Information for 11-ATATGTGGAC (Motif 29)


Reverse Opposite:

p-value:1e-3
log p-value:-8.119e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif25.00%
Number of Background Sequences with motif6.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets80.0 +/- 0.0bp
Average Position of motif in Background134.2 +/- 51.7bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0104.1_Zscan4_1/Jaspar

Match Rank:1
Score:0.73
Offset:-2
Orientation:reverse strand
Alignment:--ATATGTGGAC-----
NTNTATGTGCACATNNN

PB0026.1_Gm397_1/Jaspar

Match Rank:2
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--ATATGTGGAC-----
NNGTATGTGCACATNNN

MA0130.1_ZNF354C/Jaspar

Match Rank:3
Score:0.67
Offset:4
Orientation:reverse strand
Alignment:ATATGTGGAC
----GTGGAT

MA0033.1_FOXL1/Jaspar

Match Rank:4
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:ATATGTGGAC
-TATGTNTA-

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:5
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:ATATGTGGAC--
NNHTGTGGTTWN

MF0008.1_MADS_class/Jaspar

Match Rank:6
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--ATATGTGGAC
CCATATATGG--

Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.60
Offset:1
Orientation:forward strand
Alignment:ATATGTGGAC---
-NNTGTGGATTSS

MA0479.1_FOXH1/Jaspar

Match Rank:8
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:ATATGTGGAC----
---TGTGGATTNNN

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:9
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----ATATGTGGAC---
NTNNTTAAGTGGNTNAN

CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan et al.)/Homer

Match Rank:10
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--ATATGTGGAC
CCATATATGGNA