Information for 4-TGCACGTCAT (Motif 4)


Reverse Opposite:

p-value:1e-4
log p-value:-9.911e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif25.00%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets72.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MF0002.1_bZIP_CREB/G-box-like_subclass/Jaspar

Match Rank:1
Score:0.77
Offset:3
Orientation:reverse strand
Alignment:TGCACGTCAT
---ACGTCA-

PB0108.1_Atf1_2/Jaspar

Match Rank:2
Score:0.75
Offset:-2
Orientation:reverse strand
Alignment:--TGCACGTCAT--
NTTATTCGTCATNC

HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:3
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:TGCACGTCAT
BGCACGTA--

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:4
Score:0.72
Offset:1
Orientation:reverse strand
Alignment:TGCACGTCAT
-GCACGTAY-

MA0089.1_NFE2L1::MafG/Jaspar

Match Rank:5
Score:0.70
Offset:5
Orientation:reverse strand
Alignment:TGCACGTCAT-
-----GTCATN

MA0259.1_HIF1A::ARNT/Jaspar

Match Rank:6
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:TGCACGTCAT
-GCACGTNC-

MA0464.1_Bhlhe40/Jaspar

Match Rank:7
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-TGCACGTCAT
NTGCACGTGAG

HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:8
Score:0.66
Offset:1
Orientation:forward strand
Alignment:TGCACGTCAT-
-GCACGTACCC

bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.64
Offset:1
Orientation:forward strand
Alignment:TGCACGTCAT-
-KCACGTGMCN

MA0004.1_Arnt/Jaspar

Match Rank:10
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:TGCACGTCAT
--CACGTG--