| Rank | Motif | Name | P-value | log P-pvalue | q-value (Benjamini) | # Target Sequences with Motif | % of Targets Sequences with Motif | # Background Sequences with Motif | % of Background Sequences with Motif | Motif File |
PDF |
| 1 |  | OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer | 1e-688 | -1.585e+03 | 0.0000 | 1003.0 | 22.65% | 945.4 | 2.10% | motif file (matrix) |
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| 2 |  | Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer | 1e-494 | -1.139e+03 | 0.0000 | 1653.0 | 37.32% | 4640.0 | 10.29% | motif file (matrix) |
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| 3 |  | Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer | 1e-414 | -9.539e+02 | 0.0000 | 2217.0 | 50.06% | 9253.3 | 20.51% | motif file (matrix) |
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| 4 |  | Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer | 1e-366 | -8.441e+02 | 0.0000 | 2053.0 | 46.35% | 8639.3 | 19.15% | motif file (matrix) |
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| 5 |  | Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer | 1e-352 | -8.107e+02 | 0.0000 | 1566.0 | 35.36% | 5424.3 | 12.03% | motif file (matrix) |
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| 6 |  | Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer | 1e-274 | -6.311e+02 | 0.0000 | 1844.0 | 41.63% | 8382.9 | 18.59% | motif file (matrix) |
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| 7 |  | Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer | 1e-167 | -3.865e+02 | 0.0000 | 748.0 | 16.89% | 2407.7 | 5.34% | motif file (matrix) |
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| 8 |  | Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer | 1e-135 | -3.117e+02 | 0.0000 | 965.0 | 21.79% | 4198.5 | 9.31% | motif file (matrix) |
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| 9 |  | Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer | 1e-132 | -3.052e+02 | 0.0000 | 548.0 | 12.37% | 1643.6 | 3.64% | motif file (matrix) |
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| 10 |  | Oct6(POU,Homeobox)/NPC-Oct6-ChIP-Seq(GSE35496)/Homer | 1e-130 | -3.002e+02 | 0.0000 | 658.0 | 14.86% | 2290.7 | 5.08% | motif file (matrix) |
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| 11 |  | Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer | 1e-107 | -2.482e+02 | 0.0000 | 909.0 | 20.52% | 4273.4 | 9.47% | motif file (matrix) |
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| 12 |  | Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer | 1e-74 | -1.718e+02 | 0.0000 | 398.0 | 8.99% | 1412.6 | 3.13% | motif file (matrix) |
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| 13 |  | Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer | 1e-72 | -1.669e+02 | 0.0000 | 492.0 | 11.11% | 2022.5 | 4.48% | motif file (matrix) |
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| 14 |  | Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer | 1e-61 | -1.417e+02 | 0.0000 | 612.0 | 13.82% | 3039.1 | 6.74% | motif file (matrix) |
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| 15 |  | KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer | 1e-46 | -1.074e+02 | 0.0000 | 742.0 | 16.75% | 4396.0 | 9.75% | motif file (matrix) |
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| 16 |  | NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer | 1e-27 | -6.227e+01 | 0.0000 | 106.0 | 2.39% | 302.7 | 0.67% | motif file (matrix) |
pdf |
| 17 |  | NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer | 1e-26 | -6.094e+01 | 0.0000 | 364.0 | 8.22% | 2029.1 | 4.50% | motif file (matrix) |
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| 18 |  | Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer | 1e-26 | -6.072e+01 | 0.0000 | 509.0 | 11.49% | 3167.4 | 7.02% | motif file (matrix) |
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| 19 |  | EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer | 1e-24 | -5.723e+01 | 0.0000 | 172.0 | 3.88% | 710.6 | 1.58% | motif file (matrix) |
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| 20 |  | Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer | 1e-24 | -5.629e+01 | 0.0000 | 570.0 | 12.87% | 3736.8 | 8.28% | motif file (matrix) |
pdf |
| 21 |  | Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer | 1e-24 | -5.593e+01 | 0.0000 | 402.0 | 9.08% | 2384.1 | 5.29% | motif file (matrix) |
pdf |
| 22 |  | Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer | 1e-21 | -5.034e+01 | 0.0000 | 235.0 | 5.31% | 1193.9 | 2.65% | motif file (matrix) |
pdf |
| 23 |  | Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer | 1e-16 | -3.864e+01 | 0.0000 | 2397.0 | 54.12% | 21549.7 | 47.78% | motif file (matrix) |
pdf |
| 24 |  | RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer | 1e-15 | -3.482e+01 | 0.0000 | 177.0 | 4.00% | 933.4 | 2.07% | motif file (matrix) |
pdf |
| 25 |  | Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer | 1e-14 | -3.251e+01 | 0.0000 | 399.0 | 9.01% | 2734.0 | 6.06% | motif file (matrix) |
pdf |
| 26 |  | Zelda(Zf)/Embryo-zld-ChIP-Seq(GSE65441)/Homer | 1e-12 | -2.786e+01 | 0.0000 | 335.0 | 7.56% | 2285.5 | 5.07% | motif file (matrix) |
pdf |
| 27 |  | FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer | 1e-11 | -2.756e+01 | 0.0000 | 300.0 | 6.77% | 1999.5 | 4.43% | motif file (matrix) |
pdf |
| 28 |  | TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer | 1e-10 | -2.476e+01 | 0.0000 | 515.0 | 11.63% | 3918.4 | 8.69% | motif file (matrix) |
pdf |
| 29 |  | Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer | 1e-10 | -2.375e+01 | 0.0000 | 118.0 | 2.66% | 623.0 | 1.38% | motif file (matrix) |
pdf |
| 30 |  | Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer | 1e-9 | -2.272e+01 | 0.0000 | 787.0 | 17.77% | 6465.2 | 14.33% | motif file (matrix) |
pdf |
| 31 |  | Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer | 1e-8 | -2.028e+01 | 0.0000 | 365.0 | 8.24% | 2709.4 | 6.01% | motif file (matrix) |
pdf |
| 32 |  | PCF/Arabidopsis-Promoters/Homer | 1e-8 | -1.904e+01 | 0.0000 | 171.0 | 3.86% | 1092.9 | 2.42% | motif file (matrix) |
pdf |
| 33 |  | Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer | 1e-8 | -1.888e+01 | 0.0000 | 1214.0 | 27.41% | 10691.7 | 23.70% | motif file (matrix) |
pdf |
| 34 |  | ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer | 1e-7 | -1.838e+01 | 0.0000 | 836.0 | 18.88% | 7092.7 | 15.72% | motif file (matrix) |
pdf |
| 35 |  | Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer | 1e-7 | -1.803e+01 | 0.0000 | 204.0 | 4.61% | 1380.8 | 3.06% | motif file (matrix) |
pdf |
| 36 |  | TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer | 1e-7 | -1.799e+01 | 0.0000 | 340.0 | 7.68% | 2548.8 | 5.65% | motif file (matrix) |
pdf |
| 37 |  | NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer | 1e-7 | -1.619e+01 | 0.0000 | 49.0 | 1.11% | 212.0 | 0.47% | motif file (matrix) |
pdf |
| 38 |  | ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer | 1e-6 | -1.607e+01 | 0.0000 | 532.0 | 12.01% | 4341.4 | 9.62% | motif file (matrix) |
pdf |
| 39 |  | EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer | 1e-6 | -1.510e+01 | 0.0000 | 454.0 | 10.25% | 3659.9 | 8.11% | motif file (matrix) |
pdf |
| 40 |  | PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer | 1e-6 | -1.489e+01 | 0.0000 | 162.0 | 3.66% | 1091.5 | 2.42% | motif file (matrix) |
pdf |
| 41 |  | Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer | 1e-6 | -1.487e+01 | 0.0000 | 694.0 | 15.67% | 5900.9 | 13.08% | motif file (matrix) |
pdf |
| 42 |  | CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer | 1e-6 | -1.421e+01 | 0.0000 | 415.0 | 9.37% | 3333.0 | 7.39% | motif file (matrix) |
pdf |
| 43 |  | Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer | 1e-6 | -1.393e+01 | 0.0000 | 1561.0 | 35.24% | 14371.2 | 31.86% | motif file (matrix) |
pdf |
| 44 |  | Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967) | 1e-5 | -1.331e+01 | 0.0000 | 480.0 | 10.84% | 3963.4 | 8.79% | motif file (matrix) |
pdf |
| 45 |  | Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer | 1e-5 | -1.267e+01 | 0.0000 | 1042.0 | 23.53% | 9347.8 | 20.72% | motif file (matrix) |
pdf |
| 46 |  | Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer | 1e-5 | -1.167e+01 | 0.0001 | 247.0 | 5.58% | 1899.8 | 4.21% | motif file (matrix) |
pdf |
| 47 |  | Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer | 1e-4 | -1.139e+01 | 0.0001 | 36.0 | 0.81% | 163.9 | 0.36% | motif file (matrix) |
pdf |
| 48 |  | ABF1/SacCer-Promoters/Homer | 1e-4 | -1.124e+01 | 0.0001 | 67.0 | 1.51% | 388.6 | 0.86% | motif file (matrix) |
pdf |
| 49 |  | DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer | 1e-4 | -1.105e+01 | 0.0001 | 162.0 | 3.66% | 1171.6 | 2.60% | motif file (matrix) |
pdf |
| 50 |  | Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer | 1e-4 | -1.034e+01 | 0.0003 | 83.0 | 1.87% | 526.4 | 1.17% | motif file (matrix) |
pdf |
| 51 |  | ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer | 1e-4 | -1.008e+01 | 0.0003 | 679.0 | 15.33% | 5988.0 | 13.28% | motif file (matrix) |
pdf |
| 52 |  | RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer | 1e-4 | -9.958e+00 | 0.0004 | 79.0 | 1.78% | 500.0 | 1.11% | motif file (matrix) |
pdf |
| 53 |  | Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer | 1e-4 | -9.738e+00 | 0.0004 | 173.0 | 3.91% | 1299.5 | 2.88% | motif file (matrix) |
pdf |
| 54 |  | SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer | 1e-4 | -9.326e+00 | 0.0006 | 534.0 | 12.06% | 4644.4 | 10.30% | motif file (matrix) |
pdf |
| 55 |  | DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer | 1e-3 | -9.146e+00 | 0.0008 | 131.0 | 2.96% | 949.6 | 2.11% | motif file (matrix) |
pdf |
| 56 |  | Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer | 1e-3 | -8.891e+00 | 0.0010 | 109.0 | 2.46% | 767.1 | 1.70% | motif file (matrix) |
pdf |
| 57 |  | ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer | 1e-3 | -8.832e+00 | 0.0010 | 733.0 | 16.55% | 6579.6 | 14.59% | motif file (matrix) |
pdf |
| 58 |  | Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer | 1e-3 | -8.713e+00 | 0.0011 | 470.0 | 10.61% | 4068.9 | 9.02% | motif file (matrix) |
pdf |
| 59 |  | Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer | 1e-3 | -8.551e+00 | 0.0013 | 34.0 | 0.77% | 174.9 | 0.39% | motif file (matrix) |
pdf |
| 60 |  | OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer | 1e-3 | -8.296e+00 | 0.0016 | 11.0 | 0.25% | 30.2 | 0.07% | motif file (matrix) |
pdf |
| 61 |  | Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer | 1e-3 | -7.633e+00 | 0.0031 | 1102.0 | 24.88% | 10271.8 | 22.77% | motif file (matrix) |
pdf |
| 62 |  | E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer | 1e-3 | -7.610e+00 | 0.0031 | 682.0 | 15.40% | 6162.6 | 13.66% | motif file (matrix) |
pdf |
| 63 |  | Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer | 1e-3 | -7.572e+00 | 0.0032 | 204.0 | 4.61% | 1641.8 | 3.64% | motif file (matrix) |
pdf |
| 64 |  | FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer | 1e-3 | -7.260e+00 | 0.0043 | 175.0 | 3.95% | 1389.6 | 3.08% | motif file (matrix) |
pdf |
| 65 |  | ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer | 1e-3 | -7.022e+00 | 0.0053 | 399.0 | 9.01% | 3481.0 | 7.72% | motif file (matrix) |
pdf |
| 66 |  | Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer | 1e-3 | -6.959e+00 | 0.0056 | 190.0 | 4.29% | 1535.6 | 3.40% | motif file (matrix) |
pdf |
| 67 |  | Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer | 1e-2 | -6.669e+00 | 0.0073 | 478.0 | 10.79% | 4254.6 | 9.43% | motif file (matrix) |
pdf |
| 68 |  | ETS(ETS)/Promoter/Homer | 1e-2 | -6.633e+00 | 0.0075 | 133.0 | 3.00% | 1032.3 | 2.29% | motif file (matrix) |
pdf |
| 69 |  | GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer | 1e-2 | -6.602e+00 | 0.0076 | 412.0 | 9.30% | 3627.9 | 8.04% | motif file (matrix) |
pdf |
| 70 |  | Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer | 1e-2 | -6.197e+00 | 0.0113 | 107.0 | 2.42% | 814.3 | 1.81% | motif file (matrix) |
pdf |
| 71 |  | CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer | 1e-2 | -6.159e+00 | 0.0115 | 341.0 | 7.70% | 2976.4 | 6.60% | motif file (matrix) |
pdf |
| 72 |  | ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer | 1e-2 | -6.074e+00 | 0.0124 | 188.0 | 4.24% | 1549.6 | 3.44% | motif file (matrix) |
pdf |
| 73 |  | EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer | 1e-2 | -6.003e+00 | 0.0131 | 387.0 | 8.74% | 3422.5 | 7.59% | motif file (matrix) |
pdf |
| 74 |  | NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer | 1e-2 | -5.995e+00 | 0.0131 | 91.0 | 2.05% | 679.4 | 1.51% | motif file (matrix) |
pdf |
| 75 |  | PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer | 1e-2 | -5.806e+00 | 0.0155 | 269.0 | 6.07% | 2314.8 | 5.13% | motif file (matrix) |
pdf |
| 76 |  | AARE(HLH)/mES-cMyc-ChIP-Seq/Homer | 1e-2 | -5.700e+00 | 0.0170 | 45.0 | 1.02% | 295.3 | 0.65% | motif file (matrix) |
pdf |
| 77 |  | Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer | 1e-2 | -5.608e+00 | 0.0184 | 245.0 | 5.53% | 2098.8 | 4.65% | motif file (matrix) |
pdf |
| 78 |  | Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer | 1e-2 | -5.525e+00 | 0.0198 | 98.0 | 2.21% | 753.6 | 1.67% | motif file (matrix) |
pdf |
| 79 |  | GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer | 1e-2 | -5.505e+00 | 0.0199 | 119.0 | 2.69% | 941.3 | 2.09% | motif file (matrix) |
pdf |
| 80 |  | Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer | 1e-2 | -5.364e+00 | 0.0227 | 228.0 | 5.15% | 1950.2 | 4.32% | motif file (matrix) |
pdf |
| 81 |  | TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer | 1e-2 | -5.360e+00 | 0.0227 | 59.0 | 1.33% | 418.6 | 0.93% | motif file (matrix) |
pdf |
| 82 |  | Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer | 1e-2 | -4.959e+00 | 0.0331 | 290.0 | 6.55% | 2556.8 | 5.67% | motif file (matrix) |
pdf |
| 83 |  | Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer | 1e-2 | -4.892e+00 | 0.0350 | 363.0 | 8.20% | 3258.6 | 7.22% | motif file (matrix) |
pdf |
| 84 |  | EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer | 1e-2 | -4.791e+00 | 0.0383 | 266.0 | 6.01% | 2337.8 | 5.18% | motif file (matrix) |
pdf |
| 85 |  | RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer | 1e-2 | -4.735e+00 | 0.0400 | 77.0 | 1.74% | 589.2 | 1.31% | motif file (matrix) |
pdf |
| 86 |  | Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer | 1e-2 | -4.703e+00 | 0.0408 | 55.0 | 1.24% | 398.6 | 0.88% | motif file (matrix) |
pdf |
| 87 |  | Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer | 1e-2 | -4.681e+00 | 0.0412 | 2266.0 | 51.16% | 22274.1 | 49.38% | motif file (matrix) |
pdf |