Information for 1-GCGGCTGCGTTA (Motif 6)


Reverse Opposite:

p-value:1e-4
log p-value:-9.911e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif25.00%
Number of Background Sequences with motif1.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets91.4 +/- 64.8bp
Average Position of motif in Background62.0 +/- 40.2bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)5.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0048.1_NHLH1/Jaspar

Match Rank:1
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--GCGGCTGCGTTA
GCGCAGCTGCGT--

E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer

Match Rank:2
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:GCGGCTGCGTTA
GCAGCTGTNN--

Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--GCGGCTGCGTTA
CAGCAGCTGN----

MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer

Match Rank:4
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---GCGGCTGCGTTA
NNAGCAGCTGCT---

MA0522.1_Tcf3/Jaspar

Match Rank:5
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--GCGGCTGCGTTA
NTGCAGCTGTG---

MA0506.1_NRF1/Jaspar

Match Rank:6
Score:0.57
Offset:0
Orientation:forward strand
Alignment:GCGGCTGCGTTA
GCGCCTGCGCA-

Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer

Match Rank:7
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-GCGGCTGCGTTA
NVCAGCTGBBNN-

NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer

Match Rank:8
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--GCGGCTGCGTTA
CTGCGCATGCGC--

MA0500.1_Myog/Jaspar

Match Rank:9
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-GCGGCTGCGTTA
GACAGCTGCAG--

SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:10
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-GCGGCTGCGTTA
ANCAGCTG-----