Information for 5-TTAATCATTTAC (Motif 9)


Reverse Opposite:

p-value:1e-4
log p-value:-9.911e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif25.00%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets11.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer

Match Rank:1
Score:0.77
Offset:0
Orientation:reverse strand
Alignment:TTAATCATTTAC-
TTAATGTTTAACC

Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer

Match Rank:2
Score:0.77
Offset:1
Orientation:forward strand
Alignment:TTAATCATTTAC
-TAATCAATTA-

MA0046.1_HNF1A/Jaspar

Match Rank:3
Score:0.73
Offset:-2
Orientation:forward strand
Alignment:--TTAATCATTTAC
GGTTAATAATTAAC

MA0153.1_HNF1B/Jaspar

Match Rank:4
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-TTAATCATTTAC
GTTAAATATTAA-

PH0080.1_Hoxd8/Jaspar

Match Rank:5
Score:0.69
Offset:-6
Orientation:reverse strand
Alignment:------TTAATCATTTAC
NAGCCATTAATTANTTA-

PH0146.1_Pou3f1/Jaspar

Match Rank:6
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---TTAATCATTTAC--
NANTTAATTAATTANNN

MF0010.1_Homeobox_class/Jaspar

Match Rank:7
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:TTAATCATTTAC
--AATTATT---

PH0019.1_Dbx2/Jaspar

Match Rank:8
Score:0.64
Offset:-5
Orientation:forward strand
Alignment:-----TTAATCATTTAC
TTTAATTAATTAATTC-

PH0149.1_Pou3f4/Jaspar

Match Rank:9
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---TTAATCATTTAC--
GANTTAATTAATTAANN

PH0136.1_Phox2b/Jaspar

Match Rank:10
Score:0.64
Offset:-4
Orientation:reverse strand
Alignment:----TTAATCATTTAC-
CNNNTTAATTAATTNNN