Information for 5-GGATTTTACG (Motif 5)


Reverse Opposite:

p-value:1e-4
log p-value:-9.911e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif25.00%
Number of Background Sequences with motif1.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets147.0 +/- 0.0bp
Average Position of motif in Background160.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0077.1_Hoxd12/Jaspar

Match Rank:1
Score:0.75
Offset:-1
Orientation:reverse strand
Alignment:-GGATTTTACG------
NNNATTTTACGACNNTN

PH0076.1_Hoxd11/Jaspar

Match Rank:2
Score:0.74
Offset:-1
Orientation:reverse strand
Alignment:-GGATTTTACG------
ANNATTTTACGACNTNA

PH0048.1_Hoxa13/Jaspar

Match Rank:3
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:GGATTTTACG------
ANATTTTACGAGNNNN

PH0067.1_Hoxc12/Jaspar

Match Rank:4
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-GGATTTTACG------
GNNNTTTTACGACCTNA

PH0068.1_Hoxc13/Jaspar

Match Rank:5
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:GGATTTTACG------
NAATTTTACGAGNTNN

PH0065.1_Hoxc10/Jaspar

Match Rank:6
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:GGATTTTACG------
ANNTTTTACGACNTNN

PH0047.1_Hoxa11/Jaspar

Match Rank:7
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:GGATTTTACG------
NNGTTTTACGACTTTA

PH0066.1_Hoxc11/Jaspar

Match Rank:8
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:GGATTTTACG------
NNNTTTTACGACNTTN

PB0075.1_Sp100_1/Jaspar

Match Rank:9
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:GGATTTTACG------
--ATTTTCCGNNAAAT

MA0107.1_RELA/Jaspar

Match Rank:10
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-GGATTTTACG
GGGAATTTCC-