TXT]bpnet_finemo.sh2026-02-11 06:34 1.1K 
[TXT]bpnet_modisco.sh2026-01-05 20:24 1.0K 
[TXT]bpnet_pipeline.sh2025-12-30 04:33 504  
[TXT]bpnet_predict.sh2025-11-17 22:09 938  
[TXT]bpnet_preprocessing_pipeline.sh2025-12-30 02:51 2.5K 
[TXT]bpnet_training.sh2025-11-17 22:36 1.0K 
[ ]chip_data_exploration.ipynb2025-12-01 21:19 267K 
[TXT]chip_data_exploration.sh2025-11-12 03:15 6.8K 
[ ]chip_data_exploration_v2.ipynb2026-02-04 23:56 623K 
[DIR]contributions/2026-01-05 08:15 -  
[DIR]data/2025-12-30 03:40 -  
[DIR]data_exploration/2025-11-10 20:56 -  
[ ]evaluate_bpnet.ipynb2025-11-18 21:11 513K 
[ ]evaluate_bpnet_V2.ipynb2026-01-05 23:34 384K 
[DIR]finemo/2026-02-11 06:32 -  
[DIR]fusion_deconvolution_V1/2026-02-11 21:08 -  
[DIR]fusion_deconvolution_V2/2026-02-23 21:50 -  
[TXT]generate_bpnet_models_counts_loss_weights.sh2025-12-30 04:25 230  
[DIR]models/2026-01-05 08:02 -  
[DIR]modisco/2026-01-05 20:04 -  
[ ]outliers.log2026-01-05 07:40 52K 
[DIR]predictions/2026-01-05 08:12 -  
[TXT]run_bpnet_pipeline.sh2025-11-17 22:51 380  
[TXT]run_bpnet_preprocessing_pipeline.sh2026-01-05 07:24 4.8K 
[TXT]run_finemo.sh2025-12-04 04:17 157  
[TXT]run_modisco.sh2025-11-19 15:21 259  
[DIR]sherlock_logs/2026-01-05 20:04 -  
[DIR]utils/2025-11-19 01:34 -  
[DIR]viz/2026-01-07 00:39 -  
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