Information for 20-TGTTGTGTGG (Motif 34)


Reverse Opposite:

p-value:1e-2
log p-value:-6.733e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif25.00%
Number of Background Sequences with motif24.2
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets112.0 +/- 44.9bp
Average Position of motif in Background101.3 +/- 75.8bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)3.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0208.1_Zscan4_2/Jaspar

Match Rank:1
Score:0.70
Offset:-2
Orientation:reverse strand
Alignment:--TGTTGTGTGG----
NNNNTTGTGTGCTTNN

PB0120.1_Foxj1_2/Jaspar

Match Rank:2
Score:0.68
Offset:-4
Orientation:reverse strand
Alignment:----TGTTGTGTGG-
GTNTTGTTGTGANNT

PB0121.1_Foxj3_2/Jaspar

Match Rank:3
Score:0.67
Offset:-5
Orientation:reverse strand
Alignment:-----TGTTGTGTGG--
NNCTTTGTTTTGNTNNN

MA0511.1_RUNX2/Jaspar

Match Rank:4
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-TGTTGTGTGG----
GGGGTTTGTGGTTTG

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:5
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:TGTTGTGTGG----
--NNHTGTGGTTWN

MA0133.1_BRCA1/Jaspar

Match Rank:6
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-TGTTGTGTGG
GTGTTGN----

MA0503.1_Nkx2-5_(var.2)/Jaspar

Match Rank:7
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:TGTTGTGTGG--
-CTTGAGTGGCT

PB0060.1_Smad3_1/Jaspar

Match Rank:8
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--TGTTGTGTGG-----
NNTNNTGTCTGGNNTNG

PB0167.1_Sox13_2/Jaspar

Match Rank:9
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-TGTTGTGTGG------
GTATTGGGTGGGTAATT

MA0002.2_RUNX1/Jaspar

Match Rank:10
Score:0.63
Offset:2
Orientation:forward strand
Alignment:TGTTGTGTGG---
--GTCTGTGGTTT