Information for 3-CTCACTATAC (Motif 3)


Reverse Opposite:

p-value:1e-4
log p-value:-9.911e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif25.00%
Number of Background Sequences with motif1.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets166.0 +/- 0.0bp
Average Position of motif in Background185.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0152.1_Pou6f1_2/Jaspar

Match Rank:1
Score:0.65
Offset:-5
Orientation:reverse strand
Alignment:-----CTCACTATAC--
GCAACCTCATTATNNNN

PH0151.1_Pou6f1_1/Jaspar

Match Rank:2
Score:0.62
Offset:-5
Orientation:reverse strand
Alignment:-----CTCACTATAC--
NNNACCTCATTATCNTN

Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer

Match Rank:3
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--CTCACTATAC
GKVTCADRTTWC

PB0106.1_Arid5a_2/Jaspar

Match Rank:4
Score:0.53
Offset:0
Orientation:forward strand
Alignment:CTCACTATAC-------
CATACAATACGAAATAA

MA0033.1_FOXL1/Jaspar

Match Rank:5
Score:0.53
Offset:1
Orientation:forward strand
Alignment:CTCACTATAC
-TATACATA-

MA0032.1_FOXC1/Jaspar

Match Rank:6
Score:0.53
Offset:7
Orientation:reverse strand
Alignment:CTCACTATAC-----
-------TACTNNNN

MA0595.1_SREBF1/Jaspar

Match Rank:7
Score:0.51
Offset:0
Orientation:forward strand
Alignment:CTCACTATAC
ATCACCCCAC

POL002.1_INR/Jaspar

Match Rank:8
Score:0.51
Offset:1
Orientation:forward strand
Alignment:CTCACTATAC
-TCAGTCTT-

MA0122.1_Nkx3-2/Jaspar

Match Rank:9
Score:0.50
Offset:0
Orientation:reverse strand
Alignment:CTCACTATAC
NCCACTTAN-

PB0128.1_Gcm1_2/Jaspar

Match Rank:10
Score:0.50
Offset:-4
Orientation:reverse strand
Alignment:----CTCACTATAC---
NTCNTCCCCTATNNGNN